##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139676_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 15750807 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.797056112743938 31.0 31.0 34.0 30.0 34.0 2 31.992871603340706 31.0 31.0 34.0 30.0 34.0 3 32.72316072439971 34.0 31.0 34.0 30.0 37.0 4 35.60115789622716 37.0 35.0 37.0 33.0 37.0 5 35.4654506273869 37.0 35.0 37.0 33.0 37.0 6 35.44589321677296 37.0 35.0 37.0 33.0 37.0 7 35.39119957472655 37.0 35.0 37.0 32.0 37.0 8 35.63442120775145 37.0 35.0 37.0 32.0 39.0 9 36.814481188170234 39.0 37.0 39.0 32.0 39.0 10-11 36.749895132357345 39.0 35.0 39.0 32.0 39.0 12-13 36.83011279993463 39.0 35.5 39.0 32.0 39.5 14-15 37.7485729461354 39.0 37.0 41.0 32.0 41.0 16-17 37.7802373554574 39.0 37.0 41.0 32.0 41.0 18-19 37.818795602028516 40.0 37.0 41.0 32.0 41.0 20-21 37.787217579416364 40.0 37.0 41.0 32.0 41.0 22-23 37.716002456078485 39.0 37.0 41.0 32.0 41.0 24-25 37.60989433479469 39.0 36.5 41.0 32.0 41.0 26-27 37.44461094037633 39.0 36.0 41.0 32.0 41.0 28-29 37.30578176586525 39.0 36.0 40.5 31.0 41.0 30-31 37.20120818701127 39.0 36.0 40.0 31.0 41.0 32-33 37.39620041227005 39.0 36.0 41.0 32.0 41.0 34-35 37.384711527602676 39.0 36.0 41.0 31.0 41.0 36-37 37.261543388882146 39.0 36.0 41.0 31.0 41.0 38-39 37.16381571446004 39.0 36.0 41.0 31.0 41.0 40-41 37.138126690019305 39.0 36.0 40.0 31.0 41.0 42-43 37.06649236707839 39.0 36.0 40.0 31.0 41.0 44-45 37.05245132860193 39.0 35.5 40.0 31.0 41.0 46-47 37.04498217766755 39.0 36.0 40.0 31.0 41.0 48-49 36.965951709811144 39.0 35.0 40.0 30.5 41.0 50-51 36.87432753724849 39.0 35.0 40.0 30.0 41.0 52-53 36.749361861091074 39.0 35.0 40.0 30.0 41.0 54-55 36.63241006759734 38.5 35.0 40.0 30.0 41.0 56-57 36.45709792216243 38.0 35.0 40.0 30.0 41.0 58-59 36.314400468129605 38.0 35.0 40.0 29.5 41.0 60-61 36.1382429124075 38.0 34.0 40.0 29.0 41.0 62-63 35.90757561791848 38.0 34.0 40.0 29.0 41.0 64-65 35.69586271453086 37.0 34.0 40.0 29.0 41.0 66-67 35.43614689356308 37.0 34.0 39.5 28.5 41.0 68-69 35.156601914278774 36.0 34.0 39.0 28.0 40.5 70-71 34.870749082851546 36.0 33.0 39.0 28.0 40.0 72-73 34.55653039706225 35.5 33.0 38.5 28.0 40.0 74-75 34.11723608997739 35.0 32.5 37.5 28.0 39.5 76-77 33.28402459525252 34.5 31.5 36.5 26.5 39.0 78-79 33.58539182937379 35.0 32.0 36.5 27.5 39.0 80-81 33.49286757504377 35.0 32.0 36.0 28.0 38.5 82-83 33.2958651526498 35.0 32.0 36.0 27.5 37.5 84-85 33.07440760428838 35.0 32.0 35.5 27.0 37.0 86-87 32.90276860606623 34.0 32.0 35.0 27.0 36.5 88-89 32.72646730399644 34.0 32.0 35.0 27.0 36.0 90-91 32.63905109831475 34.0 32.0 35.0 27.0 36.0 92-93 32.60448335704503 34.0 32.0 35.0 27.0 36.0 94-95 32.586244200753725 34.0 32.0 35.0 27.0 35.0 96-97 32.52616910226941 34.0 32.0 35.0 27.0 35.0 98-99 32.65570964074304 34.0 32.0 35.0 28.5 35.0 100-101 32.11020792970416 34.0 30.5 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 21.0 20 135.0 21 865.0 22 4213.0 23 14744.0 24 37571.0 25 78909.0 26 139308.0 27 214835.0 28 301726.0 29 393878.0 30 490465.0 31 598911.0 32 728962.0 33 897010.0 34 1138562.0 35 1478680.0 36 2054921.0 37 2943341.0 38 3002375.0 39 1181002.0 40 50370.