##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139690_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11166378 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.94012391484508 33.0 31.0 33.0 25.0 34.0 2 31.893442708101052 33.0 32.0 33.0 28.0 34.0 3 31.657069373793366 33.0 31.0 33.0 28.0 34.0 4 32.24716510582035 33.0 33.0 34.0 30.0 34.0 5 32.273835526613915 33.0 33.0 34.0 31.0 34.0 6 35.60406409311954 38.0 36.0 38.0 29.0 38.0 7 36.28736336885604 38.0 37.0 38.0 33.0 38.0 8 36.43964318599997 38.0 37.0 38.0 34.0 38.0 9 36.63682771620305 38.0 38.0 38.0 34.0 38.0 10-11 36.70155004604 38.0 38.0 38.0 34.0 38.0 12-13 36.74137983686384 38.0 38.0 38.0 34.0 38.0 14-15 36.78653472056919 38.0 38.0 38.0 35.0 38.0 16-17 36.77141222516379 38.0 38.0 38.0 35.0 38.0 18-19 36.7726310626418 38.0 38.0 38.0 35.0 38.0 20-21 36.80113712667821 38.0 38.0 38.0 35.0 38.0 22-23 36.7753990180003 38.0 38.0 38.0 35.0 38.0 24-25 36.78148280530411 38.0 38.0 38.0 35.0 38.0 26-27 36.74507194537348 38.0 38.0 38.0 34.5 38.0 28-29 36.66591904092421 38.0 38.0 38.0 34.0 38.0 30-31 36.693973803744925 38.0 38.0 38.0 34.0 38.0 32-33 36.686547442074314 38.0 38.0 38.0 34.0 38.0 34-35 36.66774530081903 38.0 38.0 38.0 34.0 38.0 36-37 36.64004248895293 38.0 38.0 38.0 34.0 38.0 38-39 36.60475894121504 38.0 38.0 38.0 34.0 38.0 40-41 36.628789833465376 38.0 38.0 38.0 34.0 38.0 42-43 36.604107047461454 38.0 38.0 38.0 34.0 38.0 44-45 36.53981392136143 38.0 38.0 38.0 34.0 38.0 46-47 36.424471947360715 38.0 38.0 38.0 34.0 38.0 48-49 36.380295776659906 38.0 38.0 38.0 34.0 38.0 50-51 36.38688506585619 38.0 38.0 38.0 34.0 38.0 52-53 36.39243992596504 38.0 38.0 38.0 34.0 38.0 54-55 36.31132181157593 38.0 38.0 38.0 33.0 38.0 56-57 36.32941757350521 38.0 38.0 38.0 33.0 38.0 58-59 36.267135990347356 38.0 38.0 38.0 33.0 38.0 60-61 36.278448287266045 38.0 38.0 38.0 33.0 38.0 62-63 36.29310887518666 38.0 38.0 38.0 33.0 38.0 64-65 36.28021371664456 38.0 38.0 38.0 33.0 38.0 66-67 36.25952441422588 38.0 37.5 38.0 33.0 38.0 68-69 36.237306172311776 38.0 37.0 38.0 33.0 38.0 70-71 36.233109394165325 38.0 37.0 38.0 33.0 38.0 72-73 36.22043635465886 38.0 37.0 38.0 33.0 38.0 74-75 36.18423839236728 38.0 37.0 38.0 33.0 38.0 76-77 36.17721382263039 38.0 37.0 38.0 33.0 38.0 78-79 36.16741862234572 38.0 37.0 38.0 33.0 38.0 80-81 36.17601586530098 38.0 37.0 38.0 33.0 38.0 82-83 36.14346949527473 38.0 37.0 38.0 33.0 38.0 84-85 36.11352736567151 38.0 37.0 38.0 33.0 38.0 86-87 36.11661344039769 38.0 37.0 38.0 33.0 38.0 88-89 36.1239790041802 38.0 37.0 38.0 33.0 38.0 90-91 36.074594346005554 38.0 37.0 38.0 33.0 38.0 92-93 36.098157436518115 38.0 37.0 38.0 33.0 38.0 94-95 36.050782333409494 38.0 37.0 38.0 33.0 38.0 96-97 36.07888799569064 38.0 37.0 38.0 33.0 38.0 98-99 36.126333171325186 38.0 37.0 38.0 33.0 38.0 100-101 35.5866772227614 38.0 36.0 38.0 30.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 30.0 19 59.0 20 156.0 21 608.0 22 2593.0 23 7716.0 24 17398.0 25 32969.0 26 54114.0 27 81421.0 28 114853.0 29 153626.0 30 197463.0 31 248076.0 32 312800.0 33 402560.0 34 551408.0 35 848697.0 36 1722292.0 37 6417537.