##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139683_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8943899 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.553196542134476 30.0 18.0 32.0 18.0 33.0 2 27.989679221556504 30.0 25.0 32.0 18.0 33.0 3 27.609430629751074 29.0 25.0 31.0 18.0 33.0 4 30.80323100696911 32.0 30.0 33.0 27.0 33.0 5 31.27185045358853 33.0 32.0 33.0 28.0 33.0 6 35.13925693928341 37.0 35.0 38.0 29.0 38.0 7 35.66733255820532 38.0 36.0 38.0 31.0 38.0 8 36.119836326416475 38.0 37.0 38.0 33.0 38.0 9 36.59334827014482 38.0 37.0 38.0 34.0 38.0 10-11 36.690760707382765 38.0 38.0 38.0 34.0 38.0 12-13 36.786595476983805 38.0 38.0 38.0 34.5 38.0 14-15 36.79180142799019 38.0 38.0 38.0 34.5 38.0 16-17 36.810128949354194 38.0 38.0 38.0 35.0 38.0 18-19 36.823700547155106 38.0 38.0 38.0 35.0 38.0 20-21 36.86312529696423 38.0 38.0 38.0 35.0 38.0 22-23 36.85152403929658 38.0 38.0 38.0 35.0 38.0 24-25 36.859272067714066 38.0 38.0 38.0 35.0 38.0 26-27 36.819103090149014 38.0 38.0 38.0 35.0 38.0 28-29 36.73673743088666 38.0 38.0 38.0 34.5 38.0 30-31 36.77129786415598 38.0 38.0 38.0 35.0 38.0 32-33 36.77254447329909 38.0 38.0 38.0 35.0 38.0 34-35 36.76050458262273 38.0 38.0 38.0 35.0 38.0 36-37 36.732532538986035 38.0 38.0 38.0 35.0 38.0 38-39 36.72219095980523 38.0 38.0 38.0 34.0 38.0 40-41 36.72171905436251 38.0 38.0 38.0 34.5 38.0 42-43 36.68822976969146 38.0 38.0 38.0 34.0 38.0 44-45 36.632262757512976 38.0 38.0 38.0 34.0 38.0 46-47 36.5172100611954 38.0 38.0 38.0 34.0 38.0 48-49 36.46953822056604 38.0 38.0 38.0 34.0 38.0 50-51 36.48157430185766 38.0 38.0 38.0 34.0 38.0 52-53 36.49164967499952 38.0 38.0 38.0 34.0 38.0 54-55 36.417200096667656 38.0 38.0 38.0 34.0 38.0 56-57 36.43233029564469 38.0 38.0 38.0 34.0 38.0 58-59 36.374882096598256 38.0 38.0 38.0 34.0 38.0 60-61 36.391140346199634 38.0 38.0 38.0 34.0 38.0 62-63 36.40958776016794 38.0 38.0 38.0 34.0 38.0 64-65 36.400699054957286 38.0 38.0 38.0 34.0 38.0 66-67 36.38285200779176 38.0 38.0 38.0 34.0 38.0 68-69 36.36325353007847 38.0 38.0 38.0 34.0 38.0 70-71 36.362502465799025 38.0 38.0 38.0 34.0 38.0 72-73 36.356075070309444 38.0 38.0 38.0 34.0 38.0 74-75 36.32168898040541 38.0 38.0 38.0 33.5 38.0 76-77 36.31327471155525 38.0 37.5 38.0 33.0 38.0 78-79 36.297926588695674 38.0 37.0 38.0 33.0 38.0 80-81 36.301067985446906 38.0 37.0 38.0 33.0 38.0 82-83 36.272151485621734 38.0 37.0 38.0 33.0 38.0 84-85 36.24233726569148 38.0 37.0 38.0 33.0 38.0 86-87 36.24427513134469 38.0 37.0 38.0 33.0 38.0 88-89 36.2491448971524 38.0 37.0 38.0 33.0 38.0 90-91 36.19314744219441 38.0 37.0 38.0 33.0 38.0 92-93 36.21316649255621 38.0 37.0 38.0 33.0 38.0 94-95 36.16900411534408 38.0 37.0 38.0 33.0 38.0 96-97 36.194729873213554 38.0 37.0 38.0 33.0 38.0 98-99 36.23805332070704 38.0 37.0 38.0 33.0 38.0 100-101 35.706466136345355 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 8.0 19 27.0 20 119.0 21 460.0 22 1831.0 23 5595.0 24 12727.0 25 24391.0 26 40390.0 27 62068.0 28 87770.0 29 117952.0 30 151464.0 31 193691.0 32 248102.0 33 329520.0 34 466699.0 35 766474.0 36 1802180.0 37 4632431.