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.07484747925228 0.010577345281881808 28.0157497052184 30.898825470247438 2 13.939059865753881 26.669089450895257 37.05025639228381 22.34159429106705 3 14.97364547733967 26.402075779355304 34.616791380911465 24.007487362393558 4 12.584910728701077 25.444626424538118 37.76575384359671 24.20470900316409 5 16.622430837988176 37.592588113104306 32.761724526241736 13.023256522665791 6 26.5831903089156 38.68884940308138 21.18038142426607 13.54757886373695 7 24.87463023323186 33.360614475182125 23.768610713089178 17.996144578496835 8 23.796647371782285 32.49473503167171 22.72578795486479 20.982829641681217 9 23.119167560007252 20.76665922789343 24.577556512190966 31.536616699908354 10-11 24.13743757302009 26.44299953742038 29.557713950057906 19.86184893950162 12-13 24.438289794614114 24.507639124195997 29.168592772394202 21.885478308795683 14-15 21.889157806327002 27.005451212753734 26.962440718116852 24.142950262802408 16-17 21.224647662944427 29.05803813097266 27.911283061552812 21.806031144530102 18-19 21.404843778351804 28.385937772407456 29.264031797318758 20.945186651921983 20-21 22.12768298545484 27.790023444738832 28.957301661068207 21.12499190873812 22-23 21.988684151620937 27.486833896109463 28.79953263387166 21.724949318397936 24-25 21.710445625348743 27.784478014082143 28.91410757901951 21.59096878154961 26-27 21.696872626879934 27.981182093142493 28.72559079907256 21.596354480905013 28-29 21.804771064322026 27.764510588192064 28.74810149218852 21.68261685529739 30-31 21.941330734770993 27.702563381959642 28.764539271944333 21.591566611325028 32-33 21.736039772536184 28.048197310849414 28.68313484628404 21.532628070330357 34-35 21.917397540276344 27.79972529123092 28.624289419557886 21.65858774893485 36-37 21.862695118671173 27.869670980236855 28.684057306262247 21.58357659482973 38-39 21.698746495184952 28.082960944635072 28.687391476549095 21.530901083630873 40-41 21.978143160476083 27.71079085365391 28.50912446602885 21.801941519841154 42-43 21.761156208097976 27.84087025444441 28.562762608316493 21.83521092914112 44-45 21.869462659203663 28.09889879985356 28.221127927880634 21.81051061306214 46-47 22.00895165534163 27.837367600769653 28.072365804957926 22.08131493893079 48-49 21.820794238593894 28.021725873295434 28.148051774913885 22.009428113196787 50-51 21.891420436792263 28.246873970863106 27.915526048730342 21.946179543614285 52-53 22.03838511689924 27.9529941732294 27.836708902877106 22.171911806994252 54-55 21.949867161105907 27.87074170507934 28.050863748085213 22.128527385729537 56-57 21.914496415158286 28.19395763826602 27.862092203355342 22.029453743220348 58-59 22.02320233680101 27.934488322190298 27.90917441653414 22.133134924474554 60-61 21.979200883673368 28.012081243549407 27.971737372993733 22.036980499783493 62-63 21.933963468156943 28.223000653721748 27.873741656539412 21.96929422158189 64-65 22.011984495098826 27.95088778755732 27.830652093822916 22.206475623520937 66-67 21.918070878601288 28.129562667733044 27.770097279563917 22.18226917410175 68-69 21.946639586525325 28.230627161940557 27.7218806735782 22.10085257795592 70-71 22.027554779507323 27.79669791609344 27.831401296250707 22.34434600814853 72-73 21.937981151584417 27.95093095045748 27.754563378537668 22.356524519420436 74-75 21.87005378307094 28.13995731271781 27.751252975436092 22.238735928775156 76-77 22.15094634927359 27.893892856206687 27.569669142724525 22.385491651795203 78-79 21.956256287730014 