##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139688_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11378314 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.90250040559612 33.0 31.0 33.0 25.0 34.0 2 31.872788885945667 33.0 32.0 33.0 28.0 34.0 3 31.65136961416252 33.0 31.0 33.0 28.0 34.0 4 32.245570477313244 33.0 33.0 34.0 30.0 34.0 5 32.27378344454196 33.0 33.0 34.0 31.0 34.0 6 35.61269332169951 38.0 36.0 38.0 29.0 38.0 7 36.28677359404917 38.0 37.0 38.0 33.0 38.0 8 36.43844026452425 38.0 37.0 38.0 34.0 38.0 9 36.63412074934828 38.0 38.0 38.0 34.0 38.0 10-11 36.701366081125904 38.0 38.0 38.0 34.0 38.0 12-13 36.74615681198462 38.0 38.0 38.0 34.0 38.0 14-15 36.79021953516136 38.0 38.0 38.0 35.0 38.0 16-17 36.77438968550174 38.0 38.0 38.0 35.0 38.0 18-19 36.77720244844711 38.0 38.0 38.0 35.0 38.0 20-21 36.80386598456942 38.0 38.0 38.0 35.0 38.0 22-23 36.777050427297056 38.0 38.0 38.0 35.0 38.0 24-25 36.78380318369233 38.0 38.0 38.0 35.0 38.0 26-27 36.74832034900027 38.0 38.0 38.0 34.5 38.0 28-29 36.6744772333433 38.0 38.0 38.0 34.0 38.0 30-31 36.69299888484637 38.0 38.0 38.0 34.0 38.0 32-33 36.689525285931026 38.0 38.0 38.0 34.0 38.0 34-35 36.677535983273515 38.0 38.0 38.0 34.0 38.0 36-37 36.65055506931944 38.0 38.0 38.0 34.0 38.0 38-39 36.628919633246696 38.0 38.0 38.0 34.0 38.0 40-41 36.638389546551664 38.0 38.0 38.0 34.0 38.0 42-43 36.61074692487248 38.0 38.0 38.0 34.0 38.0 44-45 36.54904603228465 38.0 38.0 38.0 34.0 38.0 46-47 36.43190385556265 38.0 38.0 38.0 34.0 38.0 48-49 36.38512838573063 38.0 38.0 38.0 34.0 38.0 50-51 36.395686376045354 38.0 38.0 38.0 34.0 38.0 52-53 36.40180533033184 38.0 38.0 38.0 34.0 38.0 54-55 36.32616308770174 38.0 38.0 38.0 33.0 38.0 56-57 36.34627342553227 38.0 38.0 38.0 34.0 38.0 58-59 36.29160810782438 38.0 38.0 38.0 33.0 38.0 60-61 36.30553998128937 38.0 38.0 38.0 33.0 38.0 62-63 36.322966793296814 38.0 38.0 38.0 33.0 38.0 64-65 36.31366394422034 38.0 38.0 38.0 33.0 38.0 66-67 36.29409486121904 38.0 38.0 38.0 33.0 38.0 68-69 36.2753855372524 38.0 37.5 38.0 33.0 38.0 70-71 36.2751557396176 38.0 37.5 38.0 33.0 38.0 72-73 36.26653333415855 38.0 37.5 38.0 33.0 38.0 74-75 36.2295156110241 38.0 37.0 38.0 33.0 38.0 76-77 36.22025538222888 38.0 37.0 38.0 33.0 38.0 78-79 36.20998348258386 38.0 37.0 38.0 33.0 38.0 80-81 36.217302211105455 38.0 37.0 38.0 33.0 38.0 82-83 36.18799510544133 38.0 37.0 38.0 33.0 38.0 84-85 36.15595352090932 38.0 37.0 38.0 33.0 38.0 86-87 36.15829187878951 38.0 37.0 38.0 33.0 38.0 88-89 36.16557643633826 38.0 37.0 38.0 33.0 38.0 90-91 36.1127733018467 38.0 37.0 38.0 33.0 38.0 92-93 36.13079245211255 38.0 37.0 38.0 33.0 38.0 94-95 36.08466359278686 38.0 37.0 38.0 33.0 38.0 96-97 36.114502770803256 38.0 37.0 38.0 33.0 38.0 98-99 36.164423393269864 38.0 37.0 38.0 33.0 38.0 100-101 35.63232044227169 38.0 36.0 38.0 30.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 20.0 19 54.0 20 109.0 21 569.0 22 2441.0 23 7315.0 24 16768.0 25 32116.0 26 53154.0 27 80642.0 28 114487.0 29 154713.0 30 198989.0 31 252624.0 32 318241.0 33 412159.0 34 563518.0 35 866953.0 36 1748564.0 37 6554875.