##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139673_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6663531 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.640702954634712 31.0 31.0 34.0 30.0 34.0 2 31.88571989835419 31.0 31.0 34.0 30.0 34.0 3 31.895910891687905 31.0 31.0 34.0 30.0 34.0 4 35.64724783301826 37.0 35.0 37.0 33.0 37.0 5 35.47858140076185 37.0 35.0 37.0 33.0 37.0 6 35.47000651756554 37.0 35.0 37.0 33.0 37.0 7 35.334745047333016 37.0 35.0 37.0 32.0 37.0 8 35.308700147114195 37.0 35.0 37.0 32.0 37.0 9 36.82906855239362 39.0 37.0 39.0 33.0 39.0 10-11 36.75265621184924 39.0 35.0 39.0 32.0 39.0 12-13 36.684949090804864 39.0 35.0 39.0 32.0 39.0 14-15 37.741373079828094 39.0 37.0 41.0 32.0 41.0 16-17 37.78983072188004 39.5 37.0 41.0 32.0 41.0 18-19 37.82983443762774 40.0 37.0 41.0 32.0 41.0 20-21 37.80737425545114 40.0 37.0 41.0 32.0 41.0 22-23 37.73523833454022 39.0 37.0 41.0 32.0 41.0 24-25 37.640706446250064 39.0 36.5 41.0 32.0 41.0 26-27 37.4723750821248 39.0 36.0 41.0 32.0 41.0 28-29 37.33443768240102 39.0 36.0 41.0 31.5 41.0 30-31 37.18212122065749 39.0 36.0 40.0 31.0 41.0 32-33 37.397545491906754 39.0 36.0 41.0 32.0 41.0 34-35 37.399652669510715 39.0 36.0 41.0 31.5 41.0 36-37 37.28776454642437 39.0 36.0 41.0 31.0 41.0 38-39 37.17294037498543 39.0 36.0 41.0 31.0 41.0 40-41 37.15985637884316 39.0 36.0 40.5 31.0 41.0 42-43 37.09141533938544 39.0 36.0 40.0 31.0 41.0 44-45 37.062735637324444 39.0 35.5 40.0 31.0 41.0 46-47 37.07613377819999 39.0 36.0 40.5 31.0 41.0 48-49 36.99524463828435 39.0 35.0 40.0 31.0 41.0 50-51 36.91645923646114 39.0 35.0 40.0 30.5 41.0 52-53 36.79078697016867 39.0 35.0 40.0 30.0 41.0 54-55 36.690162805354106 39.0 35.0 40.0 30.0 41.0 56-57 36.51922234032999 38.0 35.0 40.0 30.0 41.0 58-59 36.38066346650568 38.0 35.0 40.0 30.0 41.0 60-61 36.222372318855705 38.0 34.5 40.0 29.5 41.0 62-63 35.99135092166949 38.0 34.0 40.0 29.0 41.0 64-65 35.78722348628915 37.0 34.0 40.0 29.0 41.0 66-67 35.53718275038137 37.0 34.0 40.0 29.0 41.0 68-69 35.26453280535872 36.5 34.0 39.0 28.5 41.0 70-71 34.98849985429071 36.0 33.5 39.0 28.0 40.0 72-73 34.68717357614706 35.5 33.0 39.0 28.0 40.0 74-75 34.36406228076522 35.0 33.0 38.0 28.0 40.0 76-77 33.29579791568452 34.5 31.5 36.5 26.5 39.0 78-79 33.66726650335133 35.0 32.0 37.0 28.0 39.0 80-81 33.59362045752357 35.0 32.0 36.0 28.0 39.0 82-83 33.3998923413116 35.0 32.0 36.0 28.0 37.5 84-85 33.16969374382307 35.0 32.0 35.5 28.0 37.0 86-87 32.99726210006551 34.5 32.0 35.0 27.0 37.0 88-89 32.804096615338565 34.0 32.0 35.0 27.0 36.0 90-91 32.70277984264399 34.0 32.0 35.0 27.0 36.0 92-93 32.6567330867386 34.0 32.0 35.0 27.0 36.0 94-95 32.64220458553129 34.0 32.0 35.0 27.5 35.5 96-97 32.551261367455545 34.0 32.0 35.0 27.0 35.0 98-99 32.68990192965648 34.0 32.0 35.0 28.5 35.0 100-101 32.252214466233355 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 18.0 20 83.0 21 387.0 22 1833.0 23 5953.0 24 15312.0 25 32389.0 26 56721.0 27 88488.0 28 123979.0 29 163759.0 30 205265.0 31 251669.0 32 307184.0 33 380210.0 34 482067.0 35 624603.0 36 865136.0 37 1239765.0 38 1279814.0 39 522666.0 40 16229.