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.525538182569136 20.878954661932454 14.193662439154398 25.401844716344012 2 13.895696527557996 20.798301830727922 43.202119792111645 22.10388184960244 3 17.79528688711774 26.503365728797647 30.125928031452993 25.575419352631624 4 12.288962454969731 18.874768523866916 38.8951905443287 29.941078476834655 5 13.437998067634235 37.30088719998552 35.558406570688796 13.702708161691449 6 29.138857738829905 38.44725657684166 18.794115692662384 13.619769991666054 7 25.911309455415203 33.04393079952674 22.90933730658796 18.135422438470094 8 23.741924194219468 37.32237973674185 21.178156426372098 17.757539642666583 9 24.975976990927588 17.416990540710696 21.324166170982213 36.282866297379506 10-11 23.801992911219735 27.209516819151208 28.796750387636887 20.191739881992174 12-13 24.805465120381918 24.518044257502297 28.947139349930655 21.729351272185127 14-15 21.935805862921708 25.89855457158982 26.652003899563493 25.513635665924976 16-17 21.45162468976064 29.201814590192093 27.322928706157 22.02363201389027 18-19 21.453720266320914 28.037932264159426 29.255762253436163 21.252585216083496 20-21 22.21498802783119 27.103706838521273 29.20747972513783 21.473825408509708 22-23 21.84250613987647 27.290365475522645 29.089456868294228 21.77767151630666 24-25 21.66770123745415 27.41274000026872 29.32684375293912 21.592715009338008 26-27 21.563454979076297 27.487921086672625 29.32660982075162 21.622014113499453 28-29 21.26071982481817 27.300185745545136 29.387547856330787 22.051546573305902 30-31 21.589308341047207 27.113367718001047 29.48671179132869 21.810612149623047 32-33 21.366139360805807 27.364469377634183 29.446703239459925 21.822688022100085 34-35 21.523487479066354 27.616649644549994 29.468657140440325 21.391205735943323 36-37 21.59027695087299 27.39788565321296 29.157416391933204 21.854421003980846 38-39 21.4723299691538 27.353779041620164 29.405570916773506 21.768320072452532 40-41 21.736117956208176 27.221264582651084 29.379728372406817 21.66288908873393 42-43 21.87484360289167 27.222433439925307 29.18401608879807 21.71870686838495 44-45 21.679809633754704 27.531707544519623 29.03388963325686 21.754593188468814 46-47 21.966897389554337 27.290185407641825 28.59926908233652 22.143648120467315 48-49 21.848693304960292 27.37630843432533 28.632446032991982 22.142552227722398 50-51 21.648125031383906 27.540224043211314 28.73929171610674 22.07235920929804 52-53 21.81202227351521 27.57153246119041 28.81927085017954 21.79717441511483 54-55 21.81028012689587 27.59029771975172 28.50880541570805 22.09061673764436 56-57 22.007529248509844 27.79735086396396 28.214064570786146 21.98105531674005 58-59 21.6345002821934 28.0730822034477 28.62758831005009 21.66482920430881 60-61 21.926325250813782 28.32901037371783 28.15449895522704 21.590165420241345 62-63 21.589636797098553 28.590710708788702 28.12922108619266 21.69043140792008 64-65 21.563993316435663 28.526512654753734 28.1109618659819 21.798532162828703 66-67 21.68290379196291 28.519274945847293 27.957545032683306 21.84027622950649 68-69 21.726055829425444 28.272360724617773 28.118329476854132 21.88325396910265 70-71 21.758646019635762 27.847804163933752 28.271563005380703 22.121986811049783 72-73 21.909958734988564 27.69092695819419 28.295845511877634 