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.041828692721964 20.559372856119104 14.13092484528024 25.267873605878695 2 14.202227148943155 20.673704381861846 42.61773756639165 22.506330902803352 3 17.96712588525857 26.066181685617046 29.874628174262018 26.09206425486236 4 12.526064933697558 18.57827969943526 38.66209879600792 30.233556570859264 5 13.757744789429227 36.95579814366889 35.36298004943122 13.923477017470653 6 29.73513474843461 38.07566744950087 18.567979403626936 13.62121839843759 7 26.410737504256055 32.82856593923983 22.68086223889546 18.079834317608658 8 24.15463310293599 36.96332338868483 20.875078680373914 18.006964828005273 9 25.166136213150736 17.310156847490763 21.206648014811332 36.31705892454717 10-11 24.001029502261932 26.98566325380017 28.643813134353646 20.36949410958425 12-13 25.018912075055066 24.359947927251955 28.842985284505062 21.778154713187917 14-15 22.134074521058217 25.728411959803537 26.585880825577497 25.551632693560748 16-17 21.640130514942722 29.02418143848025 27.210744931103147 22.124943115473876 18-19 21.62358588451681 27.877482551457096 29.23824215081426 21.260689413211832 20-21 22.352208395600297 26.9230852048505 29.26607940058132 21.458626998967883 22-23 22.071167452962342 27.01657032931426 29.107318010210427 21.80494420751297 24-25 21.93809869023141 27.141589308489404 29.211090315831278 21.709221685447908 26-27 21.947088919040283 27.221685793117818 29.144166133839803 21.687059154002092 28-29 21.79133929688546 27.156970598783523 29.228633933756505 21.82305617057451 30-31 22.048611936527056 27.08994876698266 29.172748331339125 21.68869096515116 32-33 21.65559128830501 27.14475847580577 29.304131987701805 21.895518248187415 34-35 21.802635067795148 27.177934082760718 29.149899728874235 21.8695311205699 36-37 21.826784548317416 27.163466936067838 29.242937560278676 21.76681095533607 38-39 21.70663584001112 27.19874024954369 29.30510693330736 21.789516977137822 40-41 21.99035279325778 27.044024479825257 29.182872200405413 21.782750526511553 42-43 21.984545861460376 27.128926585820572 28.963995475802275 21.922532076916777 44-45 21.955702244289412 27.339265906296774 28.79235859688553 21.912673252528283 46-47 22.16822178327847 27.214945927742605 28.438798036258333 22.178034252720586 48-49 22.044170924558117 27.345844838876747 28.400754291182967 22.20922994538217 50-51 21.91758076584028 27.47552376196368 28.450848782901755 22.15604668929429 52-53 22.131741292075006 27.38106387040785 28.488330199188706 21.998864638328442 54-55 22.0605271251341 27.36311500618931 28.319775280750154 22.256582587926435 56-57 22.214122736017234 27.544697120999416 28.12557381173607 22.115606331247275 58-59 22.013614509814897 27.752988475114698 28.329892874397224 21.903504140673185 60-61 22.19415490513707 27.89521671880858 28.063817407612223 21.846810968442124 62-63 21.99370791698266 28.087409538078433 28.047254361779217 21.87162818315969 64-65 21.986855763129455 28.017103640473767 28.01579121246376 21.98024938393302 66-67 22.056063428759863 27.991784491084363 27.895538133738196 22.05661394641757 68-69 22.041027115857435 27.855823849727617 28.036713433205257 22.06643560120969 70-71 22.114896930667747 27.49140658645135 28.15232041906824 22.241376063812663 72-73 22.20020377416751 27.44487336197214 28.089139184504575 