##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139681_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9437271 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.112741490627958 28.0 18.0 32.0 18.0 33.0 2 27.585754504665598 29.0 25.0 32.0 18.0 33.0 3 27.256223647704935 29.0 25.0 31.0 18.0 33.0 4 30.657692250227846 32.0 30.0 33.0 27.0 33.0 5 31.185250163950997 33.0 32.0 33.0 28.0 33.0 6 35.05992781175829 37.0 34.0 38.0 29.0 38.0 7 35.61276750450421 38.0 36.0 38.0 31.0 38.0 8 36.08885195730842 38.0 37.0 38.0 33.0 38.0 9 36.578532607572676 38.0 37.0 38.0 34.0 38.0 10-11 36.675195032547016 38.0 38.0 38.0 34.0 38.0 12-13 36.77465111471314 38.0 38.0 38.0 34.0 38.0 14-15 36.77761918673311 38.0 38.0 38.0 34.0 38.0 16-17 36.795000376697885 38.0 38.0 38.0 35.0 38.0 18-19 36.808982013974166 38.0 38.0 38.0 35.0 38.0 20-21 36.847796012919574 38.0 38.0 38.0 35.0 38.0 22-23 36.835270319570284 38.0 38.0 38.0 35.0 38.0 24-25 36.8394396733805 38.0 38.0 38.0 35.0 38.0 26-27 36.79821409411552 38.0 38.0 38.0 35.0 38.0 28-29 36.71540841769149 38.0 38.0 38.0 34.0 38.0 30-31 36.74948466020642 38.0 38.0 38.0 35.0 38.0 32-33 36.73451291016733 38.0 38.0 38.0 34.5 38.0 34-35 36.70546821459783 38.0 38.0 38.0 34.0 38.0 36-37 36.67642686267159 38.0 38.0 38.0 34.0 38.0 38-39 36.63503985219243 38.0 38.0 38.0 34.0 38.0 40-41 36.685100678972645 38.0 38.0 38.0 34.0 38.0 42-43 36.66203435918756 38.0 38.0 38.0 34.0 38.0 44-45 36.602769228841844 38.0 38.0 38.0 34.0 38.0 46-47 36.48584848798427 38.0 38.0 38.0 34.0 38.0 48-49 36.43649434703873 38.0 38.0 38.0 34.0 38.0 50-51 36.44717313521529 38.0 38.0 38.0 34.0 38.0 52-53 36.45371204054072 38.0 38.0 38.0 34.0 38.0 54-55 36.37939402785459 38.0 38.0 38.0 34.0 38.0 56-57 36.395358132311245 38.0 38.0 38.0 34.0 38.0 58-59 36.33603346812493 38.0 38.0 38.0 33.5 38.0 60-61 36.350043317121504 38.0 38.0 38.0 33.0 38.0 62-63 36.36866729477185 38.0 38.0 38.0 34.0 38.0 64-65 36.35769697947386 38.0 38.0 38.0 34.0 38.0 66-67 36.33212464776807 38.0 38.0 38.0 33.0 38.0 68-69 36.30565356876596 38.0 38.0 38.0 33.0 38.0 70-71 36.30225151958622 38.0 38.0 38.0 33.0 38.0 72-73 36.292699497926975 38.0 38.0 38.0 33.0 38.0 74-75 36.25947837548437 38.0 37.5 38.0 33.0 38.0 76-77 36.255822353093855 38.0 37.0 38.0 33.0 38.0 78-79 36.24402876138775 38.0 37.0 38.0 33.0 38.0 80-81 36.25271903302004 38.0 37.0 38.0 33.0 38.0 82-83 36.22426028735426 38.0 37.0 38.0 33.0 38.0 84-85 36.19960712933653 38.0 37.0 38.0 33.0 38.0 86-87 36.202175091431585 38.0 37.0 38.0 33.0 38.0 88-89 36.20918354305546 38.0 37.0 38.0 33.0 38.0 90-91 36.15390795137645 38.0 37.0 38.0 33.0 38.0 92-93 36.176657415150274 38.0 37.0 38.0 33.0 38.0 94-95 36.138203475099445 38.0 37.0 38.0 33.0 38.0 96-97 36.1696668740301 38.0 37.0 38.0 33.0 38.0 98-99 36.21904290261321 38.0 37.0 38.0 33.0 38.0 100-101 35.68864104688976 38.0 36.0 38.0 30.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 4.0 18 47.0 19 138.0 20 354.0 21 874.0 22 2559.0 23 6370.0 24 14306.0 25 26802.0 26 44706.0 27 68186.0 28 95761.0 29 129359.0 30 165886.0 31 210994.0 32 270077.0 33 355582.0 34 506766.0 35 843898.0 36 2018757.0 37 4675845.