##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139686_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11543720 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.880323673824382 33.0 31.0 33.0 25.0 34.0 2 31.861920420800228 33.0 32.0 33.0 28.0 34.0 3 31.635662853915374 33.0 31.0 33.0 28.0 34.0 4 32.23472173614745 33.0 33.0 34.0 30.0 34.0 5 32.27041958744668 33.0 33.0 34.0 31.0 34.0 6 35.607383148586415 38.0 36.0 38.0 29.0 38.0 7 36.286393380989836 38.0 37.0 38.0 33.0 38.0 8 36.442356536714335 38.0 37.0 38.0 34.0 38.0 9 36.633787808436104 38.0 38.0 38.0 34.0 38.0 10-11 36.702896509963864 38.0 38.0 38.0 34.0 38.0 12-13 36.7465810414667 38.0 38.0 38.0 34.0 38.0 14-15 36.79101299234562 38.0 38.0 38.0 35.0 38.0 16-17 36.77971035333498 38.0 38.0 38.0 35.0 38.0 18-19 36.781640407078484 38.0 38.0 38.0 35.0 38.0 20-21 36.806385471332376 38.0 38.0 38.0 35.0 38.0 22-23 36.783225734023034 38.0 38.0 38.0 35.0 38.0 24-25 36.79150142475966 38.0 38.0 38.0 35.0 38.0 26-27 36.7568276122404 38.0 38.0 38.0 35.0 38.0 28-29 36.680703074105566 38.0 38.0 38.0 34.0 38.0 30-31 36.70574919853608 38.0 38.0 38.0 34.0 38.0 32-33 36.705134805016016 38.0 38.0 38.0 34.0 38.0 34-35 36.69481698743365 38.0 38.0 38.0 34.0 38.0 36-37 36.66863650525899 38.0 38.0 38.0 34.0 38.0 38-39 36.66484495433362 38.0 38.0 38.0 34.0 38.0 40-41 36.6518617952466 38.0 38.0 38.0 34.0 38.0 42-43 36.6185028036917 38.0 38.0 38.0 34.0 38.0 44-45 36.560328937820415 38.0 38.0 38.0 34.0 38.0 46-47 36.445661527144736 38.0 38.0 38.0 34.0 38.0 48-49 36.40025274324812 38.0 38.0 38.0 34.0 38.0 50-51 36.41346625129506 38.0 38.0 38.0 34.0 38.0 52-53 36.420919518438865 38.0 38.0 38.0 34.0 38.0 54-55 36.348872078638934 38.0 38.0 38.0 34.0 38.0 56-57 36.368755084683926 38.0 38.0 38.0 34.0 38.0 58-59 36.31824613443397 38.0 38.0 38.0 33.5 38.0 60-61 36.33400145989614 38.0 38.0 38.0 33.0 38.0 62-63 36.35214416407065 38.0 38.0 38.0 34.0 38.0 64-65 36.34198209845928 38.0 38.0 38.0 33.5 38.0 66-67 36.32595087349431 38.0 38.0 38.0 33.0 38.0 68-69 36.308872700897034 38.0 38.0 38.0 33.0 38.0 70-71 36.309902692448375 38.0 38.0 38.0 33.0 38.0 72-73 36.302710963277235 38.0 38.0 38.0 33.0 38.0 74-75 36.26583490405741 38.0 37.5 38.0 33.0 38.0 76-77 36.259597340928295 38.0 37.0 38.0 33.0 38.0 78-79 36.25044503349008 38.0 37.0 38.0 33.0 38.0 80-81 36.254644934659495 38.0 37.0 38.0 33.0 38.0 82-83 36.224490445919116 38.0 37.0 38.0 33.0 38.0 84-85 36.19052472696052 38.0 37.0 38.0 33.0 38.0 86-87 36.192810615930824 38.0 37.0 38.0 33.0 38.0 88-89 36.19770918542628 38.0 37.0 38.0 33.0 38.0 90-91 36.14300232203917 38.0 37.0 38.0 33.0 38.0 92-93 36.16404354711425 38.0 37.0 38.0 33.0 38.0 94-95 36.11747261152448 38.0 37.0 38.0 33.0 38.0 96-97 36.1473080157849 38.0 37.0 38.0 33.0 38.0 98-99 36.19193693078183 38.0 37.0 38.0 33.0 38.0 100-101 35.66935940017572 38.0 36.0 38.0 30.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 11.0 19 33.0 20 128.0 21 538.0 22 2361.0 23 7376.0 24 16599.0 25 31534.0 26 52377.0 27 79730.0 28 113651.0 29 153196.0 30 198625.0 31 251164.0 32 320302.0 33 415286.0 34 569258.0 35 874124.0 36 1764513.0 37 6692912.