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.80021898299866 22.833944946005353 16.2092590249824 24.15657704601359 2 13.51204074141108 23.180907220963086 40.90840055984322 22.39865147778261 3 16.104284650285262 28.419752230461597 32.06580715239413 23.410155966859012 4 11.71375956681225 20.271189554006728 39.957418972013485 28.057631907167536 5 12.247050400155715 38.84518583315663 36.47662177905378 12.431141987633884 6 27.964363038154993 40.259421018676136 19.39120565357916 12.385010289589708 7 24.818958597176184 33.43901303978326 24.73409368096284 17.007934682077718 8 23.79142529688839 37.513849639177785 21.780329377922904 16.914395686010916 9 25.21850652454382 16.71378132704718 21.687135544203215 36.380576604205785 10-11 23.370552339292786 27.398026661840397 29.893753026736125 19.337667972130692 12-13 24.471591597630514 24.917537426966625 29.775623914089905 20.835247061312955 14-15 21.599494322154424 26.11665646937037 27.334426747620743 24.94942246085446 16-17 21.133502642968118 29.23371257671046 27.89937497101762 21.733409809303804 18-19 21.24171390723448 28.51705023764165 29.450553721809385 20.790682133314483 20-21 22.125625803570127 27.680616901735238 29.190372001099167 21.003385293595468 22-23 21.795193157475097 27.623179017089498 29.068197701226715 21.513430124208686 24-25 21.575581344721964 27.827857764629965 29.076672074524545 21.519888816123522 26-27 21.65936096008445 27.882537215844614 28.938250995369042 21.519850828701898 28-29 21.60162910140179 27.971378010888227 28.95080008566308 21.4761928020469 30-31 21.825882971049353 27.82109110156502 28.875816947245575 21.47720898014005 32-33 21.657596871712283 27.982048771544594 28.859934765021094 21.50041959172203 34-35 21.68853603663021 28.012686595539027 28.90348921440575 21.395288153425017 36-37 21.707878433530535 27.973643943178615 28.851490901295428 21.46698672199542 38-39 21.61380290051767 28.007345263506288 28.868273927987797 21.51057790798825 40-41 21.790811324463647 27.923042350609727 28.73145359287562 21.554692732051002 42-43 21.684373342069478 28.03009939815306 28.56909074721832 21.71643651255915 44-45 21.81130611803645 28.10845783814574 28.383900136943375 21.69633590687444 46-47 21.860161771119664 28.114398867859595 28.147138768772834 21.87830059224791 48-49 21.79489664322277 28.20552209750661 28.136003160415747 21.863578098854873 50-51 21.82312511922599 28.287615643673792 28.0186490585163 21.870610178583924 52-53 21.95755157129123 28.175818290378007 27.946996214653698 21.919633923677065 54-55 21.894206660624892 28.10687134916409 28.01144084001146 21.987481150199557 56-57 21.948980988979677 28.203079690259457 27.95951273695481 21.888426583806055 58-59 21.8787075308173 28.266269312195064 27.976474527815398 21.878548629172233 60-61 21.978144396015992 28.235016586231033 27.933322734238512 21.85351628351446 62-63 21.966798885961754 28.239627556029482 27.89742279145403 21.89615076655473 64-65 21.899580802877257 28.196856970770106 27.936036628405652 21.967525597946988 66-67 21.940485079834747 28.233281110428766 27.83114148336311 21.99509232637338 68-69 21.92427591139201 28.216413439954362 27.87340041096611 