22.103268794939616 74-75 21.805660785368445 27.759364550998058 28.21227472725441 22.22269993637909 76-77 21.898542759290017 27.74939244578572 28.156032373887562 22.196032421036705 78-79 21.886512495587453 27.78100223485993 28.105783983310822 22.22670128624179 80-81 21.86387854381454 27.832517083180086 28.063907350713496 22.23969702229188 82-83 21.92581514341108 27.788297634797605 28.15380073326065 22.132086488530668 84-85 22.127974418020802 27.78037193041757 28.020119263051278 22.071534388510347 86-87 21.893913245532108 27.852400546840105 28.09868726792007 22.15499893970772 88-89 21.987126448317333 27.795130563109545 28.12716509862443 22.090577889948694 90-91 21.995218971100524 27.776169771055347 28.14369896637533 22.084912291468797 92-93 21.9915151411869 27.751909274154247 28.157861654967675 22.09871392969118 94-95 21.884383743628305 27.878479739249943 28.143893553798012 22.09324296332374 96-97 21.88772653193161 27.908409472872926 28.1404218527738 22.063442142421668 98-99 22.14216455510673 28.44739480902038 28.210377263122723 21.200063372750165 100-101 22.785263612225577 30.987872741350646 25.562246573113462 20.66461707331031 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3340.0 1 3111.0 2 3398.0 3 4201.0 4 5364.0 5 7708.0 6 9863.5 7 12289.5 8 15177.0 9 16587.5 10 15982.0 11 14915.5 12 15808.5 13 19660.0 14 28068.0 15 38563.5 16 46675.5 17 51566.0 18 51905.5 19 48156.5 20 43312.5 21 39104.5 22 38094.0 23 42098.5 24 51285.0 25 65745.0 26 85498.5 27 107945.0 28 131808.0 29 157778.0 30 183100.0 31 209278.5 32 238578.0 33 269773.5 34 301535.5 35 330440.0 36 360054.0 37 386259.0 38 403431.0 39 417209.0 40 433555.5 41 447757.5 42 454815.5 43 466031.5 44 497889.5 45 515788.0 46 501744.5 47 488645.0 48 474232.0 49 456897.0 50 441019.5 51 421745.5 52 399911.5 53 376293.0 54 350094.0 55 321750.0 56 292046.5 57 260494.0 58 229778.0 59 200377.0 60 167099.0 61 133411.5 62 103614.5 63 78665.0 64 59149.5 65 43486.5 66 31127.5 67 22894.0 68 17157.5 69 12385.0 70 8820.0 71 6318.5 72 4473.5 73 3049.0 74 2018.0 75 1306.5 76 825.5 77 480.0 78 299.5 79 192.5 80 131.0 81 87.5 82 57.5 83 41.0 84 30.5 85 22.0 86 13.5 87 9.5 88 8.0 89 7.0 90 5.5 91 3.0 92 1.5 93 1.5 94 1.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0626881877006134 6 0.0 7 0.0034478503235337364 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 4.4793932679736106E-5 28-29 1.7924345549656105E-5 30-31 3.588369681200715E-5 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 9.288150998956894E-6 46-47 4.6854895589253495E-6 48-49 0.0 50-51 4.7641600245144614E-6 52-53 8.11010898210886E-4 54-55 1.4979612023216467E-4 56-57 0.0031107606028741674 58-59 0.008050105899854425 60-61 0.003235436159056416 62-63 0.005772902593969208 64-65 0.0069609324085913304 66-67 0.005094312139486537 68-69 0.0038042384151172623 70-71 0.005426507631319013 72-73 0.003324658359790319 74-75 0.003131583623792138 76-77 0.0026520689647228216 78-79 8.117507743290637E-5 80-81 0.0 82-83 0.0 84-85 0.0 86-87 1.0151724287289737E-4 88-89 0.0 90-91 2.5956198971915337E-4 92-93 0.0 94-95 1.653813093486333E-4 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 160.0 20-21 624.0 22-23 1261.0 24-25 1526.0 26-27 3303.0 28-29 