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.22475052546993 19.11962556822254 13.214605844721635 21.441018061585893 2 14.92015954115761 20.78754467151295 40.314576450382546 23.977719336946894 3 20.20733910344918 25.954295771899925 28.959238023595752 24.879127101055143 4 13.285883483254898 18.270588699626416 38.65866553278386 29.784862284334828 5 14.095221646504102 38.1075964850483 34.26299361962238 13.534188248825219 6 30.06859759932441 37.602224712063496 18.638873269924 13.69030441868809 7 26.790175524592495 32.91027967830778 22.597885618754823 17.7016591783449 8 24.129800660763276 37.236858332143505 20.738226136050955 17.89511487104226 9 25.345199001017342 17.8226297054562 21.392225024007985 35.43994626951847 10-11 24.30434422392292 27.09838852160562 28.230568122470974 20.366699132000484 12-13 25.095236713609843 24.47483611313344 28.743550701072916 21.686376472183802 14-15 22.28131153985527 25.867242016037974 26.438296094354374 25.413150349752385 16-17 21.717854819246057 29.10300082771507 27.18533046940713 21.993813883631734 18-19 21.72534595929583 28.0593396683035 29.041210103110508 21.17410426929016 20-21 22.467283690244884 27.15941341110838 29.101894425068703 21.271408473578035 22-23 22.254650605923075 27.09199414936125 28.945583491188987 21.707771753526693 24-25 22.01039819683776 27.242708760133617 29.03060683619994 21.716286206828688 26-27 21.915517738774135 27.381436417981025 28.999597435104096 21.703448408140748 28-29 21.81688321945415 27.340221049186002 29.068953527942593 21.77394220341725 30-31 22.14259322830523 27.229057848558497 28.974168334720446 21.654180588415826 32-33 21.91405230782252 27.38060959932424 28.96850942520025 21.736828667652986 34-35 22.073214210407002 27.380500136146747 28.934252044489465 21.61203360895679 36-37 22.06000683585117 27.278030509068202 28.872613857182515 21.789348797898118 38-39 21.818262715124774 27.407952115012797 29.009728546093466 21.764056623768965 40-41 22.065773495703073 27.264427771813804 28.901386769228726 21.7684119632544 42-43 22.00958485315974 27.294242670821646 28.772345334222056 21.923827141796558 44-45 21.981640285257527 27.448376387402245 28.638412071264934 21.931571256075294 46-47 22.15851910479574 27.42221548354123 28.342180161664448 22.077085249998586 48-49 22.048947802449884 27.514541869723836 28.35013896981668 22.086371358009597 50-51 22.047379462009875 27.701879866724475 28.250253973244 22.00048669802165 52-53 22.15357038462411 27.65828235229682 28.17027491855238 22.017872344526694 54-55 22.15316472642879 27.563620012787872 28.153554610628696 22.12966065015464 56-57 22.09922393523312 27.692479504754868 28.13697730453024 22.071319255481768 58-59 22.03351903675502 27.72897191295699 28.21499931908281 22.02250973120518 60-61 22.095621137240776 27.717932996288987 28.198871585383184 21.987574281087053 62-63 22.03343897745775 27.829711007208374 28.149793597308204 21.987056418025674 64-65 22.004203951334546 27.789812412834763 28.11263298755165 22.09335064827904 66-67 22.054907962244684 27.827210097173012 28.002658724811013 22.115223215771294 68-69 22.01148730417866 27.776233331559038 28.072085692764816 22.14019367149748 70-71 22.030800395480803 27.55953935599173 28.132667824758485 22.276992423768984 