21.98591023768752 70-71 21.921653100094243 27.98456329448606 27.95884259908208 22.13494100633762 72-73 21.951020964151812 28.06365449386041 27.872163509837712 22.11316103215006 74-75 21.81792448805578 28.154190314004175 27.923144146699215 22.104741051240836 76-77 21.929237463430837 28.065480118088924 27.893449356249267 22.111833062230968 78-79 21.92591705261901 28.08373371175345 27.8560019586921 22.134347276935443 80-81 21.91207348531562 28.07836684233358 27.876337830441884 22.133221841908917 82-83 21.927896626372664 28.007711733344127 27.95762236947518 22.106769270808023 84-85 22.014141179762973 28.02743496268436 27.899659120706232 22.058764736846438 86-87 21.869499934081237 28.042170908766238 27.964410627576473 22.123918529576052 88-89 21.899312000599764 28.02232782510126 27.935657259033746 22.142702915265225 90-91 21.910768780977634 28.00191249994089 28.051297845651675 22.0360208734298 92-93 21.942459808434208 27.92539168828952 28.006675939620468 22.1254725636558 94-95 21.746983975683225 27.935201979766877 28.10058614677499 22.217227897774904 96-97 21.726894667555317 28.00056183179197 28.184192697288335 22.08835080336438 98-99 21.83983881281605 28.643171202306206 28.259091644403277 21.257898340474465 100-101 22.388534240855478 31.353947811061424 25.50351445501923 20.754003493063873 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1137.0 1 1131.0 2 1764.0 3 2522.5 4 3208.0 5 4721.5 6 6025.5 7 7275.5 8 8212.5 9 8206.5 10 7645.5 11 7022.5 12 7776.0 13 10387.0 14 16630.0 15 25526.0 16 32661.5 17 36138.5 18 36436.5 19 35248.5 20 33739.5 21 32445.5 22 32922.5 23 36967.0 24 44636.0 25 55914.0 26 69918.0 27 84626.5 28 100866.0 29 117666.0 30 131911.0 31 147033.5 32 164153.5 33 180339.5 34 195779.0 35 209712.5 36 224329.0 37 238289.0 38 248041.5 39 254922.5 40 262038.0 41 269781.5 42 273938.0 43 276656.5 44 279106.0 45 279793.5 46 278852.5 47 276354.5 48 273137.5 49 266511.0 50 258192.5 51 248543.0 52 235049.5 53 220609.0 54 205528.5 55 188834.5 56 171428.0 57 152769.5 58 133812.5 59 114949.0 60 96584.0 61 79205.5 62 62716.5 63 48190.5 64 35603.5 65 26322.5 66 19673.5 67 14567.5 68 11146.5 69 8194.0 70 5734.5 71 4166.5 72 2976.0 73 2017.0 74 1386.0 75 962.0 76 643.0 77 414.5 78 284.5 79 209.5 80 153.5 81 104.5 82 76.5 83 58.5 84 44.5 85 33.0 86 22.5 87 16.5 88 11.0 89 6.5 90 5.0 91 3.0 92 2.0 93 2.0 94 1.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.003556672881089621 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 8.028776334949143E-4 14-15 0.0 16-17 0.0 18-19 4.7272234495494955E-4 20-21 0.0 22-23 0.0012683078169563149 24-25 1.9517494506200633E-4 26-27 0.004858886155546388 28-29 3.6068535627973496E-4 30-31 0.0 32-33 0.0 34-35 1.5118185279559056E-4 36-37 0.021045981485000812 38-39 0.010132846427282051 40-41 0.013602923959655065 42-43 0.001952576412954415 44-45 0.003040661698011798 46-47 0.0 48-49 7.417637898674109E-4 50-51 3.2209627989264854E-5 52-53 8.124629212234326E-6 54-55 0.004164305459019176 56-57 0.009287181504304881 58-59 0.011548306835084074 60-61 0.006051429544583442 62-63 0.006901189823204841 64-65 8.370065986321241E-4 66-67 