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.12256014525647 20.677372632045824 14.201271340607708 24.998795882090004 2 14.108173101911689 20.92679829379091 42.65489807445087 22.310130529846532 3 17.966071595638148 26.342530830616127 29.795915008333534 25.895482565412188 4 12.479997782343993 18.494124944125463 39.138102795286095 29.88777447824445 5 13.706613405580903 37.08962445525677 35.3557122583826 13.848049880779723 6 29.497406381998175 38.2787610926114 18.83022976995284 13.39360275543759 7 26.220631840990833 32.99865965352667 23.1162206526323 17.664487852850193 8 24.020021275637315 37.07061501838229 21.06295024480843 17.846413461171963 9 25.200966412906755 17.45767395605576 21.562581212988537 35.778778418048944 10-11 23.864902301857633 27.164501564487008 28.799212905371924 20.17138322828343 12-13 24.90647727188069 24.616748260828963 29.073449299437147 21.4033251678532 14-15 22.0035265928141 25.954527656595967 26.93522538661714 25.10672036397279 16-17 21.403854216838248 29.12354509638141 27.561267078550067 21.911333608230276 18-19 21.36987470243561 28.13159016330957 29.578874920736126 20.919660213518693 20-21 22.19188043334052 27.189157902091182 29.563011968958598 21.0559496956097 22-23 21.939583463826306 27.080859381463736 29.440822118301448 21.538735036408514 24-25 21.645916644904645 27.244393586491338 29.50528414209782 21.604405626506193 26-27 21.639219375520867 27.389211597977166 29.41718337142958 21.55438565507239 28-29 21.591905473698702 27.4124080421635 29.472065051938873 21.52362143219893 30-31 21.84470564957214 27.24803297033737 29.374078209090708 21.53318317099978 32-33 21.644447939862122 27.422364664840092 29.326532572184394 21.606654823113388 34-35 21.782004131800946 27.422791121413738 29.318199668727164 21.477005078058156 36-37 21.765601330858573 27.32463521153411 29.284300396916972 21.625463060690343 38-39 21.60719690038147 27.45972836108726 29.378563083289933 21.554511655241342 40-41 21.846536712487776 27.336386618358638 29.25532606989853 21.561750599255056 42-43 21.731789072051537 27.46804527861318 29.036414396421804 21.763751252913483 44-45 21.832606476381365 27.501476020405807 28.901168257980952 21.76474924523188 46-47 21.916259400389084 27.554490180011808 28.627383093250458 21.90186732634865 48-49 21.866282423485245 27.66635346264798 28.592938933614715 21.874425180252064 50-51 21.832853345703846 27.79508129489059 28.46124613017018 21.910819229235383 52-53 22.01883231247862 27.723458383653217 28.343561187500228 21.914148116367937 54-55 21.96706836763774 27.653817220255167 28.374315694005553 22.004798718101544 56-57 21.93100721870231 27.749335752095906 28.390390311000623 21.929266718201163 58-59 21.922442941493316 27.825642493586184 28.338742952011884 21.91317161290861 60-61 21.953095130741847 27.764768753660057 28.440746108954112 21.841390006643984 62-63 21.945187557149 27.74793841942879 28.41499782547674 21.891876197945468 64-65 21.952002651457697 27.759953906443936 28.316224796714856 21.97181864538351 66-67 21.99713856225733 27.789654447840967 28.20753603369071 22.00567095621099 68-69 21.952086715703224 27.748853062192254 28.298041051275895 22.001019170828627 70-71 21.95336759501302 27.557165113493355 28.36017136093173 22.129295930561895 72-73 22.051009486751454 