##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139674_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9721023 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.605950423119047 31.0 31.0 34.0 30.0 34.0 2 31.851544225335132 31.0 31.0 34.0 30.0 34.0 3 31.862135497467705 31.0 31.0 34.0 30.0 34.0 4 35.620249329725894 37.0 35.0 37.0 33.0 37.0 5 35.44689051759264 37.0 35.0 37.0 33.0 37.0 6 35.43676555440719 37.0 35.0 37.0 33.0 37.0 7 35.30200350312925 37.0 35.0 37.0 32.0 37.0 8 35.277575621413504 37.0 35.0 37.0 32.0 37.0 9 36.79150887720356 39.0 37.0 39.0 32.0 39.0 10-11 36.71139390370746 39.0 35.0 39.0 32.0 39.0 12-13 36.64283774454602 39.0 35.0 39.0 32.0 39.0 14-15 37.687518021508644 39.0 37.0 41.0 32.0 41.0 16-17 37.733309498393325 39.0 37.0 41.0 32.0 41.0 18-19 37.769877408992855 39.5 37.0 41.0 32.0 41.0 20-21 37.748143039545425 39.5 37.0 41.0 32.0 41.0 22-23 37.67838357650359 39.0 37.0 41.0 32.0 41.0 24-25 37.580116847249315 39.0 36.0 41.0 32.0 41.0 26-27 37.405043818239506 39.0 36.0 41.0 32.0 41.0 28-29 37.25976520873158 39.0 36.0 40.5 31.0 41.0 30-31 37.111333452773906 39.0 36.0 40.0 31.0 41.0 32-33 37.328139496710534 39.0 36.0 40.5 31.0 41.0 34-35 37.328774184707015 39.0 36.0 41.0 31.0 41.0 36-37 37.21401338579444 39.0 36.0 41.0 31.0 41.0 38-39 37.098850572843986 39.0 36.0 40.0 31.0 41.0 40-41 37.07680895798021 39.0 36.0 40.0 31.0 41.0 42-43 37.00097289544317 39.0 35.0 40.0 31.0 41.0 44-45 36.97144229619908 39.0 35.0 40.0 30.5 41.0 46-47 36.983525829289874 39.0 35.0 40.0 31.0 41.0 48-49 36.902827789036635 39.0 35.0 40.0 30.0 41.0 50-51 36.8171825649717 39.0 35.0 40.0 30.0 41.0 52-53 36.68745254526908 39.0 35.0 40.0 30.0 41.0 54-55 36.57407591264014 38.5 35.0 40.0 30.0 41.0 56-57 36.400123042260304 38.0 35.0 40.0 30.0 41.0 58-59 36.250972913315856 38.0 34.5 40.0 29.0 41.0 60-61 36.08543485189037 38.0 34.0 40.0 29.0 41.0 62-63 35.85565304151333 38.0 34.0 40.0 29.0 41.0 64-65 35.64027146489404 37.0 34.0 40.0 29.0 41.0 66-67 35.384293592223244 37.0 34.0 39.5 28.0 41.0 68-69 35.105762091094675 36.0 33.5 39.0 28.0 40.5 70-71 34.821194335134415 36.0 33.0 39.0 28.0 40.0 72-73 34.51512494188782 35.5 33.0 38.5 28.0 40.0 74-75 34.19713692202753 35.0 33.0 37.5 28.0 40.0 76-77 33.15728726768507 34.5 31.5 36.0 26.0 39.0 78-79 33.52749834788824 35.0 32.0 36.5 27.0 39.0 80-81 33.45874110277083 35.0 32.0 36.0 28.0 39.0 82-83 33.26974503526476 35.0 32.0 36.0 27.5 37.5 84-85 33.041916538556386 34.5 32.0 35.5 27.0 37.0 86-87 32.87175414422203 34.0 32.0 35.0 27.0 37.0 88-89 32.68411870109314 34.0 32.0 35.0 27.0 36.0 90-91 32.58697754304572 34.0 32.0 35.0 27.0 36.0 92-93 32.55397290877052 34.0 32.0 35.0 27.0 36.0 94-95 32.54333823689896 34.0 32.0 35.0 27.0 35.0 96-97 32.45154121744331 34.0 32.0 35.0 27.0 35.0 98-99 32.601534451358674 34.0 32.0 35.0 28.0 35.0 100-101 32.16423433927352 33.5 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 0.0 19 15.0 20 84.0 21 592.0 22 2837.0 23 9586.0 24 24565.0 25 50415.0 26 88987.0 27 136332.0 28 191596.0 29 247954.0 30 310752.0 31 378858.0 32 461005.0 33 566109.0 34 716918.0 35 932359.0 36 1295562.0 37 1827037.0 38 1785257.0 39 675162.0 40 19038.