##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139679_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7640430 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.20381326705434 30.0 18.0 32.0 18.0 33.0 2 27.546373437097127 29.0 25.0 32.0 18.0 33.0 3 27.203753977197618 29.0 25.0 31.0 18.0 33.0 4 30.582415125850247 32.0 30.0 33.0 27.0 33.0 5 31.124581993421835 33.0 32.0 33.0 28.0 33.0 6 35.03223431141964 37.0 34.0 38.0 29.0 38.0 7 35.57207408483554 38.0 36.0 38.0 31.0 38.0 8 36.02960618708633 38.0 36.0 38.0 32.0 38.0 9 36.511082229665085 38.0 37.0 38.0 34.0 38.0 10-11 36.60118121624045 38.0 38.0 38.0 34.0 38.0 12-13 36.704306825662954 38.0 38.0 38.0 34.0 38.0 14-15 36.70228769846723 38.0 38.0 38.0 34.0 38.0 16-17 36.717029146265325 38.0 38.0 38.0 34.0 38.0 18-19 36.730730011269 38.0 38.0 38.0 34.0 38.0 20-21 36.77438841696984 38.0 38.0 38.0 34.5 38.0 22-23 36.758954388217724 38.0 38.0 38.0 34.5 38.0 24-25 36.76241749004298 38.0 38.0 38.0 34.5 38.0 26-27 36.718970693707995 38.0 38.0 38.0 34.5 38.0 28-29 36.62835731607711 38.0 38.0 38.0 34.0 38.0 30-31 36.66811245234059 38.0 38.0 38.0 34.0 38.0 32-33 36.66259126841007 38.0 38.0 38.0 34.0 38.0 34-35 36.635811650849554 38.0 38.0 38.0 34.0 38.0 36-37 36.60608856243289 38.0 38.0 38.0 34.0 38.0 38-39 36.57665844958914 38.0 38.0 38.0 34.0 38.0 40-41 36.60690446763679 38.0 38.0 38.0 34.0 38.0 42-43 36.58061172914576 38.0 38.0 38.0 34.0 38.0 44-45 36.519628794344946 38.0 38.0 38.0 34.0 38.0 46-47 36.40437206337515 38.0 38.0 38.0 34.0 38.0 48-49 36.357441781695634 38.0 38.0 38.0 33.5 38.0 50-51 36.36717044957983 38.0 38.0 38.0 34.0 38.0 52-53 36.38497708309046 38.0 38.0 38.0 34.0 38.0 54-55 36.30538309768322 38.0 38.0 38.0 33.0 38.0 56-57 36.316291550372924 38.0 38.0 38.0 33.0 38.0 58-59 36.25515260285637 38.0 37.5 38.0 33.0 38.0 60-61 36.26411274802246 38.0 37.0 38.0 33.0 38.0 62-63 36.2780106214652 38.0 37.0 38.0 33.0 38.0 64-65 36.26543807653929 38.0 37.0 38.0 33.0 38.0 66-67 36.24216180790134 38.0 37.0 38.0 33.0 38.0 68-69 36.212240077412346 38.0 37.0 38.0 33.0 38.0 70-71 36.20950361439064 38.0 37.0 38.0 33.0 38.0 72-73 36.19828904259792 38.0 37.0 38.0 33.0 38.0 74-75 36.16474576280136 38.0 37.0 38.0 33.0 38.0 76-77 36.15732868591775 38.0 37.0 38.0 33.0 38.0 78-79 36.14175371675833 38.0 37.0 38.0 33.0 38.0 80-81 36.14647257811801 38.0 37.0 38.0 33.0 38.0 82-83 36.11432689246071 38.0 37.0 38.0 33.0 38.0 84-85 36.086957975589044 38.0 37.0 38.0 33.0 38.0 86-87 36.08734115272637 38.0 37.0 38.0 33.0 38.0 88-89 36.08948133981161 38.0 37.0 38.0 33.0 38.0 90-91 36.03350126249888 38.0 37.0 38.0 32.5 38.0 92-93 36.05407637536524 38.0 37.0 38.0 33.0 38.0 94-95 36.01028785806862 38.0 37.0 38.0 31.5 38.0 96-97 36.04177923936486 38.0 37.0 38.0 32.5 38.0 98-99 36.0906842661895 38.0 37.0 38.0 33.0 38.0 100-101 35.5417602079509 38.0 36.0 38.0 30.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 5.0 18 28.0 19 130.0 20 302.0 21 833.0 22 2458.0 23 6392.0 24 13572.0 25 24679.0 26 40337.0 27 60177.0 28 83242.0 29 111024.0 30 141501.0 31 179524.0 32 228692.0 33 301427.0 34 431629.0 35 708841.0 36 1646895.0 37 3658741.