27.58451087204029 28.273474238589323 22.091005402618926 74-75 21.901069960243188 27.74552289784567 28.218082707306984 22.135324434604158 76-77 22.052071578186 27.67356040158614 28.16470891971402 22.10965910051384 78-79 21.99016484843595 27.72080085938619 28.14310311030979 22.145931181868068 80-81 22.008303393839192 27.73377945465064 28.135805806629392 22.12211134488077 82-83 22.061921965009127 27.705580608314843 28.185142989439253 22.047354437236773 84-85 22.175689487222723 27.73529295032794 28.044242679471516 22.044774882977826 86-87 22.005477633087896 27.767225611929526 28.164691621524124 22.06260513345846 88-89 22.060664762205686 27.748305616514422 28.097930380146664 22.093099241133228 90-91 22.120531178269598 27.773907174899453 28.103220816144418 22.002340830686528 92-93 22.12112799698131 27.76938450191525 28.071081046766327 22.03840645433711 94-95 22.025854328252002 27.825788814187565 28.068126755433386 22.08023010212705 96-97 22.051199442965224 27.833169361082387 28.090947182403823 22.02468401354856 98-99 22.29495766593898 28.435596731246715 28.117478796544 21.15196680627031 100-101 22.874345402716383 30.92358707692755 25.52533880521231 20.676728715143756 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2812.0 1 2752.5 2 3541.5 3 4664.5 4 5880.5 5 8494.0 6 11128.5 7 14208.5 8 17774.0 9 19303.5 10 18046.5 11 16586.5 12 17761.5 13 21970.0 14 30763.5 15 41648.0 16 50174.0 17 55272.0 18 55544.0 19 51684.5 20 46964.5 21 43356.5 22 43118.5 23 48705.0 24 60065.5 25 77653.5 26 100078.5 27 123410.5 28 148584.0 29 175367.5 30 200832.0 31 227307.0 32 256193.0 33 283760.5 34 309024.5 35 333249.5 36 360724.5 37 385428.0 38 402660.5 39 415600.0 40 429199.5 41 442705.5 42 450074.0 43 457216.0 44 465403.0 45 471862.5 46 474753.0 47 474314.0 48 471330.0 49 463385.5 50 452221.0 51 437923.0 52 416955.0 53 393408.5 54 369979.0 55 342821.0 56 313510.0 57 282957.5 58 252060.5 59 219668.5 60 183797.0 61 149371.5 62 117298.0 63 89580.0 64 67631.0 65 49935.5 66 36460.0 67 27302.0 68 20803.0 69 15238.0 70 10863.5 71 7694.0 72 5402.5 73 3655.5 74 2367.0 75 1507.0 76 918.0 77 509.0 78 317.0 79 207.5 80 126.5 81 92.0 82 72.5 83 48.0 84 30.5 85 21.5 86 13.0 87 10.0 88 9.0 89 6.5 90 5.5 91 3.5 92 1.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.06143600156621956 6 0.0 7 0.0037769453867557428 8 0.0 9 0.0 10-11 0.0 12-13 1.7325437553925425E-5 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 8.232490737906309E-5 28-29 2.1673340538418662E-5 30-31 2.6034687923931502E-5 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 1.794689737403241E-5 46-47 0.0 48-49 0.0 50-51 0.0 52-53 8.016209609887683E-4 54-55 1.586875160904474E-4 56-57 0.003415027598456163 58-59 0.008189398063119632 60-61 0.003700259654008512 62-63 0.006509894027020445 64-65 0.0068962673661489135 66-67 0.005255325817221531 68-69 0.004269423976630438 70-71 0.005590492950318571 72-73 0.0035978926714901574 74-75 0.003218249443874821 76-77 0.0025355898204520674 78-79 4.1376304142316284E-5 80-81 0.0 82-83 0.0 84-85 0.0 86-87 8.070369316240649E-5 88-89 5.436553329570877E-6 90-91 1.2642426554372604E-4 92-93 0.0 94-95 7.309322135151952E-5 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 