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.67193257335159 22.889566252440716 16.235297457891008 24.203203716316686 2 13.721024899706471 23.271009741359613 40.50458417830701 22.503381180626903 3 16.291999309126208 28.325979683413976 31.95498045833242 23.427040549127394 4 11.948793866653746 20.239947997242677 39.55620720164946 28.255050934454122 5 12.38768800361855 38.724165141878586 36.32942746869337 12.558719385809496 6 28.269607015640226 40.0733338456251 19.13811951684509 12.518939621889588 7 24.961590976587548 33.303305629458954 24.59128015641975 17.143823237533745 8 23.91428350699304 37.45859875035786 21.58948703238332 17.03763071026578 9 25.25268173936015 16.636119470142184 21.529987121725767 36.58121166877189 10-11 23.58750205611076 27.305834992880897 29.66515458301045 19.441508367997894 12-13 24.62416051701181 24.810788587953724 29.601462862870697 20.963588032163766 14-15 21.733664245007958 26.005493454752653 27.100403938968153 25.160438361271236 16-17 21.32004522569281 29.07457887919821 27.692394102966322 21.91298179214266 18-19 21.419011842732367 28.38175419090847 29.230546951887483 20.968687014471683 20-21 22.30309765159432 27.569463879883223 28.953831787805523 21.173606680716937 22-23 22.007388452982852 27.456956422428963 28.878469671434537 21.657185453153648 24-25 21.747634014210323 27.66466190793753 28.901164777171275 21.686539300680877 26-27 21.796706890748585 27.72042291348708 28.78118673963363 21.70168345613071 28-29 21.796499905972375 27.76080278525744 28.802405335350517 21.64029197341967 30-31 22.039163529350013 27.657834948836136 28.65458331825132 21.64841820356253 32-33 21.83279081112886 27.831345175914464 28.64314203869696 21.692721974259715 34-35 21.907581406642475 27.80179897222897 28.676335617545202 21.614284003583357 36-37 21.940246563303035 27.774383143255466 28.634271713618958 21.651098579822538 38-39 21.82471505656205 27.844373272923516 28.662400767280488 21.668510903233944 40-41 21.99433148752433 27.71087881519364 28.56784941263343 21.726940284648595 42-43 21.898663386131563 27.873265168544805 28.35264918647046 21.87542225885317 44-45 21.9935214019143 27.89881628893366 28.2053719119312 21.902290397220842 46-47 22.059169275509618 27.898428879919802 27.97746140914358 22.064940435427005 48-49 21.978041659755203 28.049806527096738 27.946503390804594 22.025648422343462 50-51 22.01427549255513 28.084710057960066 27.826423842034377 22.07459060745043 52-53 22.15056084466459 27.99401186828037 27.740284888124283 22.115142398930757 54-55 22.09808042914124 27.883259216774352 27.83397846119417 22.184681892890236 56-57 22.121054338935608 27.991166555322778 27.79818988525739 22.089589220484225 58-59 22.081383524812505 28.067074607355526 27.756333604198126 22.095208263633843 60-61 22.16686085606804 28.014421506040737 27.776737124209056 22.04198051368217 62-63 22.13204911655974 28.09020266681264 27.723878935260466 22.05386928136715 64-65 22.098815908221294 28.053568643649868 27.702750485546474 22.14486496258236 66-67 22.145440482160257 28.063494053419873 27.629037713712616 22.16202775070725 68-69 22.100154713254405 28.03744323793081 27.686624357653045 22.175777691161734 70-71 22.09726005213362 27.818116245174835 27.757596449795603 22.327027252895945 72-73 22.14945108406645 27.877565843360063 27.69889071530497 22.274092357268522 74-75 