7381.0 30-31 21260.0 32-33 27629.0 34-35 37617.0 36-37 58945.0 38-39 68299.0 40-41 69996.0 42-43 79145.0 44-45 93739.0 46-47 94356.0 48-49 86137.0 50-51 78692.0 52-53 70237.0 54-55 75630.0 56-57 77624.0 58-59 83153.0 60-61 87243.0 62-63 85709.0 64-65 98261.0 66-67 107183.0 68-69 104698.0 70-71 120581.0 72-73 84639.0 74-75 86413.0 76-77 92158.0 78-79 95013.0 80-81 95823.0 82-83 91137.0 84-85 91765.0 86-87 95976.0 88-89 99455.0 90-91 101677.0 92-93 100191.0 94-95 108523.0 96-97 167048.0 98-99 919695.0 100-101 7296476.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.79732723415671 #Duplication Level Percentage of deduplicated Percentage of total 1 89.07195826266296 74.63992033923516 2 7.436682871886958 12.463482963043196 3 1.8999271736919534 4.776264572847934 4 0.7148663382664283 2.39615553905581 5 0.3407582433763551 1.427731501397242 6 0.17618173229816686 0.885813496444205 7 0.10415174956718998 0.610934676834423 8 0.06433604531155389 0.4312950913539052 9 0.05062494585573284 0.381801163867588 >10 0.13792774956033263 1.7428083519839477 >50 0.0018840663411036104 0.1047637231370215 >100 6.468312293753645E-4 0.09217419204400103 >500 3.599445866433207E-5 0.022802199665886116 >1k 1.7995493261795748E-5 0.024052189089700228 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.955455385801914E-6 2 0.0 1.791091077160383E-5 0.0 8.955455385801914E-6 8.955455385801914E-6 3 0.0 1.791091077160383E-5 0.0 8.955455385801914E-6 8.955455385801914E-6 4 0.0 6.26881877006134E-5 0.0 8.955455385801914E-6 8.955455385801914E-6 5 8.955455385801914E-6 6.26881877006134E-5 0.0 8.955455385801914E-6 8.955455385801914E-6 6 8.955455385801914E-6 6.26881877006134E-5 0.0 8.955455385801914E-6 8.955455385801914E-6 7 8.955455385801914E-6 6.26881877006134E-5 0.0 8.955455385801914E-6 8.955455385801914E-6 8 8.955455385801914E-6 6.26881877006134E-5 0.0 8.955455385801914E-6 8.955455385801914E-6 9 8.955455385801914E-6 9.851000924382104E-5 0.0 1.791091077160383E-5 1.791091077160383E-5 10-11 3.582182154320766E-5 1.0746546462962296E-4 0.0 1.791091077160383E-5 1.791091077160383E-5 12-13 3.582182154320766E-5 1.0746546462962296E-4 0.0 2.686636615740574E-5 1.791091077160383E-5 14-15 3.582182154320766E-5 1.343318307870287E-4 0.0 3.13440938503067E-5 1.791091077160383E-5 16-17 4.029954923610861E-5 1.3880955847992967E-4 0.0 3.582182154320766E-5 1.791091077160383E-5 18-19 4.4777276929009565E-5 1.5224274155863253E-4 0.0 5.373273231481148E-5 1.791091077160383E-5 20-21 4.4777276929009565E-5 1.6119819694443443E-4 0.0 6.26881877006134E-5 1.791091077160383E-5 22-23 4.4777276929009565E-5 1.8358683540893922E-4 0.0 8.955455385801913E-5 2.6866366157405743E-5 24-25 4.925500462191052E-5 1.970200184876421E-4 0.0 1.6119819694443443E-4 3.582182154320766E-5 26-27 5.373273231481148E-5 2.0597547387344402E-4 0.0 2.820968446527603E-4 3.582182154320766E-5 28-29 5.373273231481148E-5 2.0597547387344402E-4 0.0 6.447927877777377E-4 3.582182154320766E-5 30-31 5.373273231481148E-5 2.3284184003084975E-4 0.0 0.0020104997341125297 4.029954923610861E-5 32-33 5.373273231481148E-5 2.3284184003084975E-4 0.0 0.005534471428425582 6.26881877006134E-5 34-35 6.26881877006134E-5 2.6418593388115644E-4 0.0 0.010007721393633637 