22.265783679355774 74-75 22.065648279232253 27.573309489679886 28.065734485959904 22.295307745127953 76-77 22.160077359308843 27.528806734533795 28.035768432489267 22.275347473668095 78-79 22.132952059251313 27.54876785837223 27.985147577152315 22.33313250522415 80-81 22.163835949481584 27.57768697341185 27.959663161775588 22.298813915330975 82-83 22.219610486901015 27.56249795149263 28.00393656171668 22.213954999889676 84-85 22.324425163201166 27.540136400311887 27.92163164778772 22.213806788699227 86-87 22.14570575115949 27.588967367771822 28.017325178993346 22.24800170207534 88-89 22.217605902613062 27.56546997835503 27.939700765406876 22.277223353625036 90-91 22.273045858924352 27.586385901914483 27.920415292441596 22.220152946719562 92-93 22.282225200886487 27.58329237309801 27.934788411516504 22.199694014498995 94-95 22.1692650544855 27.67554546646096 27.908091659995787 22.24709781905775 96-97 22.20803124484359 27.67288717770626 27.904512497862356 22.2145690795878 98-99 22.48476383648623 28.250951589876085 27.94627598847367 21.318008585164016 100-101 23.077920955056893 30.771792944029276 25.29431002066615 20.855976080247682 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2947.0 1 2809.5 2 3393.0 3 4398.5 4 5557.5 5 8036.5 6 10520.0 7 13620.0 8 17398.5 9 19145.5 10 18057.5 11 16486.0 12 17415.5 13 21584.0 14 30555.5 15 41681.5 16 50232.5 17 55253.5 18 55612.0 19 51530.5 20 46273.5 21 42278.5 22 41604.0 23 46071.0 24 55961.0 25 71503.0 26 91914.0 27 114046.0 28 136691.0 29 160996.0 30 183873.5 31 207252.0 32 233481.5 33 260856.0 34 287950.0 35 311103.0 36 337266.0 37 363277.0 38 381943.0 39 397368.5 40 413039.5 41 429297.5 42 438567.0 43 446086.0 44 457930.0 45 477395.0 46 487533.5 47 481842.0 48 475562.5 49 465521.5 50 454071.0 51 441524.5 52 422573.0 53 399950.0 54 377204.0 55 351204.0 56 322716.5 57 292047.5 58 260210.0 59 226312.5 60 189341.5 61 153066.0 62 119571.0 63 91497.0 64 68853.0 65 50839.5 66 37042.5 67 27354.5 68 20382.5 69 14752.0 70 10560.5 71 7484.0 72 5225.0 73 3447.5 74 2202.0 75 1372.5 76 844.5 77 509.0 78 326.5 79 216.5 80 141.5 81 96.5 82 71.5 83 48.5 84 36.5 85 34.0 86 27.5 87 19.0 88 11.5 89 5.0 90 2.5 91 3.0 92 3.0 93 2.0 94 1.5 95 2.5 96 3.0 97 2.5 98 1.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.06116020352400189 6 0.0 7 0.00351545932024727 8 0.0 9 0.0 10-11 0.0 12-13 1.3182972450927265E-5 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 9.23150531651183E-5 28-29 1.3193373337986784E-5 30-31 3.081551906518746E-5 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 4.548519006759918E-6 46-47 0.0 48-49 0.0 50-51 4.661452241883503E-6 52-53 7.182216493974261E-4 54-55 1.749057104587233E-4 56-57 0.0028863906632597097 58-59 0.007109738940563446 60-61 0.003285577933884398 62-63 0.005749360085006654 64-65 0.006217671181826431 66-67 0.004651905776194036 68-69 0.0037312468534821 70-71 0.004995744506389315 72-73 0.0031797165574077887 74-75 0.002918156937448945 76-77 0.002377236787349147 78-79 7.3518472802865E-5 80-81 0.0 82-83 0.0 84-85 0.0 86-87 7.097435117977934E-5 88-89 5.516048086921444E-6 90-91 1.672764823763074E-4 92-93 0.0 94-95 8.551790727874836E-5 96-97 5.775472055320706E-6 