##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139675_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12714418 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.642844525010897 31.0 31.0 34.0 30.0 34.0 2 31.88213695664245 31.0 31.0 34.0 30.0 34.0 3 31.891727564722192 31.0 31.0 34.0 30.0 34.0 4 35.64319216184335 37.0 35.0 37.0 33.0 37.0 5 35.47322795270692 37.0 35.0 37.0 33.0 37.0 6 35.469167523043524 37.0 35.0 37.0 33.0 37.0 7 35.33598981880256 37.0 35.0 37.0 32.0 37.0 8 35.31055994855604 37.0 35.0 37.0 32.0 37.0 9 36.82960863800451 39.0 37.0 39.0 33.0 39.0 10-11 36.75305137836431 39.0 35.0 39.0 32.0 39.0 12-13 36.68607674374084 39.0 35.0 39.0 32.0 39.0 14-15 37.7407214785608 39.0 37.0 41.0 32.0 41.0 16-17 37.79146233826826 40.0 37.0 41.0 32.0 41.0 18-19 37.83434802127789 40.0 37.0 41.0 32.0 41.0 20-21 37.81777032151109 40.0 37.0 41.0 32.0 41.0 22-23 37.74636009158701 39.5 37.0 41.0 32.0 41.0 24-25 37.65156239576504 39.0 37.0 41.0 32.0 41.0 26-27 37.48745844948389 39.0 36.0 41.0 32.0 41.0 28-29 37.349903014002535 39.0 36.0 41.0 31.5 41.0 30-31 37.204344597395206 39.0 36.0 40.0 31.0 41.0 32-33 37.41185157052138 39.0 36.0 41.0 32.0 41.0 34-35 37.4114723486274 39.0 36.0 41.0 31.5 41.0 36-37 37.297455253974555 39.0 36.0 41.0 31.0 41.0 38-39 37.18406864807011 39.0 36.0 41.0 31.0 41.0 40-41 37.166298760459085 39.0 36.0 40.5 31.0 41.0 42-43 37.097641481685656 39.0 36.0 40.0 31.0 41.0 44-45 37.07228063456745 39.0 36.0 40.0 31.0 41.0 46-47 37.08519765207805 39.0 36.0 40.0 31.0 41.0 48-49 37.00956320516284 39.0 35.5 40.0 31.0 41.0 50-51 36.931002004366704 39.0 35.0 40.0 30.5 41.0 52-53 36.80625441157689 39.0 35.0 40.0 30.0 41.0 54-55 36.70508813354333 39.0 35.0 40.0 30.0 41.0 56-57 36.53352754457469 38.0 35.0 40.0 30.0 41.0 58-59 36.39321559981555 38.0 35.0 40.0 30.0 41.0 60-61 36.235168557029674 38.0 34.5 40.0 29.5 41.0 62-63 36.00923794488358 38.0 34.0 40.0 29.0 41.0 64-65 35.80818640883744 37.5 34.0 40.0 29.0 41.0 66-67 35.55986140705395 37.0 34.0 40.0 29.0 41.0 68-69 35.29099823083142 36.5 34.0 39.0 28.0 41.0 70-71 35.0115260198198 36.0 33.5 39.0 28.0 40.0 72-73 34.71075045741944 36.0 33.0 39.0 28.0 40.0 74-75 34.3890241022972 35.0 33.0 38.0 28.0 40.0 76-77 33.32480168741902 34.5 31.5 37.0 26.5 39.0 78-79 33.69323586832361 35.0 32.0 37.0 28.0 39.0 80-81 33.613778224488755 35.0 32.0 36.5 28.0 39.0 82-83 33.41474973712597 35.0 32.0 36.0 28.0 37.5 84-85 33.17657676148401 35.0 32.0 36.0 27.5 37.0 86-87 32.99828009473818 34.5 32.0 35.0 27.0 37.0 88-89 32.800233156391684 34.0 32.0 35.0 27.0 36.0 90-91 32.69780795270506 34.0 32.0 35.0 27.0 36.0 92-93 32.65172420083118 34.0 32.0 35.0 27.0 36.0 94-95 32.636449340853545 34.0 32.0 35.0 27.0 35.5 96-97 32.545701399877046 34.0 32.0 35.0 27.0 35.0 98-99 32.68504339016154 34.0 32.0 35.0 28.5 35.0 100-101 32.24533192244575 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 1.0 16 0.0 17 1.0 18 5.0 19 17.0 20 114.0 21 748.0 22 3545.0 23 11567.0 24 29838.0 25 62814.0 26 109916.0 27 169685.0 28 238602.0 29 311628.0 30 390426.0 31 478340.0 32 582047.0 33 719907.0 34 914859.0 35 1187758.0 36 1654591.0 37 2380449.0 38 2462859.0 39 975672.0 40 29028.