Basic Statistics
Measure | Value |
---|---|
Filename | SRR2139678_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9403026 |
Sequences flagged as poor quality | 0 |
Sequence length | 19-101 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 13445 | 0.0 | 51.46482 | 1 |
GTATCAA | 24190 | 0.0 | 38.157417 | 1 |
TCAACGC | 28180 | 0.0 | 32.692944 | 4 |
ATCAACG | 28405 | 0.0 | 32.311413 | 3 |
CAACGCA | 29110 | 0.0 | 31.58868 | 5 |
TATCAAC | 29235 | 0.0 | 31.185669 | 2 |
AACGCAG | 30245 | 0.0 | 30.460611 | 6 |
CTTATAC | 7400 | 0.0 | 27.28729 | 1 |
TGGTATC | 5880 | 0.0 | 26.495974 | 2 |
ACGCAGA | 35410 | 0.0 | 25.980692 | 7 |
GTGGTAT | 6690 | 0.0 | 25.629744 | 1 |
CGCAGAG | 36120 | 0.0 | 25.469725 | 8 |
TATACAC | 11405 | 0.0 | 22.360243 | 3 |
GCAGAGT | 41985 | 0.0 | 21.85999 | 9 |
GCGGTAT | 630 | 0.0 | 21.413877 | 1 |
GAGTACT | 24915 | 0.0 | 20.696756 | 12-13 |
CAGAGTA | 40565 | 0.0 | 19.842632 | 10-11 |
GTACATG | 29900 | 0.0 | 19.532394 | 1 |
TACATGG | 29120 | 0.0 | 19.0543 | 2 |
TTATACA | 11965 | 0.0 | 18.87682 | 2 |