##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139684_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10871120 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.835073571076393 33.0 31.0 33.0 25.0 34.0 2 31.854875118663028 33.0 32.0 33.0 28.0 34.0 3 31.63485206676037 33.0 31.0 33.0 28.0 34.0 4 32.23851903023792 33.0 33.0 34.0 30.0 34.0 5 32.268154799137534 33.0 33.0 34.0 31.0 34.0 6 35.6061529998749 38.0 36.0 38.0 29.0 38.0 7 36.28701927676265 38.0 37.0 38.0 33.0 38.0 8 36.438084484395354 38.0 37.0 38.0 34.0 38.0 9 36.63193295630993 38.0 38.0 38.0 34.0 38.0 10-11 36.69972762696024 38.0 38.0 38.0 34.0 38.0 12-13 36.74466145162596 38.0 38.0 38.0 34.0 38.0 14-15 36.78789549742805 38.0 38.0 38.0 35.0 38.0 16-17 36.7747240394734 38.0 38.0 38.0 35.0 38.0 18-19 36.7769348972323 38.0 38.0 38.0 35.0 38.0 20-21 36.79974097618758 38.0 38.0 38.0 35.0 38.0 22-23 36.77405644093349 38.0 38.0 38.0 35.0 38.0 24-25 36.783248631462016 38.0 38.0 38.0 35.0 38.0 26-27 36.745915710683505 38.0 38.0 38.0 34.5 38.0 28-29 36.67101888898149 38.0 38.0 38.0 34.0 38.0 30-31 36.69260924589982 38.0 38.0 38.0 34.0 38.0 32-33 36.689014771092246 38.0 38.0 38.0 34.0 38.0 34-35 36.679072987675184 38.0 38.0 38.0 34.0 38.0 36-37 36.65268746014958 38.0 38.0 38.0 34.0 38.0 38-39 36.64512147292483 38.0 38.0 38.0 34.0 38.0 40-41 36.63088816258815 38.0 38.0 38.0 34.0 38.0 42-43 36.59940305618403 38.0 38.0 38.0 34.0 38.0 44-45 36.540221318329486 38.0 38.0 38.0 34.0 38.0 46-47 36.425485661190855 38.0 38.0 38.0 34.0 38.0 48-49 36.380348211951556 38.0 38.0 38.0 34.0 38.0 50-51 36.394672386394134 38.0 38.0 38.0 34.0 38.0 52-53 36.39891315647799 38.0 38.0 38.0 34.0 38.0 54-55 36.32639941057212 38.0 38.0 38.0 33.0 38.0 56-57 36.346552685330444 38.0 38.0 38.0 34.0 38.0 58-59 36.29376894258211 38.0 38.0 38.0 33.5 38.0 60-61 36.307134917597836 38.0 38.0 38.0 33.0 38.0 62-63 36.32418513565502 38.0 38.0 38.0 33.0 38.0 64-65 36.31225432272604 38.0 38.0 38.0 33.0 38.0 66-67 36.29473372036784 38.0 38.0 38.0 33.0 38.0 68-69 36.2769993431338 38.0 37.5 38.0 33.0 38.0 70-71 36.27989677300985 38.0 37.0 38.0 33.0 38.0 72-73 36.27255334249548 38.0 37.0 38.0 33.0 38.0 74-75 36.23523057006804 38.0 37.0 38.0 33.0 38.0 76-77 36.22432664617486 38.0 37.0 38.0 33.0 38.0 78-79 36.21100025937621 38.0 37.0 38.0 33.0 38.0 80-81 36.21792676625604 38.0 37.0 38.0 33.0 38.0 82-83 36.18436603271431 38.0 37.0 38.0 33.0 38.0 84-85 36.152620346328476 38.0 37.0 38.0 33.0 38.0 86-87 36.15217410731617 38.0 37.0 38.0 33.0 38.0 88-89 36.15847222734029 38.0 37.0 38.0 33.0 38.0 90-91 36.10342210166985 38.0 37.0 38.0 33.0 38.0 92-93 36.119639911932836 38.0 37.0 38.0 33.0 38.0 94-95 36.072871605899316 38.0 37.0 38.0 33.0 38.0 96-97 36.10133362108049 38.0 37.0 38.0 33.0 38.0 98-99 36.14759845982491 38.0 37.0 38.0 33.0 38.0 100-101 35.60155668931084 38.0 36.0 38.0 30.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 6.0 18 23.0 19 42.0 20 104.0 21 558.0 22 2525.0 23 7242.0 24 16356.0 25 31052.0 26 51179.0 27 76938.0 28 110353.0 29 147512.0 30 189162.0 31 239955.0 32 304177.0 33 395637.0 34 540587.0 35 831954.0 36 1671266.0 37 6254492.