72-73 22.121973688717105 27.578903299680924 28.025426804658654 22.273696206943317 74-75 22.045115347432407 27.676344772243322 27.98783654848636 22.290703331837914 76-77 22.21065369367121 27.591761965356596 27.92490757186441 22.272676769107782 78-79 22.166178728139858 27.60907168940995 27.877274184476324 22.347475397973856 80-81 22.16708507818945 27.673328489454335 27.85319990609211 22.306386526264102 82-83 22.210628888056306 27.668818794967937 27.90074788216299 22.21980443481277 84-85 22.291901496688425 27.68885767152018 27.84626170363192 22.172979128159483 86-87 22.187100366084678 27.67694895467343 27.90644855480286 22.22950212443903 88-89 22.216740618043385 27.68442961171069 27.862962755885107 22.235867014360817 90-91 22.26845826949645 27.728265266831407 27.805451710611894 22.197824753060242 92-93 22.299325428805435 27.701966905573023 27.839706501973577 22.15900116364796 94-95 22.235834886662307 27.800601537769783 27.828102420443802 22.135461155124116 96-97 22.267825283497736 27.778020533192965 27.84668264005067 22.10747154325863 98-99 22.477061905644042 28.284124582558757 27.964876189432726 21.27393732236447 100-101 23.046020300866548 30.797832958590714 25.33450821077661 20.821638529766123 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1533.0 1 1448.5 2 1976.5 3 2871.5 4 3568.0 5 5077.0 6 6794.5 7 8718.5 8 11543.0 9 13439.0 10 13009.0 11 11951.5 12 12409.0 13 14921.0 14 20223.5 15 26502.0 16 31951.5 17 36358.0 18 37809.5 19 35704.0 20 32422.5 21 29646.5 22 28701.0 23 31469.0 24 38572.0 25 49560.5 26 63813.0 27 81056.5 28 100595.5 29 121459.0 30 141830.0 31 162789.5 32 184503.5 33 205359.0 34 225249.5 35 243569.5 36 264227.0 37 283522.0 38 297159.5 39 308836.5 40 320494.5 41 331746.0 42 340000.0 43 347305.0 44 355117.5 45 362033.5 46 365399.0 47 365252.5 48 363065.0 49 356331.5 50 346798.0 51 337085.5 52 324393.5 53 307961.0 54 289605.5 55 269535.5 56 247548.0 57 223992.5 58 200223.0 59 173546.0 60 144331.5 61 117148.5 62 92313.0 63 70464.0 64 52747.0 65 38820.5 66 28453.0 67 21434.0 68 16185.0 69 11932.0 70 8584.0 71 6039.5 72 4074.5 73 2611.5 74 1677.0 75 1027.5 76 609.5 77 333.0 78 182.5 79 115.5 80 86.5 81 68.0 82 53.5 83 38.0 84 25.0 85 16.5 86 10.5 87 7.0 88 5.0 89 4.0 90 2.5 91 1.5 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.04635562186022002 6 0.0 7 0.0021802571786644727 8 0.0 9 0.0 10-11 0.0 12-13 5.5904030222165965E-6 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 4.473562614974054E-5 28-29 1.1186924901166315E-5 30-31 5.597339069784937E-6 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 5.735940693126485E-6 46-47 0.0 48-49 0.0 50-51 0.0 52-53 5.935395046671892E-4 54-55 1.830716157263006E-4 56-57 0.0029744316431080994 58-59 0.007551908776285121 60-61 0.0031722699387830003 62-63 0.0056531405856254605 64-65 0.006468041607214026 66-67 0.004871803545349321 68-69 0.0036987123973244544 70-71 0.0052034240023741555 72-73 0.0032931615712257214 74-75 0.002887551600768253 76-77 0.0024704197478732904 78-79 1.0271028036183292E-4 80-81 0.0 82-83 0.0 84-85 0.0 86-87 5.31433317507692E-5 88-89 6.703959002877272E-6 90-91 1.6923853962304077E-4 92-93 0.0 94-95 1.312524704823556E-4 