##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139677_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10107030 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.108228925807087 28.0 18.0 32.0 18.0 33.0 2 27.482552935926776 29.0 25.0 32.0 18.0 33.0 3 27.15938381502776 29.0 25.0 31.0 18.0 33.0 4 30.59480430947568 32.0 30.0 33.0 27.0 33.0 5 31.144551366721974 33.0 32.0 33.0 28.0 33.0 6 35.06301732556448 37.0 35.0 38.0 29.0 38.0 7 35.60577924474351 38.0 36.0 38.0 31.0 38.0 8 36.06867665377465 38.0 36.0 38.0 33.0 38.0 9 36.55372240905587 38.0 37.0 38.0 34.0 38.0 10-11 36.646154805120794 38.0 38.0 38.0 34.0 38.0 12-13 36.74504221319221 38.0 38.0 38.0 34.0 38.0 14-15 36.744753107490524 38.0 38.0 38.0 34.0 38.0 16-17 36.762542012836604 38.0 38.0 38.0 34.0 38.0 18-19 36.7733996535085 38.0 38.0 38.0 34.5 38.0 20-21 36.81415336197597 38.0 38.0 38.0 35.0 38.0 22-23 36.80015729174392 38.0 38.0 38.0 35.0 38.0 24-25 36.80491934274545 38.0 38.0 38.0 35.0 38.0 26-27 36.76280956313232 38.0 38.0 38.0 35.0 38.0 28-29 36.67932126062168 38.0 38.0 38.0 34.0 38.0 30-31 36.713894052705484 38.0 38.0 38.0 34.0 38.0 32-33 36.710452744339534 38.0 38.0 38.0 34.0 38.0 34-35 36.688291407760026 38.0 38.0 38.0 34.0 38.0 36-37 36.6570562107526 38.0 38.0 38.0 34.0 38.0 38-39 36.63893052425111 38.0 38.0 38.0 34.0 38.0 40-41 36.66016725366193 38.0 38.0 38.0 34.0 38.0 42-43 36.630150678583746 38.0 38.0 38.0 34.0 38.0 44-45 36.5726371945583 38.0 38.0 38.0 34.0 38.0 46-47 36.45687400619463 38.0 38.0 38.0 34.0 38.0 48-49 36.41078082901183 38.0 38.0 38.0 34.0 38.0 50-51 36.4233273120165 38.0 38.0 38.0 34.0 38.0 52-53 36.42902968801317 38.0 38.0 38.0 34.0 38.0 54-55 36.35170412659869 38.0 38.0 38.0 34.0 38.0 56-57 36.36638969797269 38.0 38.0 38.0 34.0 38.0 58-59 36.3082357102664 38.0 38.0 38.0 33.5 38.0 60-61 36.32131836641354 38.0 38.0 38.0 33.0 38.0 62-63 36.33781405749852 38.0 38.0 38.0 33.0 38.0 64-65 36.327131850196565 38.0 38.0 38.0 33.5 38.0 66-67 36.30635502355478 38.0 38.0 38.0 33.0 38.0 68-69 36.281187089877456 38.0 37.0 38.0 33.0 38.0 70-71 36.28079839516907 38.0 37.0 38.0 33.0 38.0 72-73 36.273311561867146 38.0 37.0 38.0 33.0 38.0 74-75 36.23756828758056 38.0 37.0 38.0 33.0 38.0 76-77 36.22981530272241 38.0 37.0 38.0 33.0 38.0 78-79 36.21564897637949 38.0 37.0 38.0 33.0 38.0 80-81 36.22018467827972 38.0 37.0 38.0 33.0 38.0 82-83 36.189332917203274 38.0 37.0 38.0 33.0 38.0 84-85 36.160257934204466 38.0 37.0 38.0 33.0 38.0 86-87 36.16012858639692 38.0 37.0 38.0 33.0 38.0 88-89 36.16532005647214 38.0 37.0 38.0 33.0 38.0 90-91 36.107385619407964 38.0 37.0 38.0 33.0 38.0 92-93 36.12778216612549 38.0 37.0 38.0 33.0 38.0 94-95 36.08677737273449 38.0 37.0 38.0 33.0 38.0 96-97 36.117997097283364 38.0 37.0 38.0 33.0 38.0 98-99 36.16261099575941 38.0 37.0 38.0 33.0 38.0 100-101 35.6226299724126 38.0 36.0 38.0 30.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 33.0 19 83.0 20 185.0 21 774.0 22 2577.0 23 7336.0 24 16117.0 25 30314.0 26 49927.0 27 74984.0 28 104927.0 29 139810.0 30 179835.0 31 227982.0 32 292283.0 33 387875.0 34 551309.0 35 916437.0 36 2166624.0 37 4957615.