21.97989899622455 27.987743706942027 27.72757965439511 22.304777642438317 76-77 22.11190551494221 27.941564615782582 27.658381394472965 22.28814847480224 78-79 22.068294612012558 27.93834713121689 27.637567423516966 22.355790833253586 80-81 22.119513512784327 27.92398846028582 27.63487249720725 22.321625529722603 82-83 22.129640129378423 27.842766096569026 27.77774991514744 22.249843858905116 84-85 22.129322337059328 27.85957330609029 27.75768926357609 22.25341509327429 86-87 22.041052096856884 27.890070096704854 27.801766933897866 22.267110872540396 88-89 22.069700658074186 27.846416071631907 27.756193261286594 22.327690009007316 90-91 22.116162930187116 27.825337010908136 27.81295421596466 22.245545842940086 92-93 22.106871153016368 27.756674429968015 27.818255089098326 22.31819932791729 94-95 21.90830579344961 27.8094664152785 27.91482021192585 22.367407579346043 96-97 21.85262134058171 27.873255198033657 27.979393572315804 22.29472988906883 98-99 22.010309014063807 28.51412199134628 28.041941429474566 21.433627565115348 100-101 22.582390848576807 31.211268252529788 25.27090365027368 20.935437248619724 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1843.0 1 1717.5 2 2519.5 3 3604.0 4 4613.0 5 6747.5 6 8535.0 7 10313.0 8 11848.0 9 12104.5 10 11271.5 11 10209.0 12 11183.5 13 15069.0 14 24488.5 15 37773.0 16 48123.5 17 52681.5 18 52587.5 19 50135.0 20 47005.5 21 44705.5 22 44933.0 23 49903.5 24 60004.0 25 75549.0 26 95312.5 27 115874.5 28 137350.5 29 160095.5 30 181343.5 31 203286.5 32 227414.0 33 250792.0 34 272669.0 35 293136.0 36 315549.0 37 336340.5 38 350783.0 39 361140.5 40 371931.5 41 382586.0 42 388260.5 43 393278.5 44 398769.5 45 402333.5 46 402606.5 47 399453.5 48 395549.5 49 388111.0 50 377639.0 51 365550.0 52 348970.5 53 329446.0 54 309173.5 55 286184.5 56 261704.0 57 236038.0 58 208437.0 59 179953.5 60 150877.5 61 123027.5 62 97291.5 63 74901.0 64 56133.5 65 41800.0 66 31454.5 67 23892.0 68 18305.0 69 13286.0 70 9373.0 71 6644.5 72 4565.0 73 3100.0 74 2081.5 75 1389.5 76 951.0 77 643.5 78 451.0 79 323.5 80 236.5 81 174.5 82 135.0 83 96.0 84 63.5 85 42.5 86 27.5 87 19.0 88 13.5 89 7.0 90 4.0 91 4.0 92 3.5 93 2.0 94 1.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0031478168501401552 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 8.6925007789818E-4 14-15 0.0 16-17 0.0 18-19 4.114793268157065E-4 20-21 0.0 22-23 0.0017079268175993832 24-25 2.212639492126168E-4 26-27 0.005554479950618151 28-29 3.760060737857837E-4 30-31 0.0 32-33 5.166303837148184E-6 34-35 2.278958151491464E-4 36-37 0.020389648151718943 38-39 0.008260214748853922 40-41 0.012896389011076898 42-43 0.0018863851424067116 44-45 0.0029971339706062897 46-47 5.393607108515276E-6 48-49 7.022560601976073E-4 50-51 2.7460889788849373E-5 52-53 2.215036766010881E-5 54-55 0.004466671594894326 56-57 0.009328804882074555 58-59 0.011838625545809254 60-61 0.006362193229455026 62-63 0.007114659021413732 64-65 9.19099299078483E-4 66-67 1.0052879922429613E-4 68-69 0.0 70-71 9.675417557762544E-5 72-73 0.0 74-75 1.547009312315376E-4 76-77 5.6343625498195034E-5 78-79 0.0 80-81 0.0021455031410422933 82-83 0.0020321214572942186 84-85 0.009376573423687404 86-87 0.01082827098829636 88-89 0.04191725513438781 90-91 