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.70224622157302 23.111816836602355 16.20222018813602 23.983716753688608 2 13.413947747739527 23.452206546862193 41.0139486286625 22.119897076735782 3 16.027088302429572 28.83397415438127 32.15946652060676 22.979471022582395 4 11.616457788315596 20.490894667770085 40.200959257435144 27.691688286479177 5 12.06227449813275 39.02664675646184 36.65699051266051 12.254088232744904 6 27.55995594922237 40.557145439138466 19.591624248943205 12.291274362695956 7 24.506619178321806 33.599351539331174 25.034610314054483 16.859418968292534 8 23.587332113825425 37.67532261405909 21.973235424539293 16.764109847576194 9 25.138397998241054 16.7696783289648 21.90374738348228 36.18817628931187 10-11 23.155365821699426 27.582402906684365 30.085085294505813 19.177145977110396 12-13 24.280961320816267 25.153162935696244 29.971434963546418 20.594440779941074 14-15 21.45771045123733 26.363397050498104 27.479578695619416 24.699313802645154 16-17 20.937824287356293 29.446404861001106 28.074399473102112 21.54137137854049 18-19 21.026360623771787 28.72673944342388 29.652928304736342 20.59397162806799 20-21 21.9433606842435 27.896426070918878 29.360708705039585 20.79950453979804 22-23 21.646535968031703 27.856834601757978 29.248147472792446 21.248481957417873 24-25 21.374304793835712 28.048409863367834 29.267327284231403 21.309958058565048 26-27 21.40563550341886 28.108120915442335 29.16929759078523 21.31694599035357 28-29 21.363270594489784 28.107100084020768 29.204929769871914 21.32469955161753 30-31 21.603571479807872 28.015099301749718 29.094666979655663 21.286662238786747 32-33 21.42894965041443 28.169615387759094 29.074521723813206 21.32691323801327 34-35 21.527942045892473 28.171637301069335 29.100706091647517 21.199714561390675 36-37 21.511185897881624 28.15315173922286 29.01937988346243 21.316282479433085 38-39 21.417883545873202 28.1894351245292 29.076428675137638 21.316252654459962 40-41 21.578272317008796 28.070945354667497 28.99031651810195 21.36046581022176 42-43 21.474106628892674 28.204816572741453 28.772057644289955 21.549019154075918 44-45 21.56664976662941 28.284402342253813 28.601857144441812 21.547090746674964 46-47 21.638446422175274 28.26361877434015 28.399393053655164 21.69854174982941 48-49 21.59072222077073 28.356486091916892 28.356211946485317 21.69657974082706 50-51 21.588989609935908 28.431002321225986 28.241427781280272 21.738580287557838 52-53 21.72012496644479 28.328972493427905 28.17635858267522 21.774543957452078 54-55 21.687737755746635 28.284784321717098 28.19682177136751 21.830656151168753 56-57 21.68325294846567 28.373104300267094 28.19118253482381 21.752460216443424 58-59 21.65189098527847 28.411797694720054 28.191998356711682 21.74431296328979 60-61 21.774503854638137 28.355461483712997 28.184109265035705 21.685925396613158 62-63 21.714059611501067 28.422764414233793 28.160384301594128 21.70279167267101 64-65 21.659647996521443 28.383916393437875 28.152361536544124 21.804074073496558 66-67 21.703167120982517 28.443811417977138 28.01178420501957 21.84123725602078 68-69 21.66036304613766 28.407960110723874 28.06409896445362 21.867577878684845 70-71 21.682612982913884 28.208368819709328 