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.68377357146461 19.122353451013797 13.032196401910353 21.16167657561123 2 14.85323581705011 20.933726327120823 40.13983336351035 24.073204492318713 3 20.349420156069588 26.01668343717195 28.950789697863765 24.6831067088947 4 13.254892881489418 18.590871898074905 38.77341810601136 29.380817114424318 5 14.071259440615302 38.15228577738188 34.364111907823144 13.41234287417967 6 29.71574240899651 37.86041992553697 18.791840926562998 13.631996738903515 7 26.497909240600485 32.899802450891244 22.706472261299115 17.895816047209152 8 23.774234369542786 37.43008579177068 21.02638460556662 17.769295233119916 9 24.98862672812884 17.93168715240778 21.53920587947201 35.540480239991375 10-11 24.07053308439769 27.185622284686993 28.47609040440169 20.267754226513624 12-13 24.896200961113205 24.513566299892254 28.86910398010098 21.721128758893563 14-15 22.120810960291994 25.961617804636973 26.463491253117876 25.454079981953154 16-17 21.66790837664477 29.212157280625465 27.170504094674698 21.949430248055066 18-19 21.601533783910803 28.227515897350656 28.99974077449063 21.171209544247915 20-21 22.280517078652643 27.315935112171864 29.081884704611927 21.321663104563566 22-23 22.056442741507414 27.37114128614733 28.900578701636565 21.67183727070869 24-25 21.87424174113849 27.515657983641994 29.05744935276112 21.552650922458398 26-27 21.84782505421628 27.65838418460218 28.990448908429713 21.503341852751827 28-29 21.71753411576477 27.471397656665943 29.15040341413827 21.660664813431016 30-31 21.983119285546394 27.55400179715317 28.954217582373154 21.50866133492728 32-33 21.964445791758745 27.495475396310415 28.982308856649297 21.55776995528154 34-35 21.926073099809788 27.50371551512268 28.989066022038866 21.58114536302867 36-37 21.828838000394523 27.556685417881255 28.92111161140299 21.693364970321234 38-39 21.716356202430344 27.496225662208083 29.086433526156753 21.700984609204816 40-41 21.946521619482137 27.343970662141192 29.022369190128416 21.687138528248255 42-43 21.905305584076206 27.38504601603786 28.93066214568613 21.778986254199793 44-45 21.871090744243048 27.557975407925827 28.777952412895786 21.79298143493533 46-47 22.086928861292815 27.48368633356457 28.378715093768008 22.050669711374603 48-49 21.976873574739205 27.544230529831022 28.4350913580252 22.043804537404572 50-51 21.87874288552735 27.741430287216478 28.430833659562836 21.948993167693338 52-53 21.997533944868145 27.72764985866416 28.438052812240066 21.836763384227623 54-55 21.992299258564977 27.679465908006094 28.298949294028574 22.029285539400355 56-57 22.040396731459815 27.910769716698713 28.169375313710717 21.879458238130752 58-59 21.907633644347648 28.108988551752077 28.262761843534452 21.720615960365823 60-61 22.032853158964194 28.198555680228193 28.0854976644079 21.68309349639971 62-63 21.8940732209798 28.311552588898714 28.078728626022293 21.71564556409919 64-65 21.898650138065854 28.27624885334516 28.023296103375767 21.801804905213217 66-67 21.924812978524198 28.173805238588745 28.022208302369993 21.879173480517064 68-69 21.931151760338047 28.054680878887527 28.094182781752043 21.91998457902238 70-71 21.96600611150736 27.773564069455155 28.23949175048964 22.020938068547842 72-73 