##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139682_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9252176 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.315805168427406 30.0 18.0 32.0 18.0 33.0 2 27.732141282223772 29.0 25.0 32.0 18.0 33.0 3 27.35357963359106 29.0 25.0 31.0 18.0 33.0 4 30.702444376328337 32.0 30.0 33.0 27.0 33.0 5 31.212126423016596 33.0 32.0 33.0 28.0 33.0 6 35.09152852258755 37.0 35.0 38.0 29.0 38.0 7 35.63320293517979 38.0 36.0 38.0 31.0 38.0 8 36.09668374228938 38.0 37.0 38.0 33.0 38.0 9 36.58207496268986 38.0 37.0 38.0 34.0 38.0 10-11 36.6750119107116 38.0 38.0 38.0 34.0 38.0 12-13 36.7730790572942 38.0 38.0 38.0 34.0 38.0 14-15 36.77563029497061 38.0 38.0 38.0 34.0 38.0 16-17 36.792569066995696 38.0 38.0 38.0 35.0 38.0 18-19 36.8027356483491 38.0 38.0 38.0 35.0 38.0 20-21 36.844007480625024 38.0 38.0 38.0 35.0 38.0 22-23 36.83064914281914 38.0 38.0 38.0 35.0 38.0 24-25 36.83469515395858 38.0 38.0 38.0 35.0 38.0 26-27 36.79038309583191 38.0 38.0 38.0 35.0 38.0 28-29 36.700853411787094 38.0 38.0 38.0 34.0 38.0 30-31 36.741238050861114 38.0 38.0 38.0 35.0 38.0 32-33 36.73743617250328 38.0 38.0 38.0 34.5 38.0 34-35 36.7136756604351 38.0 38.0 38.0 34.0 38.0 36-37 36.68614866789439 38.0 38.0 38.0 34.0 38.0 38-39 36.65695002936954 38.0 38.0 38.0 34.0 38.0 40-41 36.68744720496097 38.0 38.0 38.0 34.0 38.0 42-43 36.660224717840265 38.0 38.0 38.0 34.0 38.0 44-45 36.599221110113106 38.0 38.0 38.0 34.0 38.0 46-47 36.48226409952308 38.0 38.0 38.0 34.0 38.0 48-49 36.43475150015722 38.0 38.0 38.0 34.0 38.0 50-51 36.44261790615475 38.0 38.0 38.0 34.0 38.0 52-53 36.446740787699135 38.0 38.0 38.0 34.0 38.0 54-55 36.36643254270608 38.0 38.0 38.0 34.0 38.0 56-57 36.37815789084375 38.0 38.0 38.0 34.0 38.0 58-59 36.316402891188105 38.0 38.0 38.0 33.5 38.0 60-61 36.32321301453338 38.0 38.0 38.0 33.0 38.0 62-63 36.338361736947945 38.0 38.0 38.0 33.5 38.0 64-65 36.3232320064274 38.0 38.0 38.0 33.5 38.0 66-67 36.29896397258527 38.0 38.0 38.0 33.0 38.0 68-69 36.27248795453684 38.0 37.5 38.0 33.0 38.0 70-71 36.268926679963656 38.0 37.0 38.0 33.0 38.0 72-73 36.259143742885115 38.0 37.5 38.0 33.0 38.0 74-75 36.22438429770398 38.0 37.0 38.0 33.0 38.0 76-77 36.2165273080162 38.0 37.0 38.0 33.0 38.0 78-79 36.20537267442823 38.0 37.0 38.0 33.0 38.0 80-81 36.21306835957701 38.0 37.0 38.0 33.0 38.0 82-83 36.182983683487514 38.0 37.0 38.0 33.0 38.0 84-85 36.15506013487482 38.0 37.0 38.0 33.0 38.0 86-87 36.156885347914155 38.0 37.0 38.0 33.0 38.0 88-89 36.164772230641994 38.0 37.0 38.0 33.0 38.0 90-91 36.108224374095066 38.0 37.0 38.0 33.0 38.0 92-93 36.135106966315035 38.0 37.0 38.0 33.0 38.0 94-95 36.09647489227442 38.0 37.0 38.0 33.0 38.0 96-97 36.12571536783953 38.0 37.0 38.0 33.0 38.0 98-99 36.17109464922636 38.0 37.0 38.0 33.0 38.0 100-101 35.63584252738684 38.0 36.0 38.0 30.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 32.0 19 120.0 20 283.0 21 724.0 22 2400.0 23 6575.0 24 14438.0 25 26828.0 26 44608.0 27 67290.0 28 95287.0 29 127563.0 30 163255.0 31 206196.0 32 264220.0 33 349107.0 34 498656.0 35 829125.0 36 1967849.0 37 4587617.