##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139687_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11220790 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.88157527232931 33.0 31.0 33.0 25.0 34.0 2 31.860951323391667 33.0 32.0 33.0 28.0 34.0 3 31.654449642137497 33.0 31.0 33.0 28.0 34.0 4 32.2439466383383 33.0 33.0 34.0 30.0 34.0 5 32.27672151426058 33.0 33.0 34.0 31.0 34.0 6 35.62580914534538 38.0 36.0 38.0 29.0 38.0 7 36.293345744818325 38.0 37.0 38.0 33.0 38.0 8 36.44717029727853 38.0 37.0 38.0 34.0 38.0 9 36.6389956500389 38.0 38.0 38.0 34.0 38.0 10-11 36.706218902590635 38.0 38.0 38.0 34.0 38.0 12-13 36.748344100549076 38.0 38.0 38.0 34.0 38.0 14-15 36.79033771240706 38.0 38.0 38.0 35.0 38.0 16-17 36.77729420121044 38.0 38.0 38.0 35.0 38.0 18-19 36.77889328647983 38.0 38.0 38.0 35.0 38.0 20-21 36.804006456001645 38.0 38.0 38.0 35.0 38.0 22-23 36.779104779083745 38.0 38.0 38.0 35.0 38.0 24-25 36.78671188779175 38.0 38.0 38.0 35.0 38.0 26-27 36.75064653184022 38.0 38.0 38.0 35.0 38.0 28-29 36.67643749438336 38.0 38.0 38.0 34.0 38.0 30-31 36.70138022700449 38.0 38.0 38.0 34.0 38.0 32-33 36.697174756733645 38.0 38.0 38.0 34.0 38.0 34-35 36.6857533570997 38.0 38.0 38.0 34.0 38.0 36-37 36.659994805553524 38.0 38.0 38.0 34.0 38.0 38-39 36.645379299825535 38.0 38.0 38.0 34.0 38.0 40-41 36.643011833417994 38.0 38.0 38.0 34.0 38.0 42-43 36.61371484313446 38.0 38.0 38.0 34.0 38.0 44-45 36.5541801532287 38.0 38.0 38.0 34.0 38.0 46-47 36.4385442652368 38.0 38.0 38.0 34.0 38.0 48-49 36.39086888261101 38.0 38.0 38.0 34.0 38.0 50-51 36.40362441786818 38.0 38.0 38.0 34.0 38.0 52-53 36.408035966760295 38.0 38.0 38.0 34.0 38.0 54-55 36.33438672064128 38.0 38.0 38.0 33.0 38.0 56-57 36.354240935440984 38.0 38.0 38.0 34.0 38.0 58-59 36.29987761403706 38.0 38.0 38.0 33.5 38.0 60-61 36.314894918658425 38.0 38.0 38.0 33.0 38.0 62-63 36.332517997149615 38.0 38.0 38.0 33.0 38.0 64-65 36.32303580174164 38.0 38.0 38.0 33.5 38.0 66-67 36.30406880148134 38.0 38.0 38.0 33.0 38.0 68-69 36.28555542471689 38.0 38.0 38.0 33.0 38.0 70-71 36.28585855905663 38.0 38.0 38.0 33.0 38.0 72-73 36.277986081796406 38.0 37.5 38.0 33.0 38.0 74-75 36.2400690419619 38.0 37.0 38.0 33.0 38.0 76-77 36.2312189680929 38.0 37.0 38.0 33.0 38.0 78-79 36.21757168986442 38.0 37.0 38.0 33.0 38.0 80-81 36.22313641810378 38.0 37.0 38.0 33.0 38.0 82-83 36.19348795668169 38.0 37.0 38.0 33.0 38.0 84-85 36.16023438152648 38.0 37.0 38.0 33.0 38.0 86-87 36.16040560144606 38.0 37.0 38.0 33.0 38.0 88-89 36.16636444494125 38.0 37.0 38.0 33.0 38.0 90-91 36.112317406450494 38.0 37.0 38.0 33.0 38.0 92-93 36.13077472619052 38.0 37.0 38.0 33.0 38.0 94-95 36.08645654574108 38.0 37.0 38.0 33.0 38.0 96-97 36.11398373957367 38.0 37.0 38.0 33.0 38.0 98-99 36.16347730693552 38.0 37.0 38.0 33.0 38.0 100-101 35.62277323815334 38.0 36.0 38.0 30.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 5.0 18 19.0 19 44.0 20 117.0 21 544.0 22 2400.0 23 7370.0 24 16751.0 25 31615.0 26 52763.0 27 79192.0 28 112335.0 29 151169.0 30 195172.0 31 246387.0 32 313619.0 33 405855.0 34 554551.0 35 854528.0 36 1719477.0 37 6476877.