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 87.0 20-21 354.0 22-23 778.0 24-25 919.0 26-27 1875.0 28-29 4259.0 30-31 11730.0 32-33 15203.0 34-35 21160.0 36-37 33490.0 38-39 38319.0 40-41 39570.0 42-43 45718.0 44-45 56136.0 46-47 56748.0 48-49 52116.0 50-51 47097.0 52-53 40946.0 54-55 44171.0 56-57 44930.0 58-59 52537.0 60-61 53366.0 62-63 51507.0 64-65 56831.0 66-67 61286.0 68-69 62281.0 70-71 65004.0 72-73 57510.0 74-75 59522.0 76-77 63185.0 78-79 66087.0 80-81 66809.0 82-83 64373.0 84-85 64538.0 86-87 67498.0 88-89 71675.0 90-91 74046.0 92-93 72711.0 94-95 81052.0 96-97 134377.0 98-99 780356.0 100-101 6261742.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.96498075029348 #Duplication Level Percentage of deduplicated Percentage of total 1 89.89793076234463 76.38175956713826 2 6.979559342511007 11.860362503639573 3 1.7158535364465453 4.373623880835111 4 0.6368903235675355 2.164534963278553 5 0.2892746940393836 1.228910940530163 6 0.15010999494725796 0.7652455698672255 7 0.09298773720609865 0.5530490911210664 8 0.058278960362775564 0.3961336596296274 9 0.04333646303555797 0.3313873572841789 >10 0.13280131213230878 1.715202881299225 >50 0.0023431215143195883 0.1295665810253241 >100 5.899158151921024E-4 0.07649779156744593 >500 4.383607742238775E-5 0.023725212784299215 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 3.354241813329958E-5 0.0 0.0 0.0 4 0.0 7.826564231103236E-5 0.0 4.472322417773278E-5 0.0 5 0.0 8.944644835546556E-5 0.0 4.472322417773278E-5 0.0 6 6.708483626659917E-5 8.944644835546556E-5 0.0 4.472322417773278E-5 1.1180806044433195E-5 7 6.708483626659917E-5 8.944644835546556E-5 0.0 4.472322417773278E-5 1.1180806044433195E-5 8 6.708483626659917E-5 8.944644835546556E-5 0.0 4.472322417773278E-5 1.1180806044433195E-5 9 6.708483626659917E-5 1.4535047857763153E-4 0.0 8.944644835546556E-5 1.1180806044433195E-5 10-11 6.708483626659917E-5 1.4535047857763153E-4 0.0 1.3976007555541493E-4 1.1180806044433195E-5 12-13 6.708483626659917E-5 1.4535047857763153E-4 0.0 1.6771209066649792E-4 1.1180806044433195E-5 14-15 6.708483626659917E-5 2.2361612088866387E-4 0.0 2.4038732995531367E-4 1.677120906664979E-5 16-17 8.385604533324896E-5 2.4597773297753027E-4 0.0 2.8511055413304645E-4 2.236161208886639E-5 18-19 1.0062725439989874E-4 2.6833934506639666E-4 0.0 3.2424337528856264E-4 2.236161208886639E-5 20-21 1.0062725439989874E-4 2.9070095715526305E-4 0.0 3.6896659946629543E-4 2.236161208886639E-5 22-23 1.0062725439989874E-4 2.9629136017747965E-4 0.0 4.0809942062181156E-4 4.472322417773277E-5 24-25 1.0062725439989874E-4 3.7455700248851197E-4 0.0 4.3046103271067795E-4 5.590403022216597E-5 26-27 1.0062725439989874E-4 4.0250901759959496E-4 0.0 4.8077465991062734E-4 5.590403022216597E-5 28-29 1.0062725439989874E-4 4.0809942062181156E-4 0.0 7.099811838215079E-4 5.590403022216597E-5 30-31 1.1180806044433194E-4 4.5282264479954435E-4 0.0 0.00161003607039838 5.590403022216597E-5 32-33 1.2298886648876513E-4 4.5841304782176095E-4 0.0 0.003790293249062853 6.708483626659917E-5 34-35 1.3976007555541493E-4 5.087266750217103E-4 0.0 0.006496048311815685 6.708483626659917E-5 36-37 1.4535047857763153E-4 5.646307052438763E-4 