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.95737262239715 19.24314885492883 13.166286503845148 21.63319201882887 2 14.65128851850635 20.725329911579717 40.47241427313964 24.150967296774294 3 20.12248794229595 26.06181508004171 29.15490366806684 24.660793309595494 4 13.087958983919027 18.651644759027498 38.4797262827685 29.78066997428497 5 13.980445773559557 38.139911184391224 34.372319668717 13.50732337333222 6 29.73722073596525 37.68643181884996 18.753458645836396 13.82288879934839 7 26.404879297820028 32.992664170410094 22.362493591917065 18.239962939852813 8 23.90488464551474 37.24804845908681 21.015585955130987 17.831480940267458 9 24.970579893854158 17.8410354493905 21.158103780126964 36.030280876628375 10-11 24.184840409434493 27.00973803351774 28.34197598489264 20.463445572155134 12-13 25.03832071504044 24.369850941011066 28.573375603749863 22.01845274019863 14-15 22.222285870912962 25.845271425878625 26.196680651124666 25.73576205208375 16-17 21.818834834097405 29.11293516249583 26.911739465397112 22.156490538009656 18-19 21.724170616728433 27.937741348629768 28.77724656340303 21.560841471238763 20-21 22.422007484575026 27.030992292823523 28.85614580216314 21.690854420438306 22-23 22.07772849424519 27.25578182239153 28.690314006825062 21.976175676538222 24-25 21.8700731221109 27.34046428864856 29.009002970720886 21.780459618519657 26-27 21.824464138628834 27.38194788184441 28.953278463239478 21.840309516287277 28-29 21.4538921654379 27.142827088799322 29.09524684877216 22.30803389699062 30-31 21.795643366981 26.98184598196124 29.15130589582381 22.071204755233957 32-33 21.62909222594374 27.264428397552543 29.15561575942637 21.950863617077342 34-35 21.75092635743254 27.530772393898605 29.19962706951484 21.51867417915402 36-37 21.91849616298147 27.289317703736664 28.74895902886072 22.043227104421142 38-39 21.783590313145197 27.285576620898144 28.987129586342398 21.943703479614264 40-41 22.05459456046011 27.043939857619343 29.020949722520673 21.880515859399875 42-43 22.064746123261124 27.042543590718637 28.988656678757014 21.904053607263226 44-45 21.91827720300902 27.326994348322035 28.790518327402125 21.96421012126682 46-47 22.25475874881938 27.11820359296287 28.26355307963334 22.363484578584412 48-49 22.07743870358463 27.24040138339832 28.384719277159554 22.297440635857498 50-51 21.96819548313948 27.48237483579457 28.416270874810113 22.13315880625584 52-53 22.03405576337269 27.56956060590624 28.50310016198858 21.893283468732484 54-55 22.03135018991535 27.571025584577846 28.23027776082513 22.167346464681675 56-57 22.17084107265379 27.904571774954217 27.902776924705915 22.02181022768608 58-59 21.844724435499437 28.256153295200377 28.204368181132928 21.694754088167265 60-61 22.096380395772496 28.407531735283026 27.817352978017805 21.678734890926673 62-63 21.82931933129811 28.653601447743455 27.768412527757114 21.748666693201322 64-65 21.80773560894548 28.579184148776832 27.732206648074726 21.880873594202956 66-67 21.879493388532445 28.456150346863378 27.691662853038423 21.97269341156575 68-69 21.93047712450753 28.186945728105865 27.857675629341365 22.024901518045233 70-71 21.97799722674294 27.76836713522694 28.04281550501798 22.210820133012135 72-73 22.091646559694514 