5.119118072804236E-4 92-93 5.854713382859036E-4 94-95 1.4417212652516989E-5 96-97 0.009458668398877976 98-99 1.1652627710274968E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 276.0 20-21 971.0 22-23 1875.0 24-25 3837.0 26-27 5057.0 28-29 8008.0 30-31 17766.0 32-33 22468.0 34-35 32246.0 36-37 49573.0 38-39 60679.0 40-41 64963.0 42-43 73449.0 44-45 87143.0 46-47 87279.0 48-49 82207.0 50-51 75884.0 52-53 73039.0 54-55 78153.0 56-57 82290.0 58-59 84199.0 60-61 86171.0 62-63 81994.0 64-65 83815.0 66-67 90510.0 68-69 94427.0 70-71 96963.0 72-73 92761.0 74-75 93423.0 76-77 94191.0 78-79 104778.0 80-81 107665.0 82-83 105116.0 84-85 104405.0 86-87 110003.0 88-89 122476.0 90-91 137172.0 92-93 146482.0 94-95 181106.0 96-97 236177.0 98-99 822499.0 100-101 5737527.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.67293194411441 #Duplication Level Percentage of deduplicated Percentage of total 1 90.42293451135238 77.46797914578207 2 6.598003982677995 11.305406923499357 3 1.6501358049349824 4.241159175442236 4 0.6124248823324714 2.098729410598084 5 0.26261915029237 1.1249676295109687 6 0.15075054570682528 0.7749144745727372 7 0.07943121543307204 0.476357357982511 8 0.05379078919787005 0.3686731697735461 9 0.03912017045452573 0.30163857308934655 >10 0.12826168771520585 1.6476163380653754 >50 0.0021625571933546516 0.1226771948951587 >100 3.25695562629743E-4 0.04747346865972785 >500 3.900714637731885E-5 0.022407138128921433 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.0573966340785326E-5 0.0 0.0 0.0 3 0.0 2.0573966340785326E-5 0.0 0.0 0.0 4 0.0 9.258284853353397E-5 0.0 1.0286983170392663E-5 0.0 5 0.0 1.1315681487431929E-4 0.0 2.0573966340785326E-5 0.0 6 5.1434915851963315E-5 1.1315681487431929E-4 0.0 2.0573966340785326E-5 0.0 7 5.1434915851963315E-5 1.1315681487431929E-4 0.0 2.0573966340785326E-5 0.0 8 5.1434915851963315E-5 1.2344379804471196E-4 0.0 2.0573966340785326E-5 1.0286983170392663E-5 9 5.1434915851963315E-5 1.8516569706706793E-4 0.0 3.086094951117799E-5 1.0286983170392663E-5 10-11 5.1434915851963315E-5 1.954526802374606E-4 0.0 5.1434915851963315E-5 1.0286983170392663E-5 12-13 5.1434915851963315E-5 2.0059617182265695E-4 0.0 5.1434915851963315E-5 1.0286983170392663E-5 14-15 5.1434915851963315E-5 2.777485456006019E-4 0.0 6.172189902235598E-5 2.0573966340785326E-5 16-17 1.4916125597069362E-4 2.931790203561909E-4 0.0 7.715237377794497E-5 3.086094951117799E-5 18-19 1.5430474755588996E-4 3.291834614525652E-4 0.0 1.1830030645951562E-4 3.086094951117799E-5 20-21 1.5430474755588996E-4 3.6004441096374324E-4 0.0 1.285872896299083E-4 3.086094951117799E-5 22-23 1.645917307262826E-4 4.3205329315649187E-4 0.0 1.3373078121510463E-4 3.086094951117799E-5 24-25 1.9030918865226427E-4 4.834882090084552E-4 0.0 1.3887427280030094E-4 3.086094951117799E-5 26-27 1.954526802374606E-4 5.040621753492406E-4 0.0 2.0059617182265695E-4 3.086094951117799E-5 28-29 1.954526802374606E-4 5.092056669344369E-4 0.0 3.6518790254893956E-4 3.086094951117799E-5 30-31 2.2117013816344225E-4 5.400666164456149E-4 0.0 8.84680552653769E-4 3.086094951117799E-5 32-33 2.571745792598166E-4 5.452101080308112E-4 0.0 0.001815652529574305 4.114793268157065E-5 34-35 2.623180708450129E-4 6.326494649791488E-4 0.0 0.003111812409043781 