22.085477545824382 27.710931506200247 28.165467314909076 22.03812363306629 74-75 21.958881968022073 27.856119955243447 28.12561453350001 22.059383543234475 76-77 22.08516194234257 27.755745658021425 28.10955759048085 22.049534809155162 78-79 21.99288177016187 27.77939648732952 28.08253594438737 22.145185798121236 80-81 22.037942508784948 27.800699418777864 28.09972997503761 22.061628097399584 82-83 22.07282909899754 27.80740368552173 28.14332545649338 21.97644175898735 84-85 22.171646717661044 27.78605245819097 28.055863755339296 21.986437068808694 86-87 22.043772137362865 27.812970344029996 28.140241869986326 22.00301564862081 88-89 22.123768061795136 27.790103204628892 28.03111918040001 22.055009553175964 90-91 22.143894628774287 27.84850115659352 28.01243296621289 21.9951712484193 92-93 22.124068995673213 27.811806597872625 28.05966110463924 22.004463301814923 94-95 22.019004460648752 27.932420867764808 28.035183829441213 22.01339084214523 96-97 22.120477330024578 27.887794357474732 28.053519648002634 21.93820866449806 98-99 22.326819518339118 28.438212658400197 28.109800253040536 21.125167570220153 100-101 22.933983206384568 30.991358963903032 25.53097105161571 20.543686778096696 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1427.0 1 1361.5 2 2027.0 3 3072.5 4 3876.5 5 5531.5 6 7464.0 7 9683.5 8 12725.0 9 14767.0 10 14157.0 11 12824.5 12 13350.5 13 16087.5 14 21854.0 15 28900.0 16 34855.0 17 39373.0 18 40684.5 19 38881.5 20 36259.0 21 33962.0 22 34188.0 23 38637.0 24 47579.5 25 61461.5 26 78778.0 27 97467.5 28 118355.0 29 141888.0 30 164555.0 31 186630.5 32 210553.5 33 235673.5 34 259742.0 35 280460.5 36 303252.5 37 326196.0 38 345043.0 39 359727.5 40 372578.0 41 386790.0 42 396386.0 43 406012.0 44 427390.0 45 440641.0 46 434362.0 47 424943.0 48 415013.5 49 403930.5 50 393498.0 51 381054.5 52 361777.5 53 340707.5 54 319935.5 55 296183.5 56 270283.5 57 242595.0 58 215184.5 59 185884.0 60 154780.5 61 126201.5 62 99308.0 63 74984.0 64 55218.5 65 40194.0 66 29571.0 67 22219.0 68 16551.0 69 11747.5 70 8113.0 71 5650.5 72 3733.5 73 2225.5 74 1353.0 75 829.5 76 528.0 77 335.5 78 222.5 79 138.0 80 86.0 81 59.0 82 45.0 83 33.5 84 22.5 85 16.0 86 13.0 87 11.0 88 8.5 89 5.5 90 3.5 91 2.0 92 1.5 93 0.5 94 0.0 95 0.0 96 0.5 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.044889547176569185 6 0.0 7 0.0017413622003694458 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 4.948544539028725E-5 28-29 2.4751605265359484E-5 30-31 2.972793293061233E-5 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 5.096190078105228E-6 46-47 0.0 48-49 0.0 50-51 0.0 52-53 6.119076283072234E-4 54-55 1.7357012927503228E-4 56-57 0.0028260951250917554 58-59 0.0069403039054150035 60-61 0.0030350943780292627 62-63 0.005521916069250765 64-65 0.00609049001224835 66-67 0.004620676157119414 68-69 0.0035437846460838283 70-71 0.00463823596916915 72-73 0.002941638454445192 74-75 0.0026961731637280264 76-77 0.0021177713121232843 78-79 6.310381748264875E-5 80-81 0.0 82-83 0.0 84-85 0.0 86-87 5.9204626107392926E-5 88-89 0.0 90-91 1.8671700075156603E-4 92-93 0.0 94-95 7.975626485460433E-5 96-97 6.202989865927336E-6 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 