27.617611652187417 28.024903178220857 22.26583860989721 74-75 22.01205624080354 27.695658665597755 28.005247711522408 22.287037382076303 76-77 22.15155684552296 27.617580130159364 27.932573302674264 22.298289721643414 78-79 22.10686357741813 27.662328855200354 27.863668904347005 22.367138663034513 80-81 22.056184010873917 27.727738781271754 27.911350034492454 22.304727173361876 82-83 22.153070282950228 27.66546772777479 27.971599178744768 22.20986281053022 84-85 22.293877574605563 27.682634692006015 27.825058213726685 22.198429519661737 86-87 22.120630500325746 27.700533873776063 27.949807452373154 22.22902817352504 88-89 22.197321768695385 27.653123972524803 27.940252104222402 22.209302154557406 90-91 22.20458476399051 27.68999104812544 27.900096809865154 22.205327378018893 92-93 22.181216145039905 27.630918574618725 27.961616020551027 22.226249259790336 94-95 22.063195790391706 27.743914347408417 27.977189803335072 22.2157000588648 96-97 22.11710447486927 27.74743242634682 27.961390507237923 22.174072591545993 98-99 22.36946994699254 28.344309189324356 27.99962060543612 21.28660025824698 100-101 22.988291207078145 30.827280164136507 25.389457311979523 20.794971316805825 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2013.0 1 1924.5 2 2322.0 3 3021.0 4 3831.5 5 5640.5 6 7452.5 7 9168.0 8 11473.5 9 12879.0 10 12349.0 11 11403.5 12 11883.0 13 14599.5 14 20580.5 15 27738.0 16 33769.0 17 38635.5 18 40208.0 19 38016.5 20 34585.0 21 31201.5 22 29831.5 23 32341.0 24 38895.5 25 49396.5 26 63652.5 27 80195.0 28 98717.5 29 120168.5 30 141765.0 31 163583.0 32 186557.5 33 210005.0 34 232518.0 35 252193.0 36 275037.0 37 299332.5 38 317404.5 39 330560.5 40 343876.0 41 357795.5 42 367021.5 43 378143.5 44 408732.0 45 430381.0 46 426244.0 47 417633.5 48 399457.0 49 381113.0 50 370349.0 51 356497.5 52 337844.0 53 318080.5 54 298008.0 55 275599.5 56 252359.0 57 227378.0 58 201342.5 59 174137.5 60 144907.0 61 116883.0 62 91555.0 63 70486.0 64 53309.0 65 39159.5 66 28367.5 67 21349.5 68 16342.5 69 11914.5 70 8501.5 71 6017.5 72 4137.5 73 2734.0 74 1742.5 75 1040.5 76 659.0 77 397.5 78 265.5 79 194.0 80 123.0 81 71.0 82 50.0 83 42.5 84 32.0 85 21.0 86 15.0 87 13.0 88 10.0 89 6.0 90 3.0 91 1.5 92 1.0 93 1.5 94 1.5 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.04595675655110754 6 0.0 7 0.002042762697121196 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 8.109193863416199E-5 28-29 2.163273617066498E-5 30-31 2.1654263375283598E-5 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 1.1182693395316766E-5 46-47 0.0 48-49 0.0 50-51 0.0 52-53 6.10122753820131E-4 54-55 1.3896649459912508E-4 56-57 0.003088445623777442 58-59 0.007695609549172189 60-61 0.0032629337640405903 62-63 0.005838871920412124 64-65 0.00670686784468167 66-67 0.00485494238286512 68-69 0.0038569067987043 70-71 0.005259370171240762 72-73 0.003217345226640418 74-75 0.003008745125423758 76-77 0.00255683128536223 78-79 6.397633387457312E-5 80-81 0.0 82-83 0.0 84-85 0.0 86-87 5.2993212298161275E-5 88-89 0.0 90-91 1.6202461639996965E-4 92-93 0.0 94-95 1.1022068868504031E-4 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 129.0 20-21 464.0 22-23 