5.1434915851963315E-5 36-37 2.6746156243020926E-4 7.200888219274865E-4 0.0 0.005374948706530167 5.1434915851963315E-5 38-39 2.6746156243020926E-4 7.406627882682717E-4 0.0 0.008898240442389654 6.172189902235598E-5 40-41 2.6746156243020926E-4 7.715237377794497E-4 0.0 0.013295925747732518 6.172189902235598E-5 42-43 2.6746156243020926E-4 7.869542125350387E-4 0.0 0.01731813616735605 6.172189902235598E-5 44-45 2.726050540154056E-4 8.84680552653769E-4 0.0 0.022302179513411294 6.172189902235598E-5 46-47 2.777485456006019E-4 9.669764180169104E-4 0.0 0.027646267270430284 6.172189902235598E-5 48-49 2.8289203718579825E-4 9.669764180169104E-4 0.0 0.03310351184232359 6.172189902235598E-5 50-51 3.137529866969762E-4 9.92693875942892E-4 0.0 0.03846817356568337 6.172189902235598E-5 52-53 3.343269530377616E-4 9.978373675280884E-4 0.0 0.044141444784154917 6.172189902235598E-5 54-55 3.394704446229579E-4 9.978373675280884E-4 0.0 0.04992787281750079 6.172189902235598E-5 56-57 3.4975742779335057E-4 9.978373675280884E-4 0.0 0.056064058278640014 6.172189902235598E-5 58-59 3.4975742779335057E-4 0.0010132678422836773 0.0 0.06189163424466746 6.172189902235598E-5 60-61 3.6518790254893956E-4 0.0010441287917948554 0.0 0.06784265400873962 6.172189902235598E-5 62-63 4.011923436453139E-4 0.0010749897413060332 0.0 0.07341819888709245 6.172189902235598E-5 64-65 4.011923436453139E-4 0.0012138640141063342 0.0 0.07956981482298725 6.172189902235598E-5 66-67 4.063358352305102E-4 0.001239581472032316 0.0 0.08574200472522285 6.172189902235598E-5 68-69 4.114793268157065E-4 0.001255011946787905 0.0 0.09185761622002128 6.172189902235598E-5 70-71 4.269098015712955E-4 0.001270442421543494 0.0 0.09745373506471489 7.200888219274864E-5 72-73 4.732012258380625E-4 0.0012807294047138865 0.0 0.10194400321859129 8.22958653631413E-5 74-75 4.732012258380625E-4 0.0013218773373954574 0.0 0.10652685422100122 8.22958653631413E-5 76-77 4.732012258380625E-4 0.001393886219588206 0.0 0.11052334718269877 8.22958653631413E-5 78-79 4.834882090084552E-4 0.0014298906606845802 0.0 0.11422151763245494 8.22958653631413E-5 80-81 4.834882090084552E-4 0.0014298906606845802 0.0 0.11636121013189661 8.22958653631413E-5 82-83 4.937751921788478E-4 0.0014350341522697766 0.0 0.11771394841880325 9.258284853353397E-5 84-85 5.040621753492406E-4 0.0014658951017809546 0.0 0.11907183019729509 9.258284853353397E-5 86-87 5.040621753492406E-4 0.0014916125597069362 0.0 0.11929300033545852 9.258284853353397E-5 88-89 5.143491585196332E-4 0.0015121865260477214 0.0 0.11933929175972528 9.258284853353397E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10955 0.0 49.826294 1 GTATCAA 19785 0.0 35.61247 1 TCAACGC 25060 0.0 27.471613 4 ATCAACG 25290 0.0 27.238556 3 CAACGCA 25750 0.0 26.751965 5 TATCAAC 26600 0.0 26.249092 2 AACGCAG 26590 0.0 25.98666 6 ACGCAGA 30645 0.0 22.479155 7 CGCAGAG 31040 0.0 22.193096 8 GTACATG 27725 0.0 19.74914 1 TACATGG 27995 0.0 19.331242 2 AGAGTAC 32810 0.0 18.816055 10-11 GCAGAGT 36580 0.0 18.681135 9 ACATGGG 28595 0.0 18.375744 3 GAGTACT 20055 0.0 17.598074 12-13 CAGAGTA 36065 0.0 16.770655 10-11 AGTACTT 22750 0.0 16.110407 12-13 CATGGGG 20780 0.0 15.870473 4 GTACTTT 22820 0.0 15.558831 14-15 TATACTG 5480 0.0 14.328659 5 >>END_MODULE