1.3084786362512263E-4 68-69 0.0 70-71 1.250744304534797E-4 72-73 0.0 74-75 1.9224820451620324E-4 76-77 3.706958962852193E-5 78-79 0.0 80-81 0.002180395653262248 82-83 0.0021252508882824194 84-85 0.009112017261491969 86-87 0.010408712460163312 88-89 0.040691724985749314 90-91 4.0092022499643026E-4 92-93 6.185658665709392E-4 94-95 0.0 96-97 0.009726455286449616 98-99 5.76920924564243E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 168.0 20-21 683.0 22-23 1305.0 24-25 2691.0 26-27 3444.0 28-29 5829.0 30-31 13092.0 32-33 16478.0 34-35 23809.0 36-37 36963.0 38-39 45088.0 40-41 48228.0 42-43 53859.0 44-45 63723.0 46-47 64174.0 48-49 60383.0 50-51 56085.0 52-53 53908.0 54-55 57823.0 56-57 61112.0 58-59 62618.0 60-61 63041.0 62-63 59544.0 64-65 61421.0 66-67 65556.0 68-69 68405.0 70-71 69512.0 72-73 66539.0 74-75 66331.0 76-77 67501.0 78-79 73943.0 80-81 75998.0 82-83 72915.0 84-85 73084.0 86-87 77165.0 88-89 84427.0 90-91 93435.0 92-93 98903.0 94-95 121193.0 96-97 157114.0 98-99 549988.0 100-101 3866053.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.98709693451349 #Duplication Level Percentage of deduplicated Percentage of total 1 90.89824837631546 79.06974742688037 2 6.501296857251739 11.310578798436097 3 1.4892065606364326 3.8862526633678445 4 0.5281769339327318 1.8377831260232267 5 0.23097474643941435 1.0045911328975006 6 0.11674675537412688 0.6093276795911465 7 0.0704843263850327 0.4291858852133108 8 0.044610731840829795 0.3104446443966279 9 0.02857982634790325 0.22374685124069604 >10 0.08999124178839854 1.1860530866174133 >50 0.001363422893705311 0.07504220555238428 >100 2.9442122208092267E-4 0.04598046576553789 >500 2.579957215628956E-5 0.011266034017821239 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.5007058569998398E-5 0.0 0.0 0.0 3 0.0 3.0014117139996797E-5 0.0 0.0 0.0 4 0.0 3.0014117139996797E-5 0.0 3.0014117139996797E-5 0.0 5 0.0 4.5021175709995193E-5 0.0 3.0014117139996797E-5 0.0 6 1.5007058569998398E-5 4.5021175709995193E-5 0.0 3.0014117139996797E-5 1.5007058569998398E-5 7 1.5007058569998398E-5 4.5021175709995193E-5 0.0 3.0014117139996797E-5 1.5007058569998398E-5 8 3.0014117139996797E-5 4.5021175709995193E-5 0.0 3.0014117139996797E-5 1.5007058569998398E-5 9 3.0014117139996797E-5 1.50070585699984E-4 0.0 3.0014117139996797E-5 1.5007058569998398E-5 10-11 3.0014117139996797E-5 1.50070585699984E-4 0.0 3.0014117139996797E-5 1.5007058569998398E-5 12-13 6.0028234279993594E-5 1.50070585699984E-4 0.0 3.0014117139996797E-5 1.5007058569998398E-5 14-15 7.5035292849992E-5 2.2510587854997598E-4 0.0 3.0014117139996797E-5 1.5007058569998398E-5 16-17 9.004235141999039E-5 2.2510587854997598E-4 0.0 3.0014117139996797E-5 2.2510587854997597E-5 18-19 9.004235141999039E-5 2.401129371199744E-4 0.0 3.0014117139996797E-5 3.0014117139996797E-5 20-21 9.004235141999039E-5 2.551199956899728E-4 0.0 3.0014117139996797E-5 3.0014117139996797E-5 22-23 9.004235141999039E-5 3.00141171399968E-4 0.0 3.0014117139996797E-5 3.0014117139996797E-5 24-25 9.754588070498958E-5 3.7517646424995994E-4 0.0 6.0028234279993594E-5 3.0014117139996797E-5 26-27 1.050494099899888E-4 4.201976399599552E-4 