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.05020528949287 18.839803518911893 13.082994019970078 21.02699717162516 2 15.03623487159754 20.410120896336988 40.308097842660686 24.245546389404783 3 20.80478454746657 25.500593552980654 28.760501699511675 24.934120200041097 4 13.348528813168892 18.345498878989794 38.13806291007181 30.1679093977695 5 14.1525746089589 37.96396090865702 34.21246735459085 13.670997127793234 6 30.218364673192475 37.32806923170555 18.391530319628608 14.062035775473369 7 26.851960922898115 32.80434748464716 21.876960006701328 18.4667315857534 8 24.062127393353517 37.4394111326195 20.491503750443364 18.006957723583618 9 24.86663708717965 18.023998649290682 21.006684178770044 36.102680084759626 10-11 24.293148422274662 27.039662689141842 27.942969178436293 20.724219710147203 12-13 25.198810799915712 24.299915057136836 28.419140022223882 22.08213412072357 14-15 22.388556665004455 25.880428195795265 26.029025853256947 25.701989285943334 16-17 21.901967559417468 29.27150697015744 26.7170303242095 22.109495146215593 18-19 21.784120789013183 27.966246664127542 28.769061427170982 21.480571119688292 20-21 22.39266381829788 27.039562878901734 28.917805324693617 21.649967978106766 22-23 22.192166184331754 27.165182209191464 28.779362338381137 21.863289268095645 24-25 22.032644748852945 27.26519215078922 28.948323221627568 21.75383987873026 26-27 21.899743078783494 27.30832773242461 28.97761470726572 21.81431448152617 28-29 21.659823436871932 27.19132731961043 29.219023704750512 21.92982553876712 30-31 22.05140461726479 27.002041142483453 28.88460013367935 22.061954106572408 32-33 22.00350698011287 27.20587800362397 29.10028477782663 21.690330238436527 34-35 22.04860693687501 27.48708479914207 28.95663621473372 21.507672049249198 36-37 21.899797062964943 27.268732151137858 28.820568604403384 22.01090218149381 38-39 21.78126555792823 27.271198499106575 29.04915255948342 21.89838338348178 40-41 22.021520058784784 27.08947093562262 29.018596976664345 21.870412028928243 42-43 22.009967240065627 27.121820339078372 28.95846522462464 21.909747196231354 44-45 21.928442972678404 27.342375821765863 28.769163732891883 21.96001747266385 46-47 22.24882951595285 27.223878887806052 28.2560959048546 22.27119569138649 48-49 22.0413698560724 27.323127362815473 28.39403527968956 22.24146750142257 50-51 21.943416744149 27.550388321190418 28.420781223105983 22.0854137115546 52-53 22.112463511913607 27.71082293259325 28.240709805184334 21.93600375030881 54-55 22.095347649852283 27.68934247766136 27.976035464134956 22.2392744083514 56-57 22.20819598676184 28.031690618052014 27.705526137501792 22.054587257684357 58-59 21.95428856486512 28.332069689709904 27.91290145221813 21.800740293206843 60-61 22.15160972103861 28.52570747779712 27.604657293854352 21.718025507309925 62-63 21.936519526173946 28.709393896703943 27.571003110847936 21.78308346627417 64-65 21.93534823133493 28.64078553712351 27.568467542263225 21.85539868927834 66-67 22.034737791296468 28.497757324930767 