7.164364308641531E-5 36-37 8.059909847221722E-5 2.8657457234566126E-4 0.0 0.01723029616228288 7.164364308641531E-5 38-39 8.059909847221722E-5 2.8657457234566126E-4 0.0 0.029315683205422563 7.164364308641531E-5 40-41 8.955455385801913E-5 3.2239639388886886E-4 0.0 0.06088366344037431 8.955455385801913E-5 42-43 8.955455385801913E-5 3.3582957696757175E-4 0.0 0.07263769863423933 8.955455385801913E-5 44-45 8.955455385801913E-5 3.940400369752842E-4 0.0 0.08856945376558092 9.403228155092008E-5 46-47 8.955455385801913E-5 4.3881731390429376E-4 0.0 0.10618035678176038 1.1194319232252392E-4 48-49 8.955455385801913E-5 4.4329504159719473E-4 0.0 0.12258675104854949 1.253763754012268E-4 50-51 8.955455385801913E-5 4.880723185262043E-4 0.0 0.13825432024600992 1.253763754012268E-4 52-53 1.1642092001542487E-4 4.970277739120062E-4 0.0 0.16253255979691894 1.2985410309412774E-4 54-55 1.1642092001542487E-4 5.015055016049072E-4 0.0 0.21364582141138336 1.3880955847992967E-4 56-57 1.1642092001542487E-4 5.10460956990709E-4 0.0 0.26991742532806967 1.4328728617283063E-4 58-59 1.1642092001542487E-4 5.10460956990709E-4 0.0 0.3320100752455273 1.477650138657316E-4 60-61 1.1642092001542487E-4 5.10460956990709E-4 0.0 0.35603756204563375 1.5224274155863253E-4 62-63 1.1642092001542487E-4 5.238941400694119E-4 0.0 0.36864236550115 1.6119819694443443E-4 64-65 1.1642092001542487E-4 5.821046000771243E-4 0.0 0.38021281385960604 1.6119819694443443E-4 66-67 1.1642092001542487E-4 5.821046000771243E-4 0.0 0.3868129844789421 1.6119819694443443E-4 68-69 1.253763754012268E-4 5.865823277700253E-4 0.0 0.3929698600566809 1.6119819694443443E-4 70-71 1.253763754012268E-4 5.910600554629263E-4 0.0 0.3987550842359089 1.6119819694443443E-4 72-73 1.253763754012268E-4 5.910600554629263E-4 0.0 0.4031701237411093 2.0597547387344402E-4 74-75 1.253763754012268E-4 5.910600554629263E-4 0.0 0.4069627590969963 2.0597547387344402E-4 76-77 1.253763754012268E-4 6.17926421620332E-4 0.0 0.4103479212328295 2.0597547387344402E-4 78-79 1.253763754012268E-4 6.358373323919359E-4 0.0 0.41335247651476603 2.0597547387344402E-4 80-81 1.253763754012268E-4 6.358373323919359E-4 0.0 0.41441817570567646 2.2388638464504782E-4 82-83 1.253763754012268E-4 6.358373323919359E-4 0.0 0.4149420698457459 2.3284184003084975E-4 84-85 1.253763754012268E-4 6.358373323919359E-4 0.0 0.41539432034272883 2.3284184003084975E-4 86-87 1.253763754012268E-4 6.447927877777377E-4 0.0 0.4156226844550668 2.3284184003084975E-4 88-89 1.253763754012268E-4 6.537482431635397E-4 0.0 0.41568537264276745 2.3284184003084975E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14940 0.0 51.76005 1 GTATCAA 29220 0.0 39.549686 1 TCAACGC 34870 0.0 32.734413 4 ATCAACG 35005 0.0 32.559025 3 CAACGCA 35845 0.0 31.784029 5 TATCAAC 36355 0.0 31.598417 2 AACGCAG 37300 0.0 30.561947 6 CTTATAC 15180 0.0 29.465727 1 ACGCAGA 42220 0.0 26.969946 7 CGCAGAG 42520 0.0 26.738024 8 TATACAC 19500 0.0 25.011173 3 TTATACA 20370 0.0 22.845036 2 GCAGAGT 50025 0.0 22.700874 9 GTGGTAT 7515 0.0 22.319847 1 TGGTATC 7140 0.0 21.805494 2 GAGTACT 29730 0.0 20.530066 12-13 GTACATG 35835 0.0 19.52701 1 TACATGG 35250 0.0 19.521646 2 CAGAGTA 48570 0.0 19.513597 10-11 ACACATC 23920 0.0 19.03054 6 >>END_MODULE