0.0 0.010442872845500602 6.708483626659917E-5 38-39 1.4535047857763153E-4 6.149443324438257E-4 0.0 0.01819117143429281 7.267523928881576E-5 40-41 1.5653128462206472E-4 7.435236019548075E-4 0.0 0.0465512859659976 7.826564231103236E-5 42-43 1.6212168764428132E-4 8.050180351991899E-4 0.0 0.0545008390635896 8.385604533324896E-5 44-45 1.6771209066649792E-4 8.721028714657891E-4 0.0 0.06554188503246738 8.944644835546556E-5 46-47 1.6771209066649792E-4 9.168260956435219E-4 0.0 0.0785507528651654 8.944644835546556E-5 48-49 1.6771209066649792E-4 9.224164986657385E-4 0.0 0.09119624450141935 8.944644835546556E-5 50-51 1.6771209066649792E-4 9.950917379545543E-4 0.0 0.10332182865660715 8.944644835546556E-5 52-53 1.6771209066649792E-4 0.0010062725439989875 0.0 0.12625366185373962 8.944644835546556E-5 54-55 1.7889289671093112E-4 0.0010230437530656371 0.0 0.18511501527465818 8.944644835546556E-5 56-57 1.8448329973314771E-4 0.00106776697724337 0.0 0.25062335788899226 8.944644835546556E-5 58-59 1.900737027553643E-4 0.0010845381863100198 0.0 0.32251035035167547 8.944644835546556E-5 60-61 2.0684491182201408E-4 0.0011180806044433194 0.0 0.3408301010554793 8.944644835546556E-5 62-63 2.3479692693309707E-4 0.0011348518135099691 0.0 0.3527041170746673 8.944644835546556E-5 64-65 2.4038732995531367E-4 0.001207527052798785 0.0 0.36133569934096976 8.944644835546556E-5 66-67 2.4597773297753027E-4 0.001235479067909868 0.0 0.36674720946647543 8.944644835546556E-5 68-69 2.4597773297753027E-4 0.0012746118890653842 0.0 0.37196864588922574 8.944644835546556E-5 70-71 2.4597773297753027E-4 0.0013025639041764673 0.0 0.37716213029686496 8.944644835546556E-5 72-73 2.6274894204418006E-4 0.001319335113243117 0.0 0.3807958922613057 1.0062725439989874E-4 74-75 2.7392974808861326E-4 0.0013472871283542 0.0 0.3837029018328584 1.0062725439989874E-4 76-77 2.9070095715526305E-4 0.001431143173687449 0.0 0.3863415720593446 1.0062725439989874E-4 78-79 2.9070095715526305E-4 0.0014423239797318821 0.0 0.3886504085075201 1.0062725439989874E-4 80-81 2.9070095715526305E-4 0.0014423239797318821 0.0 0.3897125850817412 1.0621765742211534E-4 82-83 2.9070095715526305E-4 0.0014646855918207485 0.0 0.39013745571142966 1.2298886648876513E-4 84-85 2.9070095715526305E-4 0.001487047203909615 0.0 0.3904952415048515 1.2298886648876513E-4 86-87 2.9629136017747965E-4 0.0015038184129762648 0.0 0.3906573631924958 1.2857926951098173E-4 88-89 3.0188176319969625E-4 0.0016044456673761634 0.0 0.3907244480287624 1.3416967253319833E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12200 0.0 51.218704 1 GTATCAA 22295 0.0 38.30527 1 TCAACGC 25590 0.0 33.338593 4 ATCAACG 25775 0.0 33.065113 3 CAACGCA 26495 0.0 32.133305 5 TATCAAC 26525 0.0 31.748081 2 AACGCAG 27460 0.0 31.086103 6 ACGCAGA 32000 0.0 26.579412 7 CGCAGAG 32630 0.0 26.052588 8 TGGTATC 5745 0.0 25.235859 2 GTGGTAT 6325 0.0 24.872526 1 GCAGAGT 38780 0.0 22.000496 9 GAGTACT 22260 0.0 21.12289 12-13 GTACATG 29360 0.0 20.787676 1 TACATGG 29195 0.0 20.225931 2 ACATGGG 29120 0.0 19.778639 3 CAGAGTA 38150 0.0 19.361952 10-11 GTACTTT 25145 0.0 18.515903 14-15 AGAGTAC 35040 0.0 17.824722 10-11 CATGGGG 20985 0.0 17.261362 4 >>END_MODULE