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.04072797013401 20.62768307757297 14.175374461156478 25.15621449113654 2 14.164680026985621 20.872790596740515 42.627711596064096 22.33481778020977 3 17.919620632771846 26.194528192756483 29.901236900432142 25.98461427403953 4 12.494877811633584 18.607076685331425 38.928141423197474 29.969904079837516 5 13.725691627982298 37.0763446429374 35.348540980460555 13.849422748619741 6 29.542946619623038 38.212059935173905 18.789987157766966 13.455006287436088 7 26.343992872963568 32.927794194345786 22.90110345717593 17.827109475514717 8 24.061122256097832 37.06608001753887 20.99702427369196 17.875773452671336 9 25.247839055895348 17.385166285083315 21.399143910544623 35.96785074847671 10-11 23.884093722456264 27.14486680527842 28.746768275673993 20.224271196591328 12-13 24.88828437606819 24.563142370686126 28.990999251879735 21.557574001365946 14-15 22.0570788687784 25.920683837768998 26.79614358703799 25.22609370641461 16-17 21.45763355343073 29.13096136724776 27.43677138597193 21.974633693349578 18-19 21.453966253712974 28.062284384611065 29.448608342193378 21.035141019482587 20-21 22.236232194434884 27.13617095873573 29.442304180559663 21.185292666269717 22-23 21.956035566276245 27.11036394273645 29.273763391676994 21.659837099310312 24-25 21.717531282989192 27.248706772489385 29.401704502962346 21.632057441559077 26-27 21.685639733145436 27.399152246471964 29.342599416421134 21.57260860396147 28-29 21.54587903595365 27.36751034011472 29.449553779031657 21.637056844899973 30-31 21.862214114885077 27.224572147701938 29.26364015231731 21.649573585095673 32-33 21.722359583110066 27.33282744135554 29.319710953712224 21.62510202182217 34-35 21.815452390160242 27.446480475734088 29.28415919829166 21.45390793581401 36-37 21.72587906361506 27.327107820648422 29.220859526867876 21.72615358886864 38-39 21.59123076282644 27.447304216567638 29.33665574079068 21.624809279815242 40-41 21.854102535436127 27.304795853746384 29.26433004114717 21.576771569670324 42-43 21.802634623216505 27.337640990434082 29.073135490386605 21.78658889596281 44-45 21.802394282990917 27.49683608022749 28.942466940424623 21.75830269635697 46-47 21.975549349629237 27.474638982787546 28.595746519198613 21.954065148384604 48-49 21.84179685840217 27.57986125766923 28.601913703834665 21.976428180093937 50-51 21.82572476653504 27.689182515924976 28.51665423239616 21.968438485143828 52-53 21.988629107518847 27.64100673685361 28.45591895010663 21.91444520552092 54-55 21.964101301802245 27.604937031394556 28.37743343016329 22.05352823663991 56-57 21.997352371732816 27.7224733785092 28.3259825750242 21.954191674733785 58-59 21.906777239530186 27.846331237500905 28.411482260270287 21.835409262698622 60-61 22.01818318867368 27.87392725464966 28.331336071048874 21.77655348562778 62-63 21.910484414807048 27.933404744015718 28.312020901810182 21.844089939367052 64-65 21.88974221050731 27.904845374759084 28.266685455154878 21.93872695957873 66-67 21.957314734746987 27.9358865824477 28.145064170279305 21.961734512526007 68-69 21.896884673585088 27.861030401420717 28.249380964414428 21.992703960579767 70-71 21.952661912135003 27.563025737524498 28.36191629192627 22.12239605841423 72-73 22.03860526738414 27.56541743563278 28.293413577973116 