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.36549061693788 19.241749018333795 13.01561648489272 21.3771438798356 2 14.68378941327424 20.81635676245813 40.409669278332686 24.090184545934942 3 20.010933245426564 26.12892010836607 29.333670719003408 24.526475927203954 4 13.002381726666535 18.82298389015214 38.75644770612182 29.4181866770595 5 13.862288275068527 38.233517822914806 34.53887092545754 13.365322976559128 6 29.43233271567596 37.98123419365619 18.817431437541636 13.769001653126207 7 26.264345782716585 33.06615362737724 22.508793490877594 18.160707099028578 8 23.79252434310724 37.1456112683423 21.223275245566224 17.838589142984237 9 24.87283664949327 17.836406308561024 21.290127198848058 36.00062984309765 10-11 23.92549180796016 27.090797752867328 28.62195013791593 20.36176030125658 12-13 24.92874528332876 24.40204105636482 28.840263126942432 21.82895053336399 14-15 22.117161836297804 25.867329654939443 26.399882974643834 25.61562553411892 16-17 21.636668057958705 29.30310573893661 27.04903779916885 22.01118840393584 18-19 21.63109971092279 28.039202222761222 28.967134672724775 21.36256339359122 20-21 22.299065453241692 27.135288103482086 29.035440105681502 21.530206337594716 22-23 21.98162454642762 27.42721660525425 28.86726668400037 21.72389216431776 24-25 21.85258180121249 27.5744285590812 29.104124971098933 21.468864668607377 26-27 21.99522208941709 27.5766416958747 29.067437144897113 21.3606990698111 28-29 21.688363523234454 27.33885057768699 29.30377697268547 21.66900892639309 30-31 22.15715714573215 27.353330315547275 29.038346391973462 21.45116614674711 32-33 21.87425554460008 27.30698848313199 29.149859729839893 21.668896242428033 34-35 21.671869600282612 27.59367014286435 29.406748204366412 21.32771205248663 36-37 22.016495288850727 27.35539253650094 29.00615863250808 21.62195354214026 38-39 21.602972279074418 27.33148131450677 29.294904589035927 21.770641817382884 40-41 21.888117523690635 27.176334582920024 29.24548799051101 21.690059902878332 42-43 22.00418282698179 27.148598661344852 29.083010263364535 21.764208248308822 44-45 21.79913000362453 27.48533077298232 28.92756625913534 21.78797296425781 46-47 22.18037746698431 27.231230173205823 28.45520172815275 22.133190631657115 48-49 22.00037408146051 27.317926963191848 28.48206980869403 22.199629146653617 50-51 21.812967596481645 27.5054619151334 28.653766625574534 22.027803862810423 52-53 21.928197395134685 27.50598761012218 28.799096137113438 21.766718857629698 54-55 21.920608636778805 27.468592059244063 28.50540654104555 22.10539276293158 56-57 22.123002127096854 27.875217058319496 28.111783914349942 21.88999690023371 58-59 21.78344176147907 28.232319467079463 28.434471838510554 21.549766932930908 60-61 22.02842343346611 28.535846446819985 27.930014505013638 21.505715614700264 62-63 21.70139138940062 28.86127298423841 27.893941632319557 21.543393994041413 64-65 21.726879614141605 28.744934521267556 27.86707918344148 21.661106681149352 66-67 21.80676918289242 28.58582068338166 27.83364004416636 21.773770089559562 68-69 21.80864700054575 28.34821231435451 28.018384920696853 