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.866665072228066 20.937244736512888 14.122767479339753 25.07332271191929 2 13.972433383128877 21.037804752408213 43.064458859804695 21.925303004658215 3 17.946117787311703 26.39736292120775 29.833788974825044 25.822730316655505 4 12.297527761628976 18.702681968371245 39.573650185077526 29.426140084922253 5 13.479604030677505 37.20555720774417 35.65481941578427 13.660019345794058 6 29.12290545960306 38.6866394630912 19.013385925277248 13.177069152028494 7 25.941269521202965 33.04562226835624 23.310364037640845 17.702744172799946 8 23.544280626099244 37.567794302702936 21.253237936845515 17.634687134352305 9 24.905336340689825 17.521368543443547 21.795077232152714 35.778217883713914 10-11 23.645903090022003 27.39979873278926 28.996915681180962 19.95738249600777 12-13 24.661633268847485 24.753247572765968 29.282528321141548 21.302590837245 14-15 21.74779139591873 26.16987026175776 27.178253022687638 24.90408531963588 16-17 21.157295660428733 29.303944763740997 27.827841105608254 21.71091847022202 18-19 21.051823547159813 28.348909771946225 29.887463297249962 20.711803383644003 20-21 21.869892452396016 27.474738545306508 29.845562823660554 20.809806178636915 22-23 21.558735646353377 27.3969646901673 29.67389784417013 21.370401819309183 24-25 21.320137567023075 27.463946252824094 29.869579620486775 21.346336559666053 26-27 21.339645759309267 27.644893922744007 29.701916949856678 21.31354336809005 28-29 21.208719715194192 27.771461402842224 29.738790227112393 21.281028654851188 30-31 21.60686452255695 27.53875846750433 29.641205565371337 21.213171444567376 32-33 21.371875902338864 27.679637418750552 29.607682970374317 21.340803708536267 34-35 21.466515284833854 27.737603198215037 29.615268899979096 21.180612616972013 36-37 21.43308725785197 27.640719175888595 29.597165799055237 21.329027767204202 38-39 21.24936508597749 27.787718563139364 29.70154417441749 21.261372176465652 40-41 21.575353762690735 27.618582595972363 29.520201846955658 21.28586179438124 42-43 21.43838165927417 27.703504498385605 29.356233517724874 21.501880324615353 44-45 21.547119264217756 27.83701594912279 29.19456851307884 21.421296273580616 46-47 21.605310915745214 27.81971946302727 28.92057218279829 21.654397438429232 48-49 21.542042174961683 27.917587827598116 28.9369469733519 21.6034230240883 50-51 21.533771904272424 28.06577284637644 28.75201641366707 21.64843883568406 52-53 21.663311530110494 28.01045665371144 28.692477558558473 21.633754257619593 54-55 21.64545720332304 27.972084887257964 28.685051581067434 21.69740632835156 56-57 21.639984743250686 28.04606236448366 28.65335226932665 21.660600622939004 58-59 21.608797601960408 28.137049206525393 28.677764385787146 21.576388805727053 60-61 21.71422363858064 28.10022122584404 28.663720538827263 21.521834596748054 62-63 21.631903016961154 28.088438471345288 28.673790921721583 21.605867589971975 64-65 21.6019585113719 