22.102563719009964 74-75 21.939838427576927 27.692033613938527 28.225475165234997 22.142652793249546 76-77 22.031380846625513 27.646209101815217 28.18522944127243 22.13718061028684 78-79 21.960880041787025 27.69494359782091 28.151007915492883 22.19316844489918 80-81 22.007143808199626 27.724100188543538 28.13593628579376 22.132819717463075 82-83 22.045032145614957 27.68546503956939 28.218775585300666 22.050727229514987 84-85 22.155889913831107 27.667198858786367 28.072727052585755 22.104184174796767 86-87 21.993704804006157 27.73540830939187 28.15212315546977 22.1187637311322 88-89 22.06542761506671 27.70950531767792 28.093962817664153 22.131104249591214 90-91 22.123584722876423 27.7505850882192 28.080433365852436 22.045396823051934 92-93 22.15615302541595 27.728511131815242 28.05914955065827 22.056186292110542 94-95 22.042050452823485 27.827751750232295 28.037276204188654 22.09292159275557 96-97 22.044414352844793 27.84470763205723 28.067476838611725 22.04340117648625 98-99 22.31433256439548 28.391376624431096 28.094913068007333 21.199377743166085 100-101 22.897357167946662 30.898035814822943 25.500739312972392 20.703867704258 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2954.0 1 2740.0 2 3334.0 3 4464.0 4 5566.0 5 7837.0 6 10193.0 7 13332.5 8 17151.5 9 19026.0 10 18091.5 11 16763.5 12 17681.0 13 21286.5 14 29603.5 15 40013.5 16 48191.5 17 52858.0 18 52852.0 19 49302.0 20 44728.5 21 41196.5 22 41230.5 23 46428.5 24 57063.5 25 73333.5 26 94148.5 27 116830.0 28 140154.5 29 165080.0 30 190113.5 31 215559.5 32 242809.0 33 270406.5 34 296861.0 35 322766.0 36 350612.5 37 373960.0 38 391594.0 39 406515.5 40 420358.5 41 433558.5 42 441428.5 43 447693.5 44 454603.5 45 464558.0 46 469195.0 47 466222.5 48 463147.0 49 454017.0 50 441177.0 51 426173.0 52 406687.0 53 385635.5 54 363597.5 55 337438.5 56 308050.0 57 277989.0 58 247707.0 59 214961.0 60 178791.5 61 144204.5 62 113037.0 63 86912.5 64 66108.0 65 48705.0 66 35312.0 67 26245.5 68 19441.5 69 13881.5 70 9967.0 71 7080.5 72 4786.0 73 3072.5 74 1934.5 75 1219.0 76 777.5 77 483.5 78 300.0 79 195.0 80 139.0 81 91.5 82 59.5 83 40.0 84 27.5 85 19.5 86 15.0 87 15.5 88 12.5 89 7.5 90 4.5 91 2.5 92 1.5 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.06200989413401374 6 0.0 7 0.003725227902848195 8 0.0 9 0.0 10-11 0.0 12-13 4.456014237856693E-6 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 4.903347443978587E-5 28-29 3.121610404916126E-5 30-31 4.463953707728702E-5 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 1.8459944942291214E-5 46-47 0.0 48-49 0.0 50-51 0.0 52-53 9.104868444661562E-4 54-55 1.8727615997052755E-4 56-57 0.0030783176277826103 58-59 0.00805655339377066 60-61 0.0032029301251027117 62-63 0.005579681547487231 64-65 0.006565205490931866 66-67 0.005085513053346578 68-69 0.003682674671093347 70-71 0.005314199061459973 72-73 0.0033188317525254672 74-75 0.0028660520949766698 76-77 0.0026335546700301422 78-79 5.874361296717193E-5 80-81 0.0 82-83 0.0 84-85 0.0 86-87 3.8914124698756035E-5 88-89 0.0 90-91 1.818187809937101E-4 92-93 0.0 94-95 8.138445656866156E-5 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 115.0 20-21 547.0 22-23 1224.0 24-25 1485.0 26-27 3539.0 