100.0 20-21 393.0 22-23 922.0 24-25 1170.0 26-27 2780.0 28-29 6173.0 30-31 16340.0 32-33 20821.0 34-35 28246.0 36-37 44285.0 38-39 51235.0 40-41 50320.0 42-43 56529.0 44-45 67843.0 46-47 68300.0 48-49 62413.0 50-51 55794.0 52-53 53131.0 54-55 57608.0 56-57 60250.0 58-59 61677.0 60-61 62699.0 62-63 59334.0 64-65 68835.0 66-67 74181.0 68-69 72284.0 70-71 81418.0 72-73 61074.0 74-75 61756.0 76-77 66193.0 78-79 68746.0 80-81 69737.0 82-83 65743.0 84-85 66447.0 86-87 69153.0 88-89 73106.0 90-91 75474.0 92-93 74659.0 94-95 83344.0 96-97 142948.0 98-99 865777.0 100-101 7077792.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.73072131680411 #Duplication Level Percentage of deduplicated Percentage of total 1 89.54791919225651 75.8745978557878 2 7.2410799141157485 12.270838484712986 3 1.7743493766287717 4.5102570764933265 4 0.6650296717004937 2.25393775121041 5 0.29873451604783513 1.265599551347973 6 0.1634615227110422 0.8310127636109856 7 0.09024423423405464 0.5352521342933853 8 0.056952801528449476 0.38605215636146456 9 0.03893887470401448 0.29693870468422234 >10 0.12058432408372252 1.5572743429023932 >50 0.002185504446364308 0.12369653674893788 >100 4.620271750115364E-4 0.05405339109672827 >500 3.869447263626067E-5 0.022900724107059105 >1k 1.934589540478013E-5 0.017588526642346187 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 9.894103411190032E-6 2 0.0 4.9470517055950165E-5 0.0 1.9788206822380065E-5 9.894103411190032E-6 3 0.0 4.9470517055950165E-5 0.0 1.9788206822380065E-5 1.9788206822380065E-5 4 0.0 1.0883513752309037E-4 0.0 1.9788206822380065E-5 2.96823102335701E-5 5 0.0 1.187292409342804E-4 0.0 1.9788206822380065E-5 2.96823102335701E-5 6 0.0 1.187292409342804E-4 0.0 1.9788206822380065E-5 5.93646204671402E-5 7 0.0 1.187292409342804E-4 0.0 5.93646204671402E-5 6.925872387833024E-5 8 0.0 1.484115511678505E-4 0.0 6.925872387833024E-5 6.925872387833024E-5 9 0.0 2.8692899892451097E-4 0.0 1.0883513752309037E-4 1.3851744775666047E-4 10-11 0.0 2.96823102335701E-4 0.0 1.5830565457904052E-4 1.3851744775666047E-4 12-13 0.0 2.96823102335701E-4 0.0 1.6819975799023054E-4 1.5335860287344553E-4 14-15 0.0 4.303934983867665E-4 0.0 1.9293501651820565E-4 1.9293501651820565E-4 16-17 1.9788206822380065E-5 4.3534055009236146E-4 0.0 1.9788206822380066E-4 1.9788206822380066E-4 18-19 3.957641364476013E-5 4.5512875691474156E-4 0.0 2.1767027504618073E-4 2.2261732675177574E-4 20-21 3.957641364476013E-5 4.8481106714831163E-4 0.0 2.2261732675177574E-4 2.5229963698534586E-4 22-23 8.90469307007103E-5 4.996522222650967E-4 0.0 2.374584818685608E-4 2.7703489551332095E-4 24-25 1.2862334434547042E-4 5.639638944378319E-4 0.0 2.720878438077259E-4 3.06717205746891E-4 26-27 1.2862334434547042E-4 5.98593256376997E-4 0.0 3.611347745084362E-4 3.2155836086367607E-4 28-29 1.2862334434547042E-4 6.035403080825921E-4 0.0 6.826931353721122E-4 3.265054125692711E-4 30-31 1.4346449946225548E-4 7.321636524280624E-4 0.0 0.001845250286186941 3.265054125692711E-4 32-33 1.5830565457904052E-4 7.321636524280624E-4 0.0 0.004031847140059938 3.660818262140312E-4 34-35 1.5830565457904052E-4 7.964753246007977E-4 0.0 0.006678519802553273 4.0071118815319636E-4 36-37 