1063.0 24-25 1271.0 26-27 2724.0 28-29 6230.0 30-31 17634.0 32-33 22302.0 34-35 29879.0 36-37 46615.0 38-39 52865.0 40-41 53015.0 42-43 58754.0 44-45 69672.0 46-47 70218.0 48-49 63504.0 50-51 56518.0 52-53 50757.0 54-55 54290.0 56-57 55018.0 58-59 61605.0 60-61 69147.0 62-63 64167.0 64-65 77165.0 66-67 81759.0 68-69 76411.0 70-71 90377.0 72-73 60146.0 74-75 61595.0 76-77 64671.0 78-79 67560.0 80-81 68380.0 82-83 65418.0 84-85 65774.0 86-87 68455.0 88-89 72012.0 90-91 74176.0 92-93 72928.0 94-95 80323.0 96-97 134074.0 98-99 782161.0 100-101 6280950.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.07848480967586 #Duplication Level Percentage of deduplicated Percentage of total 1 89.92639041262791 76.50801040709744 2 6.942985305727249 11.81397339734237 3 1.7259172522973334 4.405152741970085 4 0.6462623635520899 2.1993209072212676 5 0.28825550788044485 1.2262170924255915 6 0.16142900387329068 0.824048103232492 7 0.08931147044317858 0.5318939207000849 8 0.05633467091967541 0.38342947552781537 9 0.03840887253090997 0.294099181036002 >10 0.12167207957229877 1.5872186045708854 >50 0.0024210641095077975 0.13258084398774975 >100 5.704022891102698E-4 0.07204418053971583 >500 4.159417699727161E-5 0.02201114434854755 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 1.0808268238736487E-5 1.0808268238736487E-5 3 0.0 0.0 0.0 1.0808268238736487E-5 1.0808268238736487E-5 4 0.0 2.1616536477472974E-5 0.0 1.0808268238736487E-5 2.1616536477472974E-5 5 0.0 2.1616536477472974E-5 0.0 2.1616536477472974E-5 2.1616536477472974E-5 6 9.727441414862839E-5 2.1616536477472974E-5 0.0 2.1616536477472974E-5 2.1616536477472974E-5 7 9.727441414862839E-5 2.1616536477472974E-5 0.0 3.242480471620946E-5 3.242480471620946E-5 8 9.727441414862839E-5 2.1616536477472974E-5 0.0 4.323307295494595E-5 5.404134119368244E-5 9 9.727441414862839E-5 1.5131575534231082E-4 0.0 5.404134119368244E-5 5.404134119368244E-5 10-11 9.727441414862839E-5 1.5131575534231082E-4 0.0 8.64661459098919E-5 5.404134119368244E-5 12-13 9.727441414862839E-5 1.621240235810473E-4 0.0 9.727441414862839E-5 5.404134119368244E-5 14-15 9.727441414862839E-5 2.485901694909392E-4 0.0 9.727441414862839E-5 1.0808268238736488E-4 16-17 1.0808268238736488E-4 2.485901694909392E-4 0.0 1.1889095062610136E-4 1.0808268238736488E-4 18-19 1.1889095062610136E-4 2.539943036103075E-4 0.0 1.3510335298420607E-4 1.0808268238736488E-4 20-21 1.1889095062610136E-4 2.6480257184904394E-4 0.0 1.621240235810473E-4 1.1348681650673312E-4 22-23 1.1889095062610136E-4 2.9722737656525343E-4 0.0 1.729322918197838E-4 1.242950847454696E-4 24-25 1.1889095062610136E-4 3.242480471620946E-4 0.0 2.0535709653599326E-4 1.621240235810473E-4 26-27 1.1889095062610136E-4 3.242480471620946E-4 0.0 3.458645836395676E-4 1.621240235810473E-4 28-29 1.1889095062610136E-4 3.242480471620946E-4 0.0 7.457705084728177E-4 1.621240235810473E-4 30-31 1.2969921886483784E-4 3.9990592483325006E-4 0.0 0.002204886720702243 1.621240235810473E-4 32-33 1.4050748710357433E-4 3.9990592483325006E-4 0.0 0.00532307210757772 1.8374056005852028E-4 34-35 1.4050748710357433E-4 4.539472660269325E-4 0.0 0.009208644539403487 2.0535709653599326E-4 36-37 1.5131575534231082E-4 