28.14914661479304 21.959871582583748 72-73 21.71185796501145 28.252554955759834 28.069098590902552 21.966488488326167 74-75 21.596364861997078 28.28773590794011 28.094965436558788 22.020933793504017 76-77 21.729974054297248 28.25104802719247 28.033531151047452 21.98544676746283 78-79 21.70701202667323 28.221879399956062 28.00088432768973 22.07022424568098 80-81 21.692770654492126 28.28015236663261 27.994280309160263 22.032796669714998 82-83 21.70852678488188 28.20485393292304 28.113429355917923 21.973189926277158 84-85 21.729346956332705 28.21303308142971 28.067593077279025 21.99002688495856 86-87 21.657156724392493 28.235178357301923 28.15544677015442 21.95221814815117 88-89 21.689837989321223 28.156904887061586 28.133136064186388 22.020121059430807 90-91 21.721737987574492 28.15812775271478 28.189126235595207 21.931008024115524 92-93 21.712887164706085 28.0674887219143 28.229054805395144 21.99056930798447 94-95 21.513005839401245 28.08374882374092 28.304286259291793 22.09895907756604 96-97 21.47099996024553 28.159049456533847 28.37487957356142 21.99507100965921 98-99 21.636083852672215 28.782950980987877 28.460685992054923 21.12027917428499 100-101 22.187926604598797 31.516635462858776 25.708136606081762 20.587301326460665 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2223.0 1 2110.5 2 3238.5 3 4717.0 4 6048.5 5 8810.0 6 11112.5 7 13407.0 8 15328.5 9 15401.0 10 14234.5 11 13171.0 12 14507.0 13 19384.5 14 31769.0 15 49395.5 16 62901.5 17 69241.5 18 70128.0 19 67452.0 20 63403.5 21 60808.0 22 62207.5 23 69714.0 24 84417.0 25 106076.5 26 132904.5 27 162267.5 28 194971.5 29 229991.0 30 262837.0 31 294947.0 32 328003.5 33 360361.5 34 389915.5 35 417336.5 36 445525.0 37 470739.5 38 489306.0 39 500502.5 40 509726.5 41 519555.5 42 523973.0 43 526668.5 44 528547.0 45 527748.0 46 523214.0 47 514937.0 48 505326.0 49 490057.5 50 471541.5 51 449835.0 52 422464.0 53 393738.5 54 364673.0 55 335325.5 56 305670.5 57 273884.0 58 241015.0 59 205426.0 60 168781.5 61 135784.5 62 106858.0 63 82061.5 64 60201.0 65 43475.5 66 32253.5 67 24329.5 68 18226.5 69 12911.0 70 8911.5 71 6293.0 72 4276.0 73 2779.5 74 1840.5 75 1232.0 76 852.0 77 580.5 78 397.5 79 287.0 80 216.0 81 164.0 82 125.0 83 84.0 84 56.5 85 41.0 86 29.5 87 26.5 88 20.5 89 12.5 90 9.0 91 7.5 92 4.5 93 1.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.003775241619396185 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 7.747110406469255E-4 14-15 0.0 16-17 0.0 18-19 4.443773989497592E-4 20-21 0.0 22-23 0.0014238206772587913 24-25 1.7703582544173192E-4 26-27 0.005139901952237874 28-29 4.094908158887949E-4 30-31 0.0 32-33 3.948624603232329E-6 34-35 2.1374600562151994E-4 36-37 0.021121696765448703 38-39 0.010140491537861656 40-41 0.01378657672027024 42-43 0.0015818931733379876 44-45 0.002919901871722349 46-47 0.0 48-49 6.521295769008227E-4 50-51 4.189861214618141E-5 52-53 4.223437230029974E-6 54-55 0.004383677127113358 56-57 0.009068012194309177 58-59 0.011529227066849904 60-61 0.006132146846690997 62-63 0.006920056968662866 64-65 8.375555264787164E-4 66-67 1.1250813208778731E-4 68-69 0.0 70-71 8.284750177500772E-5 72-73 0.0 74-75 1.3189888273638177E-4 76-77 4.289331826475176E-5 