28.062310146631347 28.659128096143117 21.67660324585363 66-67 21.7045328971857 28.132218121452212 28.462574403772784 21.7006745775893 68-69 21.63354220747296 28.073660836012383 28.57940841525458 21.713388541260077 70-71 21.65739787647371 27.81747758470361 28.67219895295985 21.852925585862838 72-73 21.73445077634657 27.862533987694672 28.649136062986617 21.75387917297214 74-75 21.64256333642219 27.999287245573644 28.55163427673255 21.806515141271618 76-77 21.660300802738597 27.9930254491126 28.498378694737347 21.848295053411455 78-79 21.67497448939492 28.02943330390529 28.474802927118404 21.82078927958139 80-81 21.64918862103322 28.014709155973964 28.469638860798103 21.866463362194715 82-83 21.746306238675185 28.00042003757996 28.550306202927306 21.702967520817555 84-85 21.87831305213777 28.007084909930093 28.412859176927828 21.701742861004313 86-87 21.659963495204654 28.038232981197442 28.524709329215135 21.77709419438277 88-89 21.76827067127886 28.068047096046268 28.43196492165437 21.731717311020507 90-91 21.81334144830934 28.045539568412224 28.489046409727557 21.652072573550882 92-93 21.843993383923404 28.0187553432457 28.432495159864036 21.704756112966862 94-95 21.679734264904972 28.164745016961955 28.407977851606287 21.747542866526793 96-97 21.69252597438975 28.163902802531698 28.458621106098047 21.684950116980506 98-99 21.94016256700734 28.748508983567866 28.486602502401382 20.824725947023413 100-101 22.527399022382298 31.24866747357825 25.908637119429244 20.315296384610203 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2671.0 1 2642.0 2 3481.0 3 4642.5 4 6069.0 5 8904.0 6 11345.5 7 13929.0 8 16885.5 9 18091.5 10 17180.5 11 15852.0 12 16764.5 13 20952.0 14 29919.5 15 40837.0 16 49026.5 17 53756.5 18 54115.5 19 50758.5 20 46275.5 21 42270.5 22 41892.0 23 47680.0 24 59183.5 25 75906.5 26 97557.0 27 121267.5 28 145636.0 29 170292.5 30 193049.0 31 218644.0 32 246928.0 33 274406.0 34 301861.0 35 327994.0 36 355060.5 37 380186.0 38 398529.5 39 411751.5 40 424061.0 41 437103.5 42 444624.0 43 449351.0 44 457137.5 45 460363.0 46 457135.5 47 453830.5 48 447910.5 49 435804.5 50 421307.5 51 404075.0 52 380388.0 53 354085.0 54 325951.0 55 296166.0 56 267897.0 57 237804.0 58 208645.0 59 180660.0 60 150421.5 61 120761.0 62 93326.0 63 70715.0 64 53323.5 65 39074.0 66 28173.0 67 20771.5 68 15273.5 69 10947.5 70 7886.5 71 5665.0 72 4061.5 73 2815.0 74 1788.0 75 1081.0 76 698.0 77 448.0 78 288.5 79 186.5 80 126.5 81 85.5 82 60.5 83 38.5 84 26.5 85 19.0 86 15.5 87 16.0 88 16.5 89 13.5 90 8.5 91 3.5 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.06202672769687024 6 0.0 7 0.0034587052667986373 8 0.0 9 0.0 10-11 0.0 12-13 9.198684220209142E-6 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 6.441622451446846E-5 28-29 2.7618149985334765E-5 30-31 3.225254145419153E-5 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 1.4291027825965007E-5 46-47 0.0 48-49 0.0 50-51 0.0 52-53 9.247322088655258E-4 54-55 1.535634979367258E-4 56-57 0.003144696312434264 58-59 0.007687755568817941 