27.948671006592807 27.730775795215617 22.36429691046156 80-81 22.022385189774706 28.073242869270643 27.579012050494317 22.325359890460334 82-83 22.126703792969803 27.84863767641103 27.689242226729228 22.33541630388994 84-85 22.031156434761385 27.940896863470172 27.800117825845906 22.227828875922537 86-87 21.999990417826577 28.053745509840628 27.723283375129764 22.22298069720303 88-89 22.101120089236428 27.884350206065573 27.701657783982515 22.312871920715484 90-91 22.065278211932302 27.897883244731958 27.830413974162198 22.206424569173542 92-93 22.04871756125854 27.96420136647218 27.80901026601686 22.178070806252414 94-95 21.993892633760098 27.750789413516053 27.93442434275778 22.320893609966063 96-97 21.808671007515162 27.9798238128339 28.075715316420137 22.135789863230805 98-99 22.160868359394048 28.982264275701386 27.97880133508373 20.878066029820836 100-101 22.641117570450135 30.99570976102418 24.90713852514266 21.456034143383025 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2897.0 1 2640.5 2 3702.0 3 5259.5 4 6661.0 5 9773.0 6 12335.0 7 14733.0 8 16823.5 9 17199.0 10 16245.5 11 14914.5 12 16275.5 13 20999.0 14 33355.0 15 52694.5 16 69544.0 17 78483.0 18 79590.5 19 76213.5 20 71320.0 21 67816.0 22 68318.5 23 75584.0 24 91076.5 25 114773.0 26 146127.0 27 180993.0 28 217619.5 29 256462.5 30 293977.0 31 329879.0 32 368497.5 33 408126.0 34 446379.5 35 481546.5 36 520184.0 37 554430.5 38 576010.5 39 594528.0 40 612976.0 41 629101.5 42 638664.0 43 645644.5 44 651430.5 45 655315.5 46 654056.5 47 646782.5 48 638108.5 49 625652.0 50 609254.5 51 587263.0 52 559785.0 53 528589.5 54 493363.0 55 455577.0 56 415685.0 57 375211.5 58 332987.5 59 286490.5 60 237783.0 61 192501.5 62 152277.0 63 116837.5 64 86997.0 65 64545.5 66 48147.5 67 36405.5 68 27673.0 69 19937.0 70 14011.0 71 9835.0 72 6673.5 73 4426.0 74 2960.5 75 1973.0 76 1372.0 77 929.5 78 614.0 79 429.5 80 310.5 81 221.0 82 164.0 83 118.0 84 84.5 85 57.0 86 42.0 87 32.5 88 24.0 89 20.0 90 14.5 91 10.0 92 9.5 93 5.5 94 2.0 95 1.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0010348676102754607 2 0.0021141773878633648 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 1.2697762089269458E-5 10-11 3.1744405223173647E-5 12-13 7.237724390883591E-4 14-15 0.0 16-17 9.84076561918383E-5 18-19 2.8569964700856276E-4 20-21 6.984115233075958E-5 22-23 0.0014223984190041574 24-25 8.511076689945732E-4 26-27 0.004276238663678595 28-29 2.606458244093925E-4 30-31 9.54605000201899E-6 32-33 3.82538433875538E-5 34-35 0.001169639756707261 36-37 0.02147270760802666 38-39 0.010731666513334112 40-41 0.011250133005500113 42-43 0.001690822801378719 44-45 0.0027067741974102057 46-47 1.2938586138322046E-4 48-49 5.320577332834738E-4 50-51 3.710879445030557E-5 52-53 2.9228420342885397E-4 54-55 0.005063044315775946 56-57 0.010030842684641349 58-59 0.009734099008211202 60-61 0.006276333953649607 62-63 0.006288662958647893 64-65 6.404991169878793E-4 66-67 7.590133650326228E-5 68-69 2.5576710986965815E-5 70-71 9.239443049329608E-5 72-73 3.738695400185843E-5 74-75 1.7019212080826733E-4 76-77 7.653368237794744E-5 78-79 3.952064250335838E-4 80-81 0.0020657653279590967 82-83 0.0031496622335668465 84-85 0.009098098327919682 86-87 0.018047263933660747 88-89 0.03254708984231815 90-91 5.247206254094355E-4 92-93 5.307346951755482E-4 