78-79 9.650017507544264E-6 80-81 0.001995337658814573 82-83 0.002057952844713176 84-85 0.009108966158481533 86-87 0.010404452840734234 88-89 0.04363480289103603 90-91 4.896967539687157E-4 92-93 7.086416976048715E-4 94-95 0.0 96-97 0.01017159836011732 98-99 1.358171414696147E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 354.0 20-21 1272.0 22-23 2431.0 24-25 4487.0 26-27 5495.0 28-29 9058.0 30-31 22246.0 32-33 28202.0 34-35 40533.0 36-37 62289.0 38-39 74937.0 40-41 82470.0 42-43 93407.0 44-45 111164.0 46-47 111785.0 48-49 105618.0 50-51 97902.0 52-53 89177.0 54-55 95454.0 56-57 101038.0 58-59 106474.0 60-61 113386.0 62-63 104930.0 64-65 110457.0 66-67 119746.0 68-69 124755.0 70-71 128133.0 72-73 123006.0 74-75 123016.0 76-77 124424.0 78-79 137589.0 80-81 141703.0 82-83 137280.0 84-85 136625.0 86-87 145317.0 88-89 159388.0 90-91 179180.0 92-93 190490.0 94-95 235109.0 96-97 306927.0 98-99 1069736.0 100-101 7557428.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.55561156283613 #Duplication Level Percentage of deduplicated Percentage of total 1 89.40601672346753 75.59780421449952 2 7.32528673109667 12.387881988420155 3 1.8224001143198794 4.622824685354996 4 0.6720773401715439 2.273116420629166 5 0.3035931246480456 1.2835251160443917 6 0.1635052406758976 0.829517137144754 7 0.09073083523271058 0.5370260882496134 8 0.05697272481977288 0.3853890871629655 9 0.03775082399044778 0.28728396085619684 >10 0.11817026900965914 1.5497713315169697 >50 0.002880362059983003 0.15875742979197557 >100 5.999977761620803E-4 0.08019382219294834 >500 1.5712731740166135E-5 0.006908718136385178 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.573017341415077E-5 0.0 7.865086707075385E-6 0.0 3 0.0 1.573017341415077E-5 0.0 7.865086707075385E-6 0.0 4 0.0 7.078578036367847E-5 0.0 7.865086707075385E-6 0.0 5 0.0 7.078578036367847E-5 0.0 7.865086707075385E-6 0.0 6 0.0 7.078578036367847E-5 0.0 7.865086707075385E-6 0.0 7 0.0 7.865086707075385E-5 0.0 1.573017341415077E-5 0.0 8 0.0 8.651595377782924E-5 0.0 1.573017341415077E-5 0.0 9 0.0 1.6516682084858307E-4 0.0 3.146034682830154E-5 0.0 10-11 0.0 1.6516682084858307E-4 0.0 4.719052024245231E-5 0.0 12-13 0.0 1.6516682084858307E-4 0.0 5.505560694952769E-5 0.0 14-15 0.0 1.966271676768846E-4 0.0 5.505560694952769E-5 0.0 16-17 0.0 2.005597110304223E-4 0.0 5.898815030306539E-5 0.0 18-19 0.0 2.202224277981108E-4 0.0 7.865086707075386E-5 7.865086707075385E-6 20-21 2.3595260121226154E-5 2.4381768791933693E-4 0.0 9.438104048490462E-5 7.865086707075385E-6 22-23 2.3595260121226154E-5 2.831431214547138E-4 0.0 1.4943664743443232E-4 7.865086707075385E-6 24-25 2.3595260121226154E-5 3.1853601163655306E-4 0.0 4.6404011571744765E-4 3.146034682830154E-5 26-27 2.3595260121226154E-5 3.3033364169716614E-4 0.0 0.001368525087031117 3.146034682830154E-5 28-29 3.146034682830154E-5 3.3033364169716614E-4 0.0 0.007585876128974208 3.146034682830154E-5 30-31 3.146034682830154E-5 3.814567052931562E-4 0.0 0.01169145139006756 3.146034682830154E-5 32-33 3.146034682830154E-5 4.011194220608446E-4 0.0 0.014538612778028849 3.146034682830154E-5 34-35 3.146034682830154E-5 4.561750290103723E-4 0.0 0.018585199888819133 3.146034682830154E-5 