60-61 0.003159472417805792 62-63 0.005846640573477758 64-65 0.006607525451333129 66-67 0.004948582257146508 68-69 0.003682581390025181 70-71 0.005117102079367205 72-73 0.0030557592876550473 74-75 0.002834371688639053 76-77 0.0024200025035631284 78-79 6.572423589414125E-5 80-81 0.0 82-83 0.0 84-85 0.0 86-87 7.399999817846159E-5 88-89 0.0 90-91 2.4991149936380087E-4 92-93 0.0 94-95 1.1882681336549738E-4 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 148.0 20-21 618.0 22-23 1331.0 24-25 1595.0 26-27 3473.0 28-29 7451.0 30-31 19527.0 32-33 25327.0 34-35 34665.0 36-37 54280.0 38-39 66192.0 40-41 65150.0 42-43 73843.0 44-45 88737.0 46-47 88527.0 48-49 82440.0 50-51 75172.0 52-53 70636.0 54-55 75538.0 56-57 78722.0 58-59 78791.0 60-61 76968.0 62-63 74374.0 64-65 78095.0 66-67 83151.0 68-69 85962.0 70-71 85052.0 72-73 78995.0 74-75 80704.0 76-77 84784.0 78-79 87602.0 80-81 90103.0 82-83 84838.0 84-85 82896.0 86-87 87458.0 88-89 91487.0 90-91 94113.0 92-93 92446.0 94-95 100483.0 96-97 160255.0 98-99 896604.0 100-101 7282587.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.45061598539401 #Duplication Level Percentage of deduplicated Percentage of total 1 88.64975414136637 73.97876590050757 2 7.750779617083873 12.936146668253713 3 1.9625588401197787 4.913302323467278 4 0.755336048142093 2.5213303397372355 5 0.34837586341919236 1.453609019838755 6 0.1825302148736475 0.9139355320291328 7 0.10783028119261488 0.629895237118137 8 0.0663623382628962 0.4430382405015816 9 0.04173319866935655 0.31343950223987666 >10 0.1319376422310667 1.6214766781741454 >50 0.00210222806441705 0.11347992165298838 >100 5.896570560803387E-4 0.08455415873734305 >500 7.328896872864435E-5 0.038545619553427876 >1k 3.664054993635107E-5 0.038480858188795146 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.839736844041828E-5 0.0 1.839736844041828E-5 0.0 3 0.0 1.839736844041828E-5 0.0 1.839736844041828E-5 0.0 4 0.0 5.5192105321254847E-5 0.0 2.7596052660627423E-5 0.0 5 0.0 5.5192105321254847E-5 0.0 3.679473688083656E-5 0.0 6 0.0 7.358947376167312E-5 0.0 3.679473688083656E-5 0.0 7 0.0 7.358947376167312E-5 0.0 3.679473688083656E-5 0.0 8 9.19868422020914E-6 9.198684220209142E-5 0.0 3.679473688083656E-5 0.0 9 9.19868422020914E-6 1.2878157908292797E-4 0.0 6.439078954146399E-5 0.0 10-11 9.19868422020914E-6 1.2878157908292797E-4 0.0 8.278815798188228E-5 0.0 12-13 1.839736844041828E-5 1.2878157908292797E-4 0.0 1.0578486853240512E-4 0.0 14-15 3.679473688083657E-5 2.3916578972543766E-4 0.0 1.4717894752334628E-4 0.0 16-17 5.059276321115028E-5 2.3916578972543766E-4 0.0 1.6557631596376455E-4 0.0 18-19 5.9791447431359416E-5 2.667618423860651E-4 0.0 1.747750001839737E-4 0.0 20-21 6.439078954146399E-5 2.943578950466925E-4 0.0 1.9777171073449655E-4 0.0 22-23 6.439078954146399E-5 3.633480266982611E-4 0.0 2.3916578972543766E-4 0.0 24-25 7.358947376167312E-5 4.4153684257003877E-4 0.0 2.9435789504669255E-4 0.0 26-27 7.358947376167312E-5 4.691328952306662E-4 0.0 4.369375004599342E-4 0.0 28-29 7.358947376167312E-5 