142.0 20-21 529.0 22-23 1227.0 24-25 1596.0 26-27 3594.0 28-29 8416.0 30-31 21244.0 32-33 27196.0 34-35 37480.0 36-37 58398.0 38-39 69347.0 40-41 68828.0 42-43 78836.0 44-45 94639.0 46-47 95239.0 48-49 88017.0 50-51 79356.0 52-53 76691.0 54-55 82077.0 56-57 85476.0 58-59 85505.0 60-61 83403.0 62-63 80067.0 64-65 85530.0 66-67 89566.0 68-69 92345.0 70-71 90999.0 72-73 86380.0 74-75 87716.0 76-77 92748.0 78-79 95631.0 80-81 95835.0 82-83 91348.0 84-85 91549.0 86-87 95052.0 88-89 99833.0 90-91 102467.0 92-93 100130.0 94-95 108990.0 96-97 171629.0 98-99 953127.0 100-101 7685542.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.16897338534139 #Duplication Level Percentage of deduplicated Percentage of total 1 89.44345337444393 75.28363646566596 2 7.2076095548622 12.133141935902577 3 1.8452153083785585 4.659296345434181 4 0.6694720306903187 2.2539509413361554 5 0.32232463514469484 1.3564866818466847 6 0.17001443888854617 0.8585964469160277 7 0.09288984905390518 0.5472910262950567 8 0.06433113517832868 0.4331748483738837 9 0.03826905851522137 0.2898960630884766 >10 0.14237638113169754 1.8483128714337982 >50 0.0032142158542783216 0.1761021306619348 >100 7.763700769787003E-4 0.10514581639742204 >500 0.0 0.0 >1k 5.364778143820541E-5 0.05496842664786215 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.662718776962713E-6 2 0.0 5.1976312661776276E-5 0.0 0.0 8.662718776962713E-6 3 0.0 5.1976312661776276E-5 0.0 0.0 8.662718776962713E-6 4 0.0 1.1261534410051526E-4 0.0 0.0 8.662718776962713E-6 5 0.0 1.1261534410051526E-4 0.0 0.0 8.662718776962713E-6 6 2.5988156330888138E-5 1.1261534410051526E-4 0.0 0.0 4.331359388481356E-5 7 2.5988156330888138E-5 1.1261534410051526E-4 0.0 1.7325437553925425E-5 4.331359388481356E-5 8 2.5988156330888138E-5 1.1261534410051526E-4 0.0 1.7325437553925425E-5 5.1976312661776276E-5 9 2.5988156330888138E-5 2.4255612575495595E-4 0.0 4.331359388481356E-5 6.063903143873899E-5 10-11 2.5988156330888138E-5 2.4255612575495595E-4 0.0 4.331359388481356E-5 6.063903143873899E-5 12-13 2.5988156330888138E-5 2.4255612575495595E-4 0.0 5.1976312661776276E-5 6.063903143873899E-5 14-15 2.5988156330888138E-5 3.6383418863243395E-4 0.0 5.1976312661776276E-5 8.229582838114577E-5 16-17 4.331359388481356E-5 3.8115962618635933E-4 0.0 6.497039082722034E-5 1.1261534410051526E-4 18-19 4.331359388481356E-5 4.1147914190572883E-4 0.0 7.796446899266441E-5 1.2994078165444068E-4 20-21 4.331359388481356E-5 4.6778681395598647E-4 0.0 8.662718776962713E-5 1.3427214104292203E-4 22-23 6.063903143873899E-5 5.457512829486509E-4 0.0 1.082839847120339E-4 1.4293485981988475E-4 24-25 6.063903143873899E-5 6.193843925528339E-4 0.0 1.6459165676229153E-4 1.5592893798532881E-4 26-27 6.063903143873899E-5 6.583666270491661E-4 0.0 2.165679694240678E-4 1.6026029737381016E-4 28-29 6.063903143873899E-5 6.583666270491661E-4 0.0 5.197631266177627E-4 1.6459165676229153E-4 30-31 6.063903143873899E-5 6.843547833800543E-4 0.0 0.0016285911300689898 1.689230161507729E-4 32-33 6.93017502157017E-5 6.886861427685357E-4 0.0 0.003945868402906515 1.9057981309317967E-4 34-35 7.363310960418305E-5 7.753133305381627E-4 0.0 0.006726601130311547 2.2089932881254917E-4 36-37 7.796446899266441E-5 