21.824755764402887 70-71 21.92443870012692 27.873276852620933 28.169195416028092 22.03308903122406 72-73 22.078924242695976 27.673651330009108 28.19423890504688 22.053185522248036 74-75 21.9282532203494 27.8679447143458 28.128132152778022 22.07566991252678 76-77 22.054085683327173 27.777310586348293 28.106353719639888 22.062250010684647 78-79 22.00822816905802 27.790296705346563 28.06910033773206 22.132374787863355 80-81 22.01148523916469 27.78349524944334 28.117021895388888 22.087997616003086 82-83 22.077542497521037 27.77864706013407 28.144335455881915 21.99947498646298 84-85 22.186181799702453 27.750396366103836 28.043376638522254 22.020045195671457 86-87 22.0213774298272 27.745160333353674 28.18842167219661 22.045040564622514 88-89 22.09283715052671 27.77251393737556 28.063632008277224 22.07101690382051 90-91 22.119649050622982 27.826787476393317 28.056256130496394 21.997307342487314 92-93 22.145121947170917 27.79486671520872 28.054553371675095 22.00545796594527 94-95 22.04877659361059 27.87035859173764 28.02442691144882 22.056437903202948 96-97 22.104461843447233 27.871794182296618 28.03280410930157 21.990939864954587 98-99 22.3282210041744 28.45287234292573 28.081221792879056 21.137684860020816 100-101 22.909426724692818 30.960889315631846 25.52018182474942 20.60950213492592 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1456.0 1 1469.0 2 2248.0 3 3292.0 4 4149.5 5 6002.5 6 8019.5 7 10265.5 8 13295.5 9 15064.0 10 14281.0 11 12996.0 12 13521.0 13 16548.0 14 22792.5 15 30188.0 16 36481.0 17 41226.5 18 42981.5 19 41435.5 20 38349.0 21 35354.5 22 34816.0 23 38713.0 24 46819.0 25 59736.0 26 76723.5 27 95169.5 28 114901.5 29 135842.5 30 155910.0 31 176664.0 32 198609.0 33 220612.0 34 242577.5 35 262999.5 36 285085.0 37 306176.0 38 322818.5 39 336491.0 40 349221.0 41 362877.5 42 371976.0 43 383221.0 44 417156.5 45 439303.5 46 427234.5 47 410292.0 48 394753.0 49 381303.0 50 370911.0 51 358212.5 52 340570.0 53 321136.5 54 301435.0 55 278773.5 56 254191.0 57 229043.5 58 203602.0 59 176476.5 60 146618.5 61 118811.5 62 93780.0 63 72481.5 64 55136.0 65 41154.5 66 30489.0 67 22840.0 68 17178.0 69 12419.0 70 9074.0 71 6533.0 72 4552.0 73 3129.0 74 2059.0 75 1306.5 76 848.5 77 544.5 78 345.0 79 221.5 80 130.5 81 71.5 82 56.0 83 46.5 84 32.0 85 19.0 86 12.5 87 11.0 88 11.0 89 9.0 90 6.5 91 3.0 92 0.5 93 0.0 94 0.0 95 0.5 96 0.5 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.04469512425784954 6 0.0 7 0.0018755421985868583 8 0.0 9 0.0 10-11 0.0 12-13 1.0596283607835358E-5 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 4.770170027940475E-5 28-29 2.651313932856217E-5 30-31 2.1234563732968354E-5 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 1.0986743614889147E-5 46-47 0.0 48-49 0.0 50-51 0.0 52-53 7.647314900283263E-4 54-55 1.6538271699281754E-4 56-57 0.003176642520928358 58-59 0.00790024873918686 60-61 0.0034823419887322613 62-63 0.005796115579717664 64-65 0.006683505387183822 66-67 0.0051105885890011995 68-69 0.00393176298316528 70-71 0.005366142553014827 72-73 0.003469226630228862 74-75 0.0032849610866127676 76-77 0.002532825703944854 78-79 