36-37 3.146034682830154E-5 5.112306359599E-4 0.0 0.023626720468054453 3.146034682830154E-5 38-39 3.146034682830154E-5 5.308933527275884E-4 0.0 0.03472829035509136 3.146034682830154E-5 40-41 3.146034682830154E-5 5.426909827882016E-4 0.0 0.060466786603995556 3.146034682830154E-5 42-43 3.146034682830154E-5 5.584211562023524E-4 0.0 0.07130487608634545 3.146034682830154E-5 44-45 3.146034682830154E-5 6.488696533337192E-4 0.0 0.08716089088780941 3.146034682830154E-5 46-47 3.146034682830154E-5 7.314530637580108E-4 0.0 0.10446408164337526 3.146034682830154E-5 48-49 3.9325433535376924E-5 7.314530637580108E-4 0.0 0.11998583025978854 3.146034682830154E-5 50-51 3.9325433535376924E-5 7.6684595393985E-4 0.0 0.13623116685325273 3.146034682830154E-5 52-53 4.325797688891462E-5 7.786435840004631E-4 0.0 0.15796633396825555 3.539289018183923E-5 54-55 5.112306359599E-5 7.983063007681515E-4 0.0 0.2016647557127664 4.325797688891462E-5 56-57 5.505560694952769E-5 8.101039308287646E-4 0.0 0.2464131665326718 5.505560694952769E-5 58-59 5.505560694952769E-5 8.101039308287646E-4 0.0 0.2926992018038105 5.505560694952769E-5 60-61 5.505560694952769E-5 8.179690175358401E-4 0.0 0.3231646151636669 5.505560694952769E-5 62-63 7.078578036367847E-5 8.376317343035285E-4 0.0 0.33789592256601914 6.292069365660308E-5 64-65 7.078578036367847E-5 9.595405782631969E-4 0.0 0.35223004308966405 6.292069365660308E-5 66-67 7.078578036367847E-5 9.674056649702724E-4 0.0 0.359214240085547 6.292069365660308E-5 68-69 7.078578036367847E-5 0.0010067310985056492 0.0 0.3658366430929044 6.292069365660308E-5 70-71 7.865086707075385E-5 0.0010460565320410263 0.0 0.3722820816493527 6.292069365660308E-5 72-73 7.865086707075385E-5 0.0010578541621016394 0.0 0.3773039395118204 6.292069365660308E-5 74-75 7.865086707075385E-5 0.0010932470522834784 0.0 0.38171625315448965 6.292069365660308E-5 76-77 7.865086707075385E-5 0.00117583046270777 0.0 0.3859280070861285 6.292069365660308E-5 78-79 7.865086707075385E-5 0.0012033582661825338 0.0 0.38960493512168626 6.292069365660308E-5 80-81 7.865086707075385E-5 0.0012033582661825338 0.0 0.391504353561445 6.685323701014078E-5 82-83 7.865086707075385E-5 0.0012072908095360716 0.0 0.39295939460225393 7.078578036367847E-5 84-85 7.865086707075385E-5 0.00122695352630376 0.0 0.39443016581647705 7.078578036367847E-5 86-87 7.865086707075385E-5 0.0012348186130108354 0.0 0.39462286044080036 7.078578036367847E-5 88-89 7.865086707075385E-5 0.00127807658989975 0.0 0.39465432078762863 7.078578036367847E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14575 0.0 48.095818 1 GTATCAA 26760 0.0 36.788475 1 TCAACGC 33160 0.0 29.07127 4 ATCAACG 33775 0.0 28.478912 3 CAACGCA 33965 0.0 28.394787 5 AACGCAG 34960 0.0 27.635336 6 TATCAAC 35900 0.0 27.042889 2 ACGCAGA 40655 0.0 23.732925 7 CGCAGAG 41600 0.0 23.244955 8 GTACATG 40285 0.0 19.704153 1 GCAGAGT 48945 0.0 19.452318 9 TACATGG 40425 0.0 19.235825 2 AGAGTAC 44480 0.0 18.917147 10-11 ACATGGG 41175 0.0 18.378431 3 GAGTACT 25605 0.0 17.146019 12-13 CAGAGTA 48360 0.0 16.937346 10-11 CATGGGG 26985 0.0 16.812996 4 AGTACTT 28685 0.0 16.536518 12-13 TATACTG 7955 0.0 14.87356 5 GTACTTT 29645 0.0 14.859972 14-15 >>END_MODULE