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 125.0 20-21 594.0 22-23 1328.0 24-25 1582.0 26-27 3631.0 28-29 8342.0 30-31 20052.0 32-33 25982.0 34-35 36202.0 36-37 56029.0 38-39 66956.0 40-41 66374.0 42-43 76401.0 44-45 91480.0 46-47 92937.0 48-49 84666.0 50-51 76302.0 52-53 73053.0 54-55 78286.0 56-57 82122.0 58-59 82387.0 60-61 80295.0 62-63 79527.0 64-65 89124.0 66-67 97789.0 68-69 96835.0 70-71 108274.0 72-73 83039.0 74-75 84581.0 76-77 89441.0 78-79 92804.0 80-81 93230.0 82-83 89002.0 84-85 88788.0 86-87 92239.0 88-89 96661.0 90-91 98449.0 92-93 97373.0 94-95 106530.0 96-97 170298.0 98-99 947559.0 100-101 7571645.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.99587908371298 #Duplication Level Percentage of deduplicated Percentage of total 1 89.74659972165931 76.28091138116544 2 7.216269484285502 12.267063370436365 3 1.6863487893817901 4.299980933857812 4 0.6174881250961163 2.0993578406519253 5 0.28611064163215955 1.2159112750365282 6 0.14927651512847348 0.761273317793867 7 0.08598354840198809 0.5115773098214773 8 0.05195812009193628 0.3532980874201003 9 0.03592336358066636 0.2748004080464319 >10 0.12045260358777754 1.5983810420882452 >50 0.002733694680905444 0.15839445243464217 >100 7.866106140879928E-4 0.11214117325937399 >500 1.719560604503821E-5 0.011253978521749284 >1k 5.158625321981328E-5 0.05565542946598148 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.6365944901854527E-5 0.0 8.788648300618175E-6 8.788648300618175E-6 3 0.0 2.6365944901854527E-5 0.0 8.788648300618175E-6 8.788648300618175E-6 4 0.0 7.909783470556358E-5 0.0 8.788648300618175E-6 8.788648300618175E-6 5 0.0 7.909783470556358E-5 0.0 8.788648300618175E-6 8.788648300618175E-6 6 0.0 9.667513130679994E-5 0.0 8.788648300618175E-6 2.6365944901854527E-5 7 0.0 9.667513130679994E-5 0.0 8.788648300618175E-6 2.6365944901854527E-5 8 0.0 1.0546377960741811E-4 0.0 8.788648300618175E-6 2.6365944901854527E-5 9 0.0 1.5819566941112717E-4 0.0 8.788648300618175E-6 2.6365944901854527E-5 10-11 4.3943241503090876E-6 1.6258999356143626E-4 0.0 3.9548917352781786E-5 2.6365944901854527E-5 12-13 8.788648300618175E-6 1.757729660123635E-4 0.0 4.394324150309088E-5 2.6365944901854527E-5 14-15 8.788648300618175E-6 2.680537731688544E-4 0.0 4.833756565339997E-5 2.6365944901854527E-5 16-17 1.757729660123635E-5 2.724480973191635E-4 0.0 5.2731889803709054E-5 2.6365944901854527E-5 18-19 1.757729660123635E-5 2.900253939203998E-4 0.0 6.152053810432723E-5 2.6365944901854527E-5 20-21 1.757729660123635E-5 2.9881404222101797E-4 0.0 7.470351055525449E-5 2.6365944901854527E-5 22-23 1.757729660123635E-5 3.4275728372410883E-4 0.0 8.349215885587266E-5 2.6365944901854527E-5 24-25 1.757729660123635E-5 3.603345803253452E-4 0.0 8.788648300618175E-5 2.6365944901854527E-5 26-27 1.757729660123635E-5 3.7791187692658157E-4 0.0 1.1864675205834537E-4 2.6365944901854527E-5 28-29 1.757729660123635E-5 3.8230620107689066E-4 0.0 3.647289044756543E-4 2.6365944901854527E-5 30-31 1.757729660123635E-5 4.2185511842967243E-4 0.0 0.0010853980651263449 2.6365944901854527E-5 32-33 1.757729660123635E-5 4.306437667302906E-4 0.0 0.002522342062277416 3.51545932024727E-5 34-35 1.757729660123635E-5 4.877699806843088E-4 0.0 0.004447056040112797 