1.3314992459592963E-4 80-81 0.0 82-83 0.0 84-85 0.0 86-87 3.9449500628496294E-5 88-89 6.6383465949796045E-6 90-91 2.2128075827685588E-4 92-93 0.0 94-95 1.643173620052524E-4 96-97 6.930523237178099E-6 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 148.0 20-21 523.0 22-23 1164.0 24-25 1299.0 26-27 3248.0 28-29 7703.0 30-31 19048.0 32-33 24170.0 34-35 32948.0 36-37 49759.0 38-39 57455.0 40-41 56291.0 42-43 63503.0 44-45 74977.0 46-47 74842.0 48-49 68143.0 50-51 61005.0 52-53 58077.0 54-55 62694.0 56-57 65009.0 58-59 65824.0 60-61 67257.0 62-63 65534.0 64-65 82584.0 66-67 88367.0 68-69 82052.0 70-71 101991.0 72-73 64395.0 74-75 64869.0 76-77 68710.0 78-79 71734.0 80-81 72036.0 82-83 68395.0 84-85 69269.0 86-87 71703.0 88-89 74780.0 90-91 77243.0 92-93 75518.0 94-95 83071.0 96-97 136220.0 98-99 780987.0 100-101 6322726.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.93400278828541 #Duplication Level Percentage of deduplicated Percentage of total 1 90.32607514639656 77.6208119348532 2 6.8302498816972275 11.739014247569111 3 1.5970764319788369 4.117295116763228 4 0.5799970152372695 1.9936586049838696 5 0.25454749390649084 1.0937142525555725 6 0.13651656866913292 0.7038849115596255 7 0.07594675315495653 0.45684859481654805 8 0.0522923935423709 0.35949557539809746 9 0.03628884969624161 0.2806601499882448 >10 0.10854720906588035 1.4354775836258884 >50 0.0020332361556317535 0.1176468462864895 >100 3.896574999172876E-4 0.056968282878337835 >500 3.936299951044944E-5 0.024523898721810718 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.1192567215670717E-5 0.0 0.0 0.0 3 0.0 2.1192567215670717E-5 0.0 0.0 0.0 4 0.0 5.2981418039176795E-5 0.0 0.0 0.0 5 0.0 7.417398525484751E-5 0.0 0.0 0.0 6 4.238513443134143E-5 7.417398525484751E-5 0.0 0.0 0.0 7 4.238513443134143E-5 7.417398525484751E-5 0.0 0.0 0.0 8 4.238513443134143E-5 8.477026886268287E-5 0.0 0.0 0.0 9 4.238513443134143E-5 1.4834797050969502E-4 0.0 0.0 0.0 10-11 4.238513443134143E-5 1.4834797050969502E-4 0.0 1.0596283607835358E-5 0.0 12-13 4.238513443134143E-5 1.4834797050969502E-4 0.0 1.0596283607835358E-5 0.0 14-15 5.2981418039176795E-5 1.9073310494103644E-4 0.0 1.0596283607835358E-5 0.0 16-17 5.2981418039176795E-5 1.9073310494103644E-4 0.0 1.0596283607835358E-5 0.0 18-19 5.2981418039176795E-5 2.2252195576454253E-4 0.0 1.0596283607835358E-5 0.0 20-21 5.827955984309448E-5 2.4371452298021324E-4 0.0 1.0596283607835358E-5 0.0 22-23 6.357770164701216E-5 2.7020523199980167E-4 0.0 1.589442541175304E-5 0.0 24-25 6.357770164701216E-5 3.443792172546492E-4 0.0 2.1192567215670717E-5 0.0 26-27 6.357770164701216E-5 3.7086992627423756E-4 0.0 5.827955984309448E-5 5.298141803917679E-6 28-29 6.357770164701216E-5 3.761680680781552E-4 0.0 2.6490709019588395E-4 1.0596283607835358E-5 30-31 6.357770164701216E-5 4.026587770977436E-4 0.0 9.642618083130175E-4 1.0596283607835358E-5 32-33 6.357770164701216E-5 4.026587770977436E-4 0.0 0.0028239095814881227 1.0596283607835358E-5 34-35 6.357770164701216E-5 4.8213090415650877E-4 0.0 0.004943166303055194 2.1192567215670717E-5 36-37 6.357770164701216E-5 5.61603031215274E-4 0.0 0.008000194123915696 