2.0282911992939567E-4 8.607869967735328E-4 0.0 0.010369020374927155 4.204993949755764E-4 38-39 2.1767027504618073E-4 8.805752035959129E-4 0.0 0.016335164731874744 4.3534055009236146E-4 40-41 2.2261732675177574E-4 0.0010388808581749535 0.0 0.022697073225269936 4.452346535035515E-4 42-43 2.2756437845737075E-4 0.0010932984269364987 0.0 0.028603852961750387 4.501817052091465E-4 44-45 2.2756437845737075E-4 0.0011675042025204238 0.0 0.03504986133414069 4.551287569147415E-4 46-47 2.2756437845737075E-4 0.0012070806161651841 0.0 0.04259411518517309 4.551287569147415E-4 48-49 2.4240553357415581E-4 0.0012070806161651841 0.0 0.04960903450370682 4.6502286032593153E-4 50-51 2.473525852797508E-4 0.0013851744775666046 0.0 0.05674763011488043 4.749169637371216E-4 52-53 2.473525852797508E-4 0.0014148567878001746 0.0 0.0634310969691393 4.947051705595016E-4 54-55 2.5724668869094085E-4 0.0014148567878001746 0.0 0.07075273349341993 5.194404290874767E-4 56-57 2.6714079210213087E-4 0.0014247508912113647 0.0 0.07602629061158421 5.293345324986667E-4 58-59 2.6714079210213087E-4 0.0014346449946225548 0.0 0.08049842535344211 5.441756876154518E-4 60-61 2.6714079210213087E-4 0.0014643273048561248 0.0 0.08463416057931955 5.441756876154518E-4 62-63 2.720878438077259E-4 0.00149895666679529 0.0 0.08872042528814103 5.837521012602119E-4 64-65 2.8692899892451097E-4 0.0017017857867246858 0.0 0.09327171285728844 5.837521012602119E-4 66-67 2.96823102335701E-4 0.0017017857867246858 0.0 0.09739755397975469 6.084873597881871E-4 68-69 2.96823102335701E-4 0.0017265210452526607 0.0 0.10168664780850556 6.332226183161621E-4 70-71 2.96823102335701E-4 0.0017562033554862307 0.0 0.10535736017405707 6.530108251385422E-4 72-73 2.96823102335701E-4 0.001775991562308611 0.0 0.10865704366168895 7.074283939000874E-4 74-75 2.96823102335701E-4 0.0018106209242477762 0.0 0.11124929875542072 7.123754456056824E-4 76-77 2.96823102335701E-4 0.0019046149066540815 0.0 0.11358925421216717 7.272166007224674E-4 78-79 2.96823102335701E-4 0.0019392442685932465 0.0 0.11590447441038565 7.420577558392525E-4 80-81 2.96823102335701E-4 0.0019441913202988415 0.0 0.11669600268328084 7.618459626616325E-4 82-83 2.96823102335701E-4 0.0019491383720044366 0.0 0.11708187271631726 7.964753246007977E-4 84-85 2.96823102335701E-4 0.0019639795271212215 0.0 0.1176260484039327 8.212105831287728E-4 86-87 2.96823102335701E-4 0.0019887147856491967 0.0 0.1178239304721565 8.212105831287728E-4 88-89 2.96823102335701E-4 0.002147020440228237 0.0 0.11790803035115162 8.212105831287728E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12975 0.0 48.97161 1 GTATCAA 22740 0.0 36.992596 1 TCAACGC 25825 0.0 32.33565 4 ATCAACG 26225 0.0 31.758787 3 CAACGCA 26755 0.0 31.178867 5 TATCAAC 27220 0.0 30.468906 2 AACGCAG 27790 0.0 30.020666 6 CTTATAC 7950 0.0 27.101765 1 ACGCAGA 32645 0.0 25.569395 7 GTGGTAT 6680 0.0 25.225391 1 CGCAGAG 33285 0.0 25.064201 8 TGGTATC 6390 0.0 24.10402 2 TATACAC 12250 0.0 21.851282 3 GCAGAGT 39925 0.0 20.9177 9 GTACATG 29005 0.0 20.076187 1 GAGTACT 24310 0.0 19.955475 12-13 TTATACA 12380 0.0 19.778654 2 TACATGG 28590 0.0 19.66157 2 ACATGGG 28635 0.0 19.094315 3 CAGAGTA 38730 0.0 18.97531 10-11 >>END_MODULE