27.515911411785442 21.951593471987323 68-69 22.01811279869503 28.248577814180457 27.6922326248773 22.041076762247215 70-71 22.075122666156414 27.855947757012057 27.81983030585056 22.24909927098097 72-73 22.20709763144119 27.749350881151475 27.819989679955125 22.22356180745221 74-75 22.06857337943401 27.8935500983298 27.77884329560697 22.259033226629214 76-77 22.233381837460737 27.834929722108136 27.70160594549107 22.23008249494006 78-79 22.15844974349104 27.80555121098222 27.697619020149 22.33838002537774 80-81 22.155155744164144 27.852772254361614 27.72940505049315 22.262666950981096 82-83 22.20317709464367 27.862218794185495 27.802348881246004 22.132255229924837 84-85 22.27509184508242 27.85023123607722 27.705286963154773 22.169389955685585 86-87 22.144963151157462 27.86077232249497 27.797760896296964 22.196503630050604 88-89 22.242125689215904 27.869901803885288 27.689388575078116 22.198583931820693 90-91 22.265391763722675 27.90362468419852 27.678405649572003 22.152577902506803 92-93 22.23261339795167 27.871802549758335 27.719162271717007 22.176421780572987 94-95 22.163793545429105 27.98254574357993 27.701059978127073 22.152600732863895 96-97 22.23443990558333 27.939393909388578 27.697444171760715 22.12872201326738 98-99 22.442450083940145 28.544405040791187 27.751725728830273 21.261419146438392 100-101 23.061306872698825 31.027345116316717 25.205377016478103 20.705970994506355 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2098.0 1 1732.0 2 1517.5 3 2062.5 4 2931.5 5 4235.5 6 5338.5 7 5705.0 8 5875.0 9 6063.0 10 6090.0 11 6911.5 12 8629.0 13 12392.5 14 18807.0 15 27031.5 16 34445.0 17 38734.5 18 40775.0 19 38165.0 20 34234.0 21 31819.5 22 30624.0 23 32856.0 24 38928.0 25 48931.0 26 61236.5 27 74858.0 28 90042.0 29 105993.0 30 121413.5 31 137167.5 32 153690.5 33 170530.5 34 186558.0 35 201365.5 36 218445.5 37 234389.5 38 247768.5 39 259215.0 40 269759.5 41 280827.5 42 287959.5 43 293203.5 44 301624.0 45 319294.5 46 329675.5 47 327430.0 48 324454.5 49 314492.5 50 302356.5 51 291546.5 52 278427.5 53 264209.0 54 249701.0 55 233308.5 56 214754.5 57 194253.5 58 173168.5 59 150818.0 60 126311.5 61 102580.5 62 80730.5 63 61945.0 64 46562.0 65 34489.0 66 25450.5 67 19174.0 68 14383.5 69 10262.5 70 7337.0 71 5264.5 72 3618.0 73 2365.5 74 1572.5 75 1019.0 76 641.0 77 384.0 78 233.0 79 152.5 80 102.5 81 73.5 82 49.5 83 30.0 84 22.5 85 20.0 86 16.0 87 13.0 88 9.0 89 4.5 90 1.5 91 0.0 92 0.0 93 0.5 94 1.5 95 2.0 96 1.5 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.045089085300172894 6 0.0 7 0.0019632402888319113 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 3.930460716813843E-5 28-29 2.621633470342083E-5 30-31 2.6242503828781305E-5 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 7.926650392928927E-4 54-55 2.0274287337826677E-4 56-57 0.0030241177611148107 58-59 0.007862944420023629 60-61 0.003371059744301199 62-63 0.005626150750556497 64-65 0.006566904146822972 66-67 0.005054686021695528 68-69 0.0036887950279158015 70-71 0.005252631935838952 72-73 0.003270277102477613 74-75 0.00283990520290972 76-77 