2.1192567215670717E-5 38-39 6.357770164701216E-5 5.721993148231093E-4 0.0 0.01280560874006903 2.1192567215670717E-5 40-41 6.357770164701216E-5 6.622677254897099E-4 0.0 0.0178017564611634 2.1192567215670717E-5 42-43 6.357770164701216E-5 6.834602927053807E-4 0.0 0.02214093459857198 2.6490709019588397E-5 44-45 6.357770164701216E-5 7.523361361563104E-4 0.0 0.027677492783665956 3.178885082350608E-5 46-47 6.357770164701216E-5 8.053175541954872E-4 0.0 0.032996827154799305 3.7086992627423756E-5 48-49 6.357770164701216E-5 8.053175541954872E-4 0.0 0.03848570206365802 4.768327623525911E-5 50-51 9.006841066660054E-5 8.953859648620877E-4 0.0 0.04417060821926169 5.2981418039176795E-5 52-53 9.536655247051822E-5 9.112803902738408E-4 0.0 0.04927271877643441 5.2981418039176795E-5 54-55 1.0066469427443591E-4 9.165785320777585E-4 0.0 0.05477218996890097 5.2981418039176795E-5 56-57 1.0596283607835359E-4 9.324729574895116E-4 0.0 0.06067961808026918 5.827955984309448E-5 58-59 1.0596283607835359E-4 9.589636665090999E-4 0.0 0.06585590262269675 6.357770164701216E-5 60-61 1.0596283607835359E-4 9.801562337247707E-4 0.0 0.07079377078394802 6.357770164701216E-5 62-63 1.0596283607835359E-4 9.907525173326061E-4 0.0 0.07540845229516033 6.357770164701216E-5 64-65 1.0596283607835359E-4 0.0011126097788227126 0.0 0.08020856876950974 7.417398525484751E-5 66-67 1.0596283607835359E-4 0.0011179079206266303 0.0 0.08533187189389814 7.417398525484751E-5 68-69 1.0596283607835359E-4 0.0011496967714501364 0.0 0.09029623076416901 7.417398525484751E-5 70-71 1.1126097788227127E-4 0.001154994913254054 0.0 0.09522880078361637 7.417398525484751E-5 72-73 1.3775168690185967E-4 0.0011602930550579718 0.0 0.09894809632996657 7.417398525484751E-5 74-75 1.3775168690185967E-4 0.0011814856222736423 0.0 0.10190445945655265 7.417398525484751E-5 76-77 1.3775168690185967E-4 0.001223870756704984 0.0 0.10447935637325663 7.417398525484751E-5 78-79 1.3775168690185967E-4 0.001239765182116737 0.0 0.106837029476 7.417398525484751E-5 80-81 1.3775168690185967E-4 0.001239765182116737 0.0 0.10786486898596004 7.417398525484751E-5 82-83 1.3775168690185967E-4 0.001239765182116737 0.0 0.10838408688274397 7.417398525484751E-5 84-85 1.3775168690185967E-4 0.0012556596075284899 0.0 0.10871257167458687 7.417398525484751E-5 86-87 1.3775168690185967E-4 0.0013033428837637491 0.0 0.10879204380164562 7.417398525484751E-5 88-89 1.3775168690185967E-4 0.0013669205854107613 0.0 0.1088132363688613 7.417398525484751E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13295 0.0 48.212116 1 CTTATAC 9730 0.0 44.14004 1 GTATCAA 23455 0.0 37.654476 1 TATACAC 14410 0.0 34.87695 3 TCAACGC 27100 0.0 32.71756 4 TTATACA 14440 0.0 32.67788 2 ATCAACG 27370 0.0 32.331596 3 CAACGCA 27570 0.0 32.128433 5 TATCAAC 28085 0.0 31.292885 2 AACGCAG 28580 0.0 31.116863 6 ACGCAGA 33205 0.0 26.704588 7 CGCAGAG 33890 0.0 26.16427 8 TACACAT 19935 0.0 25.102297 5 GTGGTAT 6570 0.0 24.818316 1 ACACATC 19100 0.0 24.582169 6 ACATCTC 19560 0.0 23.893038 8 TGGTATC 6435 0.0 23.322617 2 GCAGAGT 40225 0.0 22.129663 9 CACATCT 21475 0.0 21.662214 7 ATACACA 25320 0.0 21.300957 4 >>END_MODULE