8.619405183077899E-4 0.0 0.011257203050663045 2.2523068820103052E-4 38-39 7.796446899266441E-5 8.662718776962712E-4 0.0 0.01823935438489499 2.4255612575495595E-4 40-41 7.796446899266441E-5 9.269109091350102E-4 0.0 0.025407754172831636 2.468874851434373E-4 42-43 7.796446899266441E-5 9.615617842428611E-4 0.0 0.03231194103807092 2.7287564147432543E-4 44-45 7.796446899266441E-5 0.0011088280034512272 0.0 0.04041158309453105 2.9886379780521356E-4 46-47 7.796446899266441E-5 0.0012127806287747797 0.0 0.04940781654440683 3.118578759706577E-4 48-49 7.796446899266441E-5 0.0012127806287747797 0.0 0.058369399119174756 3.205205947476204E-4 50-51 7.796446899266441E-5 0.0013470527698177018 0.0 0.06728333674066939 3.205205947476204E-4 52-53 8.229582838114577E-5 0.001360046847983146 0.0 0.07602835134601324 3.3351467291306444E-4 54-55 8.662718776962713E-5 0.00137304092614859 0.0 0.08484266770157281 3.465087510785085E-4 56-57 8.662718776962713E-5 0.0013773722855370712 0.0 0.091998073411344 3.465087510785085E-4 58-59 8.662718776962713E-5 0.0013946977230909967 0.0 0.09795802392989435 3.508401104669899E-4 60-61 1.0395262532355255E-4 0.0014206858794218848 0.0 0.10351948938470441 3.7682826679787796E-4 62-63 1.0395262532355255E-4 0.0014510053951412544 0.0 0.10882540463559408 4.158105012942102E-4 64-65 1.0395262532355255E-4 0.0015852775361841764 0.0 0.11429158018385754 4.2014186068269153E-4 66-67 1.1261534410051526E-4 0.0015896088955726579 0.0 0.11994400418582571 4.244732200711729E-4 68-69 1.1261534410051526E-4 0.001654579286399878 0.0 0.12547948148430488 4.244732200711729E-4 70-71 1.1261534410051526E-4 0.001689230161507729 0.0 0.130672781391094 4.331359388481356E-4 72-73 1.386035004314034E-4 0.0016978928802846916 0.0 0.1347875728101513 4.591240951790237E-4 74-75 1.386035004314034E-4 0.0017671946305003934 0.0 0.13819635264888613 4.6778681395598647E-4 76-77 1.386035004314034E-4 0.0018408277401045763 0.0 0.14148385442474348 4.6778681395598647E-4 78-79 1.386035004314034E-4 0.0018884726933778712 0.0 0.1442732498709255 4.6778681395598647E-4 80-81 1.386035004314034E-4 0.0018884726933778712 0.0 0.14542972282765002 4.894436108983933E-4 82-83 1.386035004314034E-4 0.0018928040527663526 0.0 0.14584120196955574 5.284258453947255E-4 84-85 1.386035004314034E-4 0.0019014667715433154 0.0 0.146248349752073 5.284258453947255E-4 86-87 1.386035004314034E-4 0.001957774443593573 0.0 0.14635663373678504 5.284258453947255E-4 88-89 1.386035004314034E-4 0.002113703381578902 0.0 0.1463826218931159 5.327572047832068E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15700 0.0 51.61278 1 GTATCAA 29780 0.0 39.776623 1 TCAACGC 36400 0.0 32.185955 4 ATCAACG 36610 0.0 31.906794 3 TATCAAC 37755 0.0 31.21417 2 CAACGCA 37530 0.0 31.17075 5 AACGCAG 38480 0.0 30.470146 6 ACGCAGA 44055 0.0 26.624075 7 CGCAGAG 44865 0.0 26.142265 8 TGGTATC 7360 0.0 24.511923 2 GTGGTAT 7825 0.0 23.93992 1 GCAGAGT 52055 0.0 22.53972 9 GAGTACT 31890 0.0 20.54483 12-13 CAGAGTA 50860 0.0 19.33351 10-11 AGAGTAC 47060 0.0 19.208933 10-11 GTACATG 34120 0.0 19.095678 1 TACATGG 34020 0.0 18.630413 2 GTACTTT 35295 0.0 18.489525 14-15 AGTACTT 34215 0.0 18.049484 12-13 ACATGGG 33995 0.0 18.020521 3 >>END_MODULE