0.002343615967351382 78-79 9.932869086313576E-5 80-81 0.0 82-83 0.0 84-85 0.0 86-87 7.090553059199421E-5 88-89 0.0 90-91 2.724577944846048E-4 92-93 0.0 94-95 1.224595061110151E-4 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 814.0 20-21 2907.0 22-23 1763.0 24-25 1691.0 26-27 3123.0 28-29 5814.0 30-31 13002.0 32-33 15999.0 34-35 22290.0 36-37 34654.0 38-39 39915.0 40-41 38408.0 42-43 43017.0 44-45 51083.0 46-47 51970.0 48-49 46977.0 50-51 66626.0 52-53 38319.0 54-55 41594.0 56-57 44158.0 58-59 47106.0 60-61 49833.0 62-63 46102.0 64-65 55692.0 66-67 59486.0 68-69 57541.0 70-71 67972.0 72-73 44206.0 74-75 44411.0 76-77 47350.0 78-79 50813.0 80-81 51334.0 82-83 47785.0 84-85 47931.0 86-87 50307.0 88-89 54583.0 90-91 58687.0 92-93 55454.0 94-95 61182.0 96-97 105650.0 98-99 651296.0 100-101 5321585.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.13782295963908 #Duplication Level Percentage of deduplicated Percentage of total 1 90.48458188726963 77.94144895182596 2 6.768877264109169 11.661127028227233 3 1.5352739690388724 3.9673547201883834 4 0.5624370191361187 1.937884015211765 5 0.24497186068203275 1.0550671382761152 6 0.12942001908307263 0.6688775214726492 7 0.07320177774784867 0.4413809240382525 8 0.05232686343748108 0.36058576790487645 9 0.036702696184046785 0.2845341311438558 >10 0.10911296075112706 1.4373229743185962 >50 0.00256033090797651 0.14535088482041028 >100 4.853244390616499E-4 0.06396391693738057 >500 2.4013750132595832E-5 0.011128487807449792 >1k 2.401346337725242E-5 0.023973537827065156 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 5.235307436885097E-5 0.0 1.3088268592212742E-5 1.3088268592212742E-5 5 0.0 5.235307436885097E-5 0.0 1.3088268592212742E-5 1.3088268592212742E-5 6 0.0 5.235307436885097E-5 0.0 1.3088268592212742E-5 1.3088268592212742E-5 7 0.0 5.235307436885097E-5 0.0 1.3088268592212742E-5 1.3088268592212742E-5 8 0.0 6.544134296106371E-5 0.0 1.3088268592212742E-5 1.3088268592212742E-5 9 0.0 1.4397095451434017E-4 0.0 1.3088268592212742E-5 1.3088268592212742E-5 10-11 0.0 1.4397095451434017E-4 0.0 1.3088268592212742E-5 1.3088268592212742E-5 12-13 0.0 1.4397095451434017E-4 0.0 1.3088268592212742E-5 1.3088268592212742E-5 14-15 0.0 2.552212375481485E-4 0.0 1.3088268592212742E-5 2.6176537184425484E-5 16-17 0.0 2.6176537184425484E-4 0.0 1.3088268592212742E-5 3.9264805776638225E-5 18-19 0.0 2.6176537184425484E-4 0.0 2.6176537184425484E-5 6.544134296106371E-5 20-21 0.0 2.7485364043646756E-4 0.0 5.235307436885097E-5 9.816201444159557E-5 22-23 0.0 3.141184462131058E-4 0.0 5.235307436885097E-5 1.4397095451434017E-4 24-25 0.0 3.337508491014249E-4 0.0 7.198547725717009E-5 1.9632402888319114E-4 26-27 0.0 3.5338325198974404E-4 0.0 9.161788014548919E-5 1.9632402888319114E-4 28-29 0.0 3.5338325198974404E-4 0.0 3.795597891741695E-4 2.028681631792975E-4 30-31 0.0 3.795597891741695E-4 0.0 0.001020884950192594 2.1595643177151026E-4 32-33 0.0 3.795597891741695E-4 0.0 0.0023755207494866124 2.3558883465982935E-4 34-35 0.0 4.3845699783912686E-4 0.0 0.004155525278027546 2.6176537184425484E-4 36-37 