94-95 0.0014915812813609927 96-97 0.008011916930699192 98-99 9.685318669502592E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 504.0 20-21 1574.0 22-23 3120.0 24-25 5706.0 26-27 7270.0 28-29 13309.0 30-31 26567.0 32-33 35254.0 34-35 52505.0 36-37 77450.0 38-39 86550.0 40-41 96954.0 42-43 110232.0 44-45 129391.0 46-47 131120.0 48-49 122984.0 50-51 113482.0 52-53 103182.0 54-55 113468.0 56-57 121285.0 58-59 129520.0 60-61 133000.0 62-63 129349.0 64-65 136795.0 66-67 148055.0 68-69 154073.0 70-71 156090.0 72-73 153404.0 74-75 154430.0 76-77 156834.0 78-79 171815.0 80-81 175879.0 82-83 169743.0 84-85 172838.0 86-87 183552.0 88-89 203251.0 90-91 223614.0 92-93 244994.0 94-95 309616.0 96-97 471180.0 98-99 1591111.0 100-101 9029757.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.04643973214694 #Duplication Level Percentage of deduplicated Percentage of total 1 89.12775480135254 74.90870472373446 2 7.525912514306979 12.650523051262239 3 1.84178131723872 4.643854874372948 4 0.6989286805411616 2.349698689046869 5 0.3126007118354879 1.3136488443753784 6 0.16727699761177503 0.8435421659011523 7 0.09629827533813684 0.5665469036161487 8 0.06012824041178596 0.40428516271753684 9 0.03793852326634776 0.28697380283085766 >10 0.12684338600059608 1.65787236117249 >50 0.0035930359617348732 0.20651663328523745 >100 8.76794953158441E-4 0.12272540008927574 >500 5.3388345567308395E-5 0.03151478370081775 >1k 1.3332836063731622E-5 0.013592603894617753 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 6.348881044634729E-6 2 0.0 4.44421673124431E-5 0.0 6.348881044634729E-6 6.348881044634729E-6 3 0.0 4.44421673124431E-5 0.0 6.348881044634729E-6 6.348881044634729E-6 4 0.0 4.44421673124431E-5 0.0 6.348881044634729E-6 6.348881044634729E-6 5 6.348881044634729E-6 4.44421673124431E-5 0.0 1.2697762089269458E-5 6.348881044634729E-6 6 3.1744405223173647E-5 4.44421673124431E-5 0.0 1.9046643133904185E-5 6.348881044634729E-6 7 4.44421673124431E-5 5.079104835707783E-5 0.0 1.9046643133904185E-5 1.2697762089269458E-5 8 5.079104835707783E-5 5.079104835707783E-5 0.0 1.9046643133904185E-5 1.2697762089269458E-5 9 5.713992940171256E-5 1.0158209671415566E-4 0.0 2.5395524178538916E-5 1.9046643133904185E-5 10-11 6.031436992402993E-5 1.0158209671415566E-4 0.0 3.491884574549101E-5 1.9046643133904185E-5 12-13 6.348881044634729E-5 1.0158209671415566E-4 0.0 3.809328626780837E-5 1.9046643133904185E-5 14-15 6.348881044634729E-5 1.5554758559355086E-4 0.0 5.713992940171256E-5 4.444216731244311E-5 16-17 1.0793097775879039E-4 1.777686692497724E-4 0.0 8.253545358025148E-5 5.713992940171256E-5 18-19 1.0793097775879039E-4 1.777686692497724E-4 0.0 2.5078080126307177E-4 6.983769149098202E-5 20-21 1.1110541828110776E-4 1.872919908167245E-4 0.0 5.015616025261435E-4 7.618657253561674E-5 22-23 1.1427985880342512E-4 2.222108365622155E-4 0.0 6.983769149098201E-4 9.523321566952094E-5 24-25 1.2697762089269459E-4 2.3173415812916762E-4 0.0 0.0011078797422887602 1.2062873984805985E-4 26-27 1.333265019373293E-4 2.3490859865148497E-4 0.0 0.002558599060987796 1.238031803703772E-4 28-29 1.3967538298196403E-4 2.3808303917380232E-4 0.0 0.010205826279250327 1.2697762089269459E-4 30-31 1.3967538298196403E-4 2.7935076596392807E-4 0.0 0.017230863155138654 1.3650094245964669E-4 32-33 1.5237314507123348E-4 2.8252520648624547E-4 0.0 