4.7833157945087533E-4 0.0 7.910868429379862E-4 0.0 30-31 9.198684220209142E-5 5.151263163317119E-4 0.0 0.0017063559228487958 0.0 32-33 9.198684220209142E-5 5.243250005519211E-4 0.0 0.003858848030377735 0.0 34-35 1.0118552642230055E-4 6.163118427540124E-4 0.0 0.006968003296808425 0.0 36-37 1.1038421064250969E-4 7.17497369176313E-4 0.0 0.01168232895966561 0.0 38-39 1.1038421064250969E-4 7.634907902773588E-4 0.0 0.01862733554592351 0.0 40-41 1.1038421064250969E-4 8.46278948259241E-4 0.0 0.026027677001081766 0.0 42-43 1.1038421064250969E-4 8.876730272501821E-4 0.0 0.0331152631927529 0.0 44-45 1.1958289486271883E-4 9.750605273421689E-4 0.0 0.04138947964883103 0.0 46-47 1.2878157908292797E-4 0.0010394513168836329 0.0 0.05028460728977327 0.0 48-49 1.379802633031371E-4 0.0010486500011038422 0.0 0.05905095335163259 0.0 50-51 1.379802633031371E-4 0.0010992427643149922 0.0 0.0680288691505567 0.0 52-53 1.6557631596376455E-4 0.0011038421064250969 0.0 0.07695619218626967 0.0 54-55 1.6557631596376455E-4 0.0011176401327554107 0.0 0.08580532640611087 0.0 56-57 1.6557631596376455E-4 0.0011682328959665609 0.0 0.09222600799181685 0.0 58-59 1.747750001839737E-4 0.0011728322380766655 0.0 0.09777281457660297 0.0 60-61 1.8397368440418283E-4 0.0011820309222968747 0.0 0.10320463760863646 0.0 62-63 1.8397368440418283E-4 0.0012234250012878158 0.0 0.10841569221938493 0.0 64-65 1.8397368440418283E-4 0.0014165973699122078 0.0 0.11348416722472018 0.0 66-67 1.8397368440418283E-4 0.0014211967120223122 0.0 0.118534244861615 0.0 68-69 1.8397368440418283E-4 0.001434994738352626 0.0 0.12413624355172237 0.0 70-71 1.8397368440418283E-4 0.0014487927646829398 0.0 0.12904374158320392 0.0 72-73 1.8397368440418283E-4 0.001457991448903149 0.0 0.13299457645578378 0.0 74-75 1.8397368440418283E-4 0.0014947861857839855 0.0 0.13634749685405 0.0 76-77 1.8397368440418283E-4 0.0015591769753254495 0.0 0.13921288698864515 0.0 78-79 1.8397368440418283E-4 0.0015913723700961815 0.0 0.1417747205439734 0.0 80-81 1.8397368440418283E-4 0.0015913723700961815 0.0 0.14301194357159153 0.0 82-83 1.9317236862439197E-4 0.0016005710543163906 0.0 0.14343968238783122 0.0 84-85 1.9317236862439197E-4 0.001637365791197227 0.0 0.14380762975663963 0.0 86-87 1.9317236862439197E-4 0.0016833592122982729 0.0 0.14399160344104378 0.0 88-89 1.9317236862439197E-4 0.0017707467123902598 0.0 0.14403299752003473 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14955 0.0 48.948883 1 GTATCAA 27900 0.0 38.90678 1 TCAACGC 33110 0.0 32.47103 4 ATCAACG 33155 0.0 32.322563 3 CAACGCA 33820 0.0 31.738178 5 TATCAAC 34800 0.0 30.99359 2 AACGCAG 35145 0.0 30.621355 6 ACGCAGA 39935 0.0 26.87269 7 CGCAGAG 40420 0.0 26.538204 8 GTGGTAT 7500 0.0 24.34333 1 TGGTATC 7185 0.0 24.146067 2 GCAGAGT 47395 0.0 22.623524 9 GAGTACT 30255 0.0 20.435251 12-13 CAGAGTA 45935 0.0 19.398823 10-11 AGAGTAC 43380 0.0 18.931753 10-11 GTACATG 30485 0.0 18.832743 1 TACATGG 29610 0.0 18.644085 2 GTACTTT 33690 0.0 18.287989 14-15 ACATGGG 30295 0.0 17.59416 3 AGTACTT 32755 0.0 17.390581 12-13 >>END_MODULE