28-29 8225.0 30-31 20192.0 32-33 26380.0 34-35 35881.0 36-37 56164.0 38-39 66881.0 40-41 66560.0 42-43 77020.0 44-45 92490.0 46-47 92684.0 48-49 86102.0 50-51 78003.0 52-53 75124.0 54-55 80969.0 56-57 83757.0 58-59 83798.0 60-61 82445.0 62-63 80505.0 64-65 87636.0 66-67 93500.0 68-69 93656.0 70-71 97835.0 72-73 84109.0 74-75 86551.0 76-77 91220.0 78-79 94320.0 80-81 94669.0 82-83 89684.0 84-85 90364.0 86-87 94068.0 88-89 97989.0 90-91 99844.0 92-93 98268.0 94-95 106818.0 96-97 168494.0 98-99 929235.0 100-101 7422440.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.15409616704262 #Duplication Level Percentage of deduplicated Percentage of total 1 90.04794249923796 76.67951155224434 2 6.907522539245459 11.764076771658445 3 1.662985815648792 4.248301622105552 4 0.6276562344148575 2.137899973808265 5 0.28067839032839026 1.1950457321017236 6 0.15352103072467926 0.7843766768395705 7 0.09388916170136732 0.5596532693192874 8 0.05849812200603594 0.39850837655147026 9 0.03478236283943706 0.2665674603131754 >10 0.1294041955748331 1.689785923376115 >50 0.002331861849672411 0.1294919629896338 >100 7.359181180160379E-4 0.09741559449028744 >500 1.7289459936862295E-5 0.012926515973747464 >1k 3.4578850593006376E-5 0.036438568228379715 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 8.912028475713385E-6 0.0 0.0 8.912028475713385E-6 3 0.0 8.912028475713385E-6 0.0 1.782405695142677E-5 8.912028475713385E-6 4 0.0 1.782405695142677E-5 0.0 1.782405695142677E-5 8.912028475713385E-6 5 0.0 1.782405695142677E-5 0.0 1.782405695142677E-5 8.912028475713385E-6 6 4.456014237856693E-5 1.782405695142677E-5 0.0 1.782405695142677E-5 1.782405695142677E-5 7 4.456014237856693E-5 1.782405695142677E-5 0.0 3.564811390285354E-5 2.6736085427140157E-5 8 5.3472170854280314E-5 1.782405695142677E-5 0.0 3.564811390285354E-5 2.6736085427140157E-5 9 5.3472170854280314E-5 7.129622780570708E-5 0.0 3.564811390285354E-5 2.6736085427140157E-5 10-11 5.3472170854280314E-5 7.129622780570708E-5 0.0 7.129622780570708E-5 2.6736085427140157E-5 12-13 5.3472170854280314E-5 7.129622780570708E-5 0.0 7.129622780570708E-5 3.1192099664996845E-5 14-15 6.23841993299937E-5 1.3368042713570079E-4 0.0 7.129622780570708E-5 7.12962278057071E-5 16-17 9.803231323284724E-5 1.5150448408712757E-4 0.0 7.129622780570708E-5 1.247683986599874E-4 18-19 9.803231323284724E-5 1.782405695142677E-4 0.0 7.129622780570708E-5 1.247683986599874E-4 20-21 1.0694434170856063E-4 1.9606462646569448E-4 0.0 8.020825628142047E-5 1.247683986599874E-4 22-23 1.1585637018427402E-4 2.0497665494140785E-4 0.0 1.2031238442213071E-4 1.3368042713570079E-4 24-25 1.292244128978441E-4 2.361687546064047E-4 0.0 1.5596049832498427E-4 1.6041651256284094E-4 26-27 1.3813644137355746E-4 2.5844882579568817E-4 0.0 2.0497665494140788E-4 1.6041651256284094E-4 28-29 1.4259245561141416E-4 2.5844882579568817E-4 0.0 4.678814949749527E-4 1.782405695142677E-4 30-31 1.4259245561141416E-4 2.9409693969854173E-4 0.0 0.0013590843425462912 2.0052064070355118E-4 32-33 1.4259245561141416E-4 2.9409693969854173E-4 0.0 0.0028964092546068503 2.1388868341712126E-4 34-35 1.4259245561141416E-4 3.3420106783925196E-4 0.0 0.004857055519263796 2.2280071189283463E-4 36-37 