3.51545932024727E-5 36-37 1.757729660123635E-5 5.580791670892542E-4 0.0 0.007329732682715559 3.51545932024727E-5 38-39 1.757729660123635E-5 5.888394361414178E-4 0.0 0.011618593053417229 3.51545932024727E-5 40-41 1.757729660123635E-5 6.767259191475996E-4 0.0 0.016215056114640535 3.51545932024727E-5 42-43 1.757729660123635E-5 6.98697539899145E-4 0.0 0.020565437023446532 3.51545932024727E-5 44-45 1.757729660123635E-5 7.690067263040905E-4 0.0 0.025605726823851056 3.51545932024727E-5 46-47 1.757729660123635E-5 8.085556436568722E-4 0.0 0.031151363901541124 3.9548917352781786E-5 48-49 1.757729660123635E-5 8.173442919574903E-4 0.0 0.03687277394524356 6.152053810432723E-5 50-51 2.197162075154544E-5 9.403853681661449E-4 0.0 0.04252826912669136 6.152053810432723E-5 52-53 2.6365944901854527E-5 9.49174016466763E-4 0.0 0.04785418999686597 6.591486225463632E-5 54-55 2.6365944901854527E-5 9.53568340617072E-4 0.0 0.05375137300658077 7.470351055525449E-5 56-57 2.6365944901854527E-5 9.755399613686175E-4 0.0 0.05937610791897639 7.909783470556358E-5 58-59 2.6365944901854527E-5 9.799342855189267E-4 0.0 0.06523374201133841 7.909783470556358E-5 60-61 3.0760269052163615E-5 0.001001905906270472 0.0 0.07074861881997632 7.909783470556358E-5 62-63 3.51545932024727E-5 0.0010150888787213994 0.0 0.07593831564149135 7.909783470556358E-5 64-65 3.9548917352781786E-5 0.0011688902239822174 0.0 0.08118074435281009 7.909783470556358E-5 66-67 4.394324150309088E-5 0.0011732845481325265 0.0 0.08647590495393254 7.909783470556358E-5 68-69 4.394324150309088E-5 0.0011952561688840719 0.0 0.09185455771391086 7.909783470556358E-5 70-71 4.394324150309088E-5 0.0012172277896356173 0.0 0.0969959169697725 7.909783470556358E-5 72-73 4.394324150309088E-5 0.0012260164379362356 0.0 0.10075745844243708 1.0546377960741811E-4 74-75 4.394324150309088E-5 0.0012348050862368539 0.0 0.10395213209971178 1.0546377960741811E-4 76-77 4.394324150309088E-5 0.0012787483277399447 0.0 0.10679965414911208 1.098581037577272E-4 78-79 4.394324150309088E-5 0.0013226915692430355 0.0 0.10948458620495093 1.1425242790803629E-4 80-81 4.394324150309088E-5 0.0013314802175436536 0.0 0.11065347642893314 1.1864675205834537E-4 82-83 4.394324150309088E-5 0.0013402688658442719 0.0 0.11114124640961745 1.3182972450927265E-4 84-85 4.394324150309088E-5 0.0013534518382951992 0.0 0.1115982561212496 1.3182972450927265E-4 86-87 4.394324150309088E-5 0.0013710291348964353 0.0 0.11177402908726197 1.406183728098908E-4 88-89 4.394324150309088E-5 0.0014281553488504537 0.0 0.11182676097706568 1.406183728098908E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15865 0.0 49.87861 1 GTATCAA 29815 0.0 39.3331 1 TCAACGC 35815 0.0 32.140038 4 ATCAACG 36035 0.0 31.871819 3 CTTATAC 9380 0.0 31.624565 1 TATCAAC 36900 0.0 31.417656 2 CAACGCA 36855 0.0 31.197891 5 AACGCAG 38000 0.0 30.353355 6 ACGCAGA 43425 0.0 26.471806 7 CGCAGAG 43860 0.0 26.227585 8 TATACAC 13730 0.0 24.849049 3 GTGGTAT 7745 0.0 23.951857 1 TGGTATC 7465 0.0 23.517954 2 GCAGAGT 50785 0.0 22.727795 9 TTATACA 14405 0.0 22.06365 2 GAGTACT 31010 0.0 20.261963 12-13 ACATCTC 15300 0.0 19.516659 8 TATGCCG 8660 0.0 19.507519 42-43 CAGAGTA 50005 0.0 19.43114 10-11 ACACATC 15635 0.0 19.127138 6 >>END_MODULE