0.026166913225462034 1.4602426402659876E-4 34-35 1.5872202611586823E-4 3.3649069536564066E-4 0.0 0.038232961650790334 1.5237314507123348E-4 36-37 1.6507090716050296E-4 3.936306247673532E-4 0.0 0.05593046756270964 1.5237314507123348E-4 38-39 1.6507090716050296E-4 4.0632838685662265E-4 0.0 0.08828436536616822 1.6189646663818558E-4 40-41 1.6507090716050296E-4 4.2537502999052685E-4 0.0 0.1380786393992384 1.7459422872745503E-4 42-43 1.968153123836766E-4 5.079104835707783E-4 0.0 0.1683691508631907 1.8411755029440713E-4 44-45 1.968153123836766E-4 5.904459371510298E-4 0.0 0.20780839991246164 1.968153123836766E-4 46-47 1.968153123836766E-4 5.904459371510298E-4 0.0 0.24726987004538878 2.0633863395062868E-4 48-49 2.0633863395062868E-4 5.936203776733472E-4 0.0 0.2814776411138807 2.1903639603989812E-4 50-51 2.0951307447294605E-4 6.571091881196944E-4 0.0 0.3157171565875958 2.222108365622155E-4 52-53 2.1586195551758077E-4 6.634580691643292E-4 0.0 0.36360676630727556 2.666530038746586E-4 54-55 2.1586195551758077E-4 6.793302717759159E-4 0.0 0.43910765969007176 3.110951711871017E-4 56-57 2.2855971760685022E-4 6.920280338651854E-4 0.0 0.5141069914703418 3.301418143210059E-4 58-59 2.3490859865148497E-4 7.14249117521407E-4 0.0 0.572834141133213 3.39665135887958E-4 60-61 2.412574796961197E-4 7.459935227445806E-4 0.0 0.6087656334053233 3.491884574549101E-4 62-63 2.412574796961197E-4 7.555168443115327E-4 0.0 0.6321644344953246 3.74583981633449E-4 64-65 2.412574796961197E-4 8.317034168471495E-4 0.0 0.6467541631358952 3.74583981633449E-4 66-67 2.412574796961197E-4 8.380522978917842E-4 0.0 0.6547442299305679 3.9363062476735315E-4 68-69 2.476063607407544E-4 8.729711436372752E-4 0.0 0.6629533331212807 4.0632838685662265E-4 70-71 2.476063607407544E-4 8.88843346248862E-4 0.0 0.6703434306572356 4.44421673124431E-4 72-73 2.5395524178538917E-4 8.920177867711794E-4 0.0 0.6756828396157732 4.7934051886992205E-4 74-75 2.6347856335234127E-4 9.047155488604489E-4 0.0 0.6803365694214906 4.8568939991455674E-4 76-77 2.730018849192933E-4 9.650299187844787E-4 0.0 0.6844093766116237 4.888638404368741E-4 78-79 2.730018849192933E-4 9.935998834853352E-4 0.0 0.6878504701378159 4.888638404368741E-4 80-81 2.730018849192933E-4 9.999487645299698E-4 0.0 0.6896948200812822 5.237826861823651E-4 82-83 2.7935076596392807E-4 0.001003123205052287 0.0 0.691174109364682 5.650504129724909E-4 84-85 2.920485280531975E-4 0.0010094720860969219 0.0 0.692332780155328 5.713992940171256E-4 86-87 2.920485280531975E-4 0.0010094720860969219 0.0 0.6925359443487562 5.777481750617603E-4 88-89 2.920485280531975E-4 0.001088833099154856 0.0 0.6925994331592026 5.872714966287124E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15730 0.0 49.44763 1 GTATCAA 29470 0.0 35.937084 1 ATCAACG 35075 0.0 29.343931 3 TCAACGC 36475 0.0 28.229305 4 CAACGCA 37520 0.0 27.420387 5 AACGCAG 38290 0.0 26.980179 6 TATCAAC 39115 0.0 26.542244 2 ACGCAGA 39475 0.0 26.106089 7 CGCAGAG 46540 0.0 22.115627 8 GTACATG 44310 0.0 20.012163 1 ACATGGG 42915 0.0 19.39277 3 TACATGG 44670 0.0 19.34573 2 AGAGTAC 49130 0.0 18.529171 10-11 GCAGAGT 55405 0.0 18.33898 9 GAGTACT 29215 0.0 17.345934 12-13 CAGAGTA 53960 0.0 16.365952 10-11 CATGGGG 31580 0.0 16.288996 4 AGTACTT 33285 0.0 16.036661 12-13 GTACTTT 33740 0.0 15.133465 14-15 GTGGTAT 8510 0.0 14.049952 1 >>END_MODULE