1.4259245561141416E-4 3.787612102178189E-4 0.0 0.007873777158292777 2.3171274036854804E-4 38-39 1.4259245561141416E-4 4.188653383585291E-4 0.0 0.012494663922950167 2.3616875460640474E-4 40-41 1.4704846984927086E-4 4.4560142378566927E-4 0.0 0.017387367556116813 2.539928115578315E-4 42-43 1.5150448408712757E-4 4.678814949749527E-4 0.0 0.02251623994388987 2.6736085427140157E-4 44-45 1.5150448408712757E-4 5.525457654942298E-4 0.0 0.028424914823287843 2.6736085427140157E-4 46-47 1.5150448408712757E-4 6.193859790620803E-4 0.0 0.034538566357627226 2.6736085427140157E-4 48-49 1.5150448408712757E-4 6.327540217756504E-4 0.0 0.04042496116583592 2.76272882747115E-4 50-51 1.7378455527641102E-4 7.664344489113511E-4 0.0 0.04665892508459743 2.851849112228283E-4 52-53 1.7824056951426772E-4 7.798024916249212E-4 0.0 0.0526611762629904 2.9409693969854173E-4 54-55 1.7824056951426772E-4 7.931705343384914E-4 0.0 0.05881493192547049 3.119209966499685E-4 56-57 1.7824056951426772E-4 7.931705343384914E-4 0.0 0.06509791200084843 3.208330251256819E-4 58-59 1.7824056951426772E-4 7.97626548576348E-4 0.0 0.0716749890159249 3.386570820771087E-4 60-61 1.9606462646569448E-4 8.199066197656315E-4 0.0 0.07787776083502142 3.564811390285354E-4 62-63 2.1388868341712126E-4 8.377306767170583E-4 0.0 0.08402260446902579 3.653931675042488E-4 64-65 2.1388868341712126E-4 9.624990753770457E-4 0.0 0.08951687002430311 3.653931675042488E-4 66-67 2.1388868341712126E-4 9.669550896149023E-4 0.0 0.09567953771525892 3.743051959799622E-4 68-69 2.1388868341712126E-4 9.803231323284724E-4 0.0 0.10214521437438898 3.876732386935323E-4 70-71 2.1388868341712126E-4 0.001002603203517756 0.0 0.10755481565914699 3.9212925293138895E-4 72-73 2.6736085427140157E-4 0.0010204272604691826 0.0 0.11171673295730514 4.0104128140710236E-4 74-75 2.6736085427140157E-4 0.0010694434170856063 0.0 0.11510775979231408 4.0104128140710236E-4 76-77 2.6736085427140157E-4 0.0011541076876048833 0.0 0.11818240961643521 4.0549729564495903E-4 78-79 2.6736085427140157E-4 0.0011852997872698803 0.0 0.12094068242966849 4.0995330988281576E-4 80-81 2.6736085427140157E-4 0.001189755801507737 0.0 0.12216163033084124 4.1440932412067244E-4 82-83 2.6736085427140157E-4 0.001203123844221307 0.0 0.12274091218176261 4.277773668342425E-4 84-85 2.6736085427140157E-4 0.0012120358726970205 0.0 0.12320879367673757 4.322333810720992E-4 86-87 2.6736085427140157E-4 0.0012209479011727339 0.0 0.12335138613234897 4.366893953099559E-4 88-89 2.76272882747115E-4 0.0012744200720270142 0.0 0.1234315943886304 4.366893953099559E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14985 0.0 50.867313 1 GTATCAA 28465 0.0 39.30327 1 TCAACGC 34490 0.0 31.949383 4 ATCAACG 34735 0.0 31.711603 3 TATCAAC 35890 0.0 31.02781 2 CAACGCA 35550 0.0 30.9846 5 AACGCAG 36645 0.0 30.0856 6 ACGCAGA 41755 0.0 26.279743 7 CGCAGAG 42455 0.0 25.825203 8 TGGTATC 6945 0.0 24.859512 2 GTGGTAT 7530 0.0 24.017282 1 GCAGAGT 49285 0.0 22.263805 9 GAGTACT 30110 0.0 20.16205 12-13 CTTATAC 7615 0.0 20.008276 1 GTACATG 33615 0.0 19.517101 1 TACATGG 33700 0.0 19.186102 2 CAGAGTA 48555 0.0 19.036419 10-11 AGAGTAC 45280 0.0 18.951105 10-11 ACATGGG 34055 0.0 18.238317 3 GTACTTT 33660 0.0 17.978409 14-15 >>END_MODULE