Basic Statistics
Measure | Value |
---|---|
Filename | SRR2139687_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 11220790 |
Sequences flagged as poor quality | 0 |
Sequence length | 19-101 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 14985 | 0.0 | 50.867313 | 1 |
GTATCAA | 28465 | 0.0 | 39.30327 | 1 |
TCAACGC | 34490 | 0.0 | 31.949383 | 4 |
ATCAACG | 34735 | 0.0 | 31.711603 | 3 |
TATCAAC | 35890 | 0.0 | 31.02781 | 2 |
CAACGCA | 35550 | 0.0 | 30.9846 | 5 |
AACGCAG | 36645 | 0.0 | 30.0856 | 6 |
ACGCAGA | 41755 | 0.0 | 26.279743 | 7 |
CGCAGAG | 42455 | 0.0 | 25.825203 | 8 |
TGGTATC | 6945 | 0.0 | 24.859512 | 2 |
GTGGTAT | 7530 | 0.0 | 24.017282 | 1 |
GCAGAGT | 49285 | 0.0 | 22.263805 | 9 |
GAGTACT | 30110 | 0.0 | 20.16205 | 12-13 |
CTTATAC | 7615 | 0.0 | 20.008276 | 1 |
GTACATG | 33615 | 0.0 | 19.517101 | 1 |
TACATGG | 33700 | 0.0 | 19.186102 | 2 |
CAGAGTA | 48555 | 0.0 | 19.036419 | 10-11 |
AGAGTAC | 45280 | 0.0 | 18.951105 | 10-11 |
ACATGGG | 34055 | 0.0 | 18.238317 | 3 |
GTACTTT | 33660 | 0.0 | 17.978409 | 14-15 |