0.0 5.038983408001906E-4 0.0 0.00685170860802337 2.6176537184425484E-4 38-39 0.0 5.824279523534671E-4 0.0 0.01090907187160932 2.6176537184425484E-4 40-41 0.0 6.216927581301052E-4 0.0 0.014959891000899162 2.6176537184425484E-4 42-43 0.0 6.544134296106372E-4 0.0 0.01883401850419414 2.6176537184425484E-4 44-45 0.0 7.394871754600199E-4 0.0 0.023238220885473726 2.6830950614036117E-4 46-47 0.0 8.049285184210836E-4 0.0 0.028048159593111903 2.8139777473257395E-4 48-49 0.0 8.1147265271719E-4 0.0 0.03263559773468247 2.8794190902868035E-4 50-51 1.3088268592212742E-5 9.030905328626792E-4 0.0 0.03704634425025817 2.8794190902868035E-4 52-53 1.3088268592212742E-5 9.030905328626792E-4 0.0 0.0411822371253974 3.141184462131058E-4 54-55 1.3088268592212742E-5 9.16178801454892E-4 0.0 0.04584166074422513 3.402949833975313E-4 56-57 1.3088268592212742E-5 9.423553386393174E-4 0.0 0.05034402513994631 3.402949833975313E-4 58-59 1.3088268592212742E-5 9.423553386393174E-4 0.0 0.055023081161662366 3.402949833975313E-4 60-61 1.3088268592212742E-5 9.88164278712062E-4 0.0 0.05972831372056285 3.402949833975313E-4 62-63 1.3088268592212742E-5 0.0010143408158964874 0.0 0.06406053062458526 3.6647152058195677E-4 64-65 1.3088268592212742E-5 0.0011386793675225086 0.0 0.06818987936542839 3.6647152058195677E-4 66-67 1.3088268592212742E-5 0.0011386793675225086 0.0 0.07263989068678071 3.991921920624886E-4 68-69 1.3088268592212742E-5 0.001145223501818615 0.0 0.07696556345650703 4.3191286354302046E-4 70-71 1.3088268592212742E-5 0.0011779441732991467 0.0 0.081147265271719 4.4500113213523325E-4 72-73 2.6176537184425484E-5 0.0011910324418913595 0.0 0.0842360966594812 4.58089400727446E-4 74-75 2.6176537184425484E-5 0.0012172089790757849 0.0 0.08657235260319118 4.58089400727446E-4 76-77 2.6176537184425484E-5 0.0012499296505563168 0.0 0.08892824094978947 4.58089400727446E-4 78-79 2.6176537184425484E-5 0.0012564737848524232 0.0 0.09093729017869413 4.58089400727446E-4 80-81 2.6176537184425484E-5 0.0012564737848524232 0.0 0.09196471926318284 4.6463353502355237E-4 82-83 2.6176537184425484E-5 0.0012630179191485296 0.0 0.09228538184369205 4.8426593791187143E-4 84-85 2.6176537184425484E-5 0.001269562053444636 0.0 0.09251442654405576 4.908100722079778E-4 86-87 2.6176537184425484E-5 0.001269562053444636 0.0 0.09270420643864286 4.973542065040842E-4 88-89 2.6176537184425484E-5 0.001321915127813487 0.0 0.09278273605019613 4.973542065040842E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12175 0.0 49.2858 1 CTTATAC 6865 0.0 35.740368 1 GTATCAA 20530 0.0 35.0866 1 TCAACGC 23575 0.0 30.517635 4 TGGTATC 5430 0.0 30.204252 2 ATCAACG 24025 0.0 29.855003 3 GTGGTAT 6010 0.0 29.690832 1 CAACGCA 24305 0.0 29.547056 5 TATCAAC 24230 0.0 29.205309 2 AACGCAG 24950 0.0 28.80507 6 TATACAC 10745 0.0 27.800394 3 TTATACA 10470 0.0 26.149557 2 ACGCAGA 28825 0.0 24.947916 7 CGCAGAG 29210 0.0 24.573711 8 TACACAT 14220 0.0 21.34502 5 GAGTACT 20215 0.0 21.30059 12-13 GCGGTAT 665 0.0 21.04578 1 GCAGAGT 34670 0.0 20.804596 9 ACATCTC 13750 0.0 20.442663 8 ACACATC 13520 0.0 20.273493 6 >>END_MODULE