4.971803389818784E-4 0.0 0.014958643242411298 2.0535709653599326E-4 38-39 1.5131575534231082E-4 5.07988607220615E-4 0.0 0.02539402622691138 2.1616536477472975E-4 40-41 1.5131575534231082E-4 5.07988607220615E-4 0.0 0.053630627000610456 2.1616536477472975E-4 42-43 1.621240235810473E-4 5.350092778174561E-4 0.0 0.06382282394973895 2.2156949889409798E-4 44-45 1.7833642593915203E-4 5.998588872498751E-4 0.0 0.0769710822621619 2.323777671328345E-4 46-47 1.8374056005852028E-4 6.484960943241892E-4 0.0 0.09143794929971069 2.3778190125220273E-4 48-49 1.8374056005852028E-4 6.484960943241892E-4 0.0 0.10415928101670352 2.593984377296757E-4 50-51 2.1076123065536152E-4 7.241539719953446E-4 0.0 0.11668065977127975 2.593984377296757E-4 52-53 2.2156949889409798E-4 7.349622402340811E-4 0.0 0.1366165105376292 2.6480257184904394E-4 54-55 2.2697363301346624E-4 7.403663743534494E-4 0.0 0.17836885074386827 2.756108400877804E-4 56-57 2.2697363301346624E-4 7.457705084728177E-4 0.0 0.2250227405963743 2.864191083265169E-4 58-59 2.2697363301346624E-4 7.565787767115542E-4 0.0 0.2768483868011158 2.918232424458852E-4 60-61 2.3778190125220273E-4 7.781953131890272E-4 0.0 0.29594119264484375 2.918232424458852E-4 62-63 2.702067059684122E-4 8.21428386143973E-4 0.0 0.30636036322698573 2.918232424458852E-4 64-65 2.8101497420714866E-4 9.187028002926015E-4 0.0 0.31561764497346356 2.918232424458852E-4 66-67 3.1884391304272636E-4 9.295110685313379E-4 0.0 0.32080561372805705 2.9722737656525343E-4 68-69 3.242480471620946E-4 9.565317391281792E-4 0.0 0.3257990336543533 3.0263151068462164E-4 70-71 3.242480471620946E-4 9.727441414862838E-4 0.0 0.3303276980463839 3.3505631540083113E-4 72-73 3.458645836395676E-4 9.835524097250204E-4 0.0 0.33411599606406106 3.8909765659451355E-4 74-75 3.458645836395676E-4 0.0010051689462024934 0.0 0.3371152905003104 3.8909765659451355E-4 76-77 3.5126871775893585E-4 0.001037593750918703 0.0 0.33982276169411385 3.945017907138818E-4 78-79 3.566728518783041E-4 0.001064614421515544 0.0 0.34261129489970793 3.9990592483325006E-4 80-81 3.6748112011704057E-4 0.0010700185556349123 0.0 0.3437893961377302 4.107141930719865E-4 82-83 3.6748112011704057E-4 0.0010700185556349123 0.0 0.34426495994023465 4.4313899778819596E-4 84-85 3.8909765659451355E-4 0.001086230957993017 0.0 0.3446864824015453 4.4313899778819596E-4 86-87 3.8909765659451355E-4 0.0011024433603511218 0.0 0.3448107774862908 4.4313899778819596E-4 88-89 3.9990592483325006E-4 0.0011348681650673311 0.0 0.34487022296160386 4.485431319075642E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13020 0.0 48.362938 1 GTATCAA 23055 0.0 37.11384 1 TCAACGC 26265 0.0 32.495213 4 ATCAACG 26295 0.0 32.425083 3 CTTATAC 11620 0.0 31.93795 1 CAACGCA 26830 0.0 31.843306 5 AACGCAG 27790 0.0 30.839241 6 TATCAAC 27395 0.0 30.837576 2 TATACAC 15915 0.0 26.759298 3 ACGCAGA 32295 0.0 26.510412 7 CGCAGAG 32665 0.0 26.19612 8 TTATACA 15655 0.0 25.704739 2 GCAGAGT 38580 0.0 22.146011 9 GTGGTAT 6365 0.0 21.779482 1 TGGTATC 6060 0.0 21.082882 2 TACACAT 21145 0.0 20.510588 5 GAGTACT 22680 0.0 20.291367 12-13 ACACATC 20000 0.0 20.263609 6 CAGAGTA 37785 0.0 19.565615 10-11 GTACATG 28785 0.0 18.840986 1 >>END_MODULE