0.0 1.1255293927498799E-4 3.0014117139996797E-5 28-29 1.050494099899888E-4 4.201976399599552E-4 0.0 3.676729349649608E-4 3.7517646424996E-5 30-31 1.050494099899888E-4 5.402541085199424E-4 0.0 0.0010129764534748918 4.5021175709995193E-5 32-33 1.050494099899888E-4 5.402541085199424E-4 0.0 0.002678759954744714 7.5035292849992E-5 34-35 1.200564685599872E-4 5.777717549449383E-4 0.0 0.004757237566689492 7.5035292849992E-5 36-37 1.425670564149848E-4 6.00282342799936E-4 0.0 0.007833684573539165 7.5035292849992E-5 38-39 1.50070585699984E-4 6.00282342799936E-4 0.0 0.013071148014468605 7.5035292849992E-5 40-41 1.50070585699984E-4 6.302964599399327E-4 0.0 0.01902895026675797 7.5035292849992E-5 42-43 1.50070585699984E-4 6.377999892249319E-4 0.0 0.024844185462632347 7.5035292849992E-5 44-45 1.50070585699984E-4 7.353458699299216E-4 0.0 0.031882495931961595 9.004235141999039E-5 46-47 1.50070585699984E-4 8.25388221349912E-4 0.0 0.03910089110413083 9.004235141999039E-5 48-49 1.50070585699984E-4 8.403952799199104E-4 0.0 0.045914095694910104 1.2005646855998719E-4 50-51 1.50070585699984E-4 9.679552777648967E-4 0.0 0.05330507204063431 1.2005646855998719E-4 52-53 1.5757411498498318E-4 9.754588070498959E-4 0.0 0.05957802252289364 1.350635271299856E-4 54-55 1.6507764426998238E-4 9.754588070498959E-4 0.0 0.06576093065373298 1.350635271299856E-4 56-57 1.6507764426998238E-4 9.904658656198944E-4 0.0 0.0722214693681173 1.350635271299856E-4 58-59 1.6507764426998238E-4 9.904658656198944E-4 0.0 0.07900465984175657 1.350635271299856E-4 60-61 1.6507764426998238E-4 0.001005472924189893 0.0 0.08518006444331092 1.350635271299856E-4 62-63 1.6507764426998238E-4 0.0010429905706148888 0.0 0.0919107302119552 1.50070585699984E-4 64-65 1.6507764426998238E-4 0.0012305788027398687 0.0 0.09852133951203948 1.50070585699984E-4 66-67 1.6507764426998238E-4 0.0012605929198798655 0.0 0.10499688528499379 1.50070585699984E-4 68-69 1.8008470283998077E-4 0.00131311762487486 0.0 0.11131485694296311 1.5757411498498318E-4 70-71 1.8008470283998077E-4 0.0013356282127298575 0.0 0.11748275801523246 1.6507764426998238E-4 72-73 1.8008470283998077E-4 0.0013356282127298575 0.0 0.12333551085753183 1.950917614099792E-4 74-75 1.8008470283998077E-4 0.001388152917724852 0.0 0.12802521666065633 1.950917614099792E-4 76-77 1.8008470283998077E-4 0.0015082093862848391 0.0 0.1320996330624109 1.950917614099792E-4 78-79 1.8008470283998077E-4 0.0015157129155698383 0.0 0.1357838659413455 1.950917614099792E-4 80-81 1.8008470283998077E-4 0.0015157129155698383 0.0 0.13820750590040026 1.950917614099792E-4 82-83 1.8008470283998077E-4 0.0015307199741398368 0.0 0.1397607364623951 1.950917614099792E-4 84-85 1.8008470283998077E-4 0.0015307199741398368 0.0 0.1413589882000999 1.950917614099792E-4 86-87 1.8008470283998077E-4 0.0015532305619948344 0.0 0.1416291152543599 1.950917614099792E-4 88-89 1.8008470283998077E-4 0.0015757411498498318 0.0 0.14165162584221488 2.100988199799776E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7510 0.0 50.36909 1 GTATCAA 13850 0.0 35.89845 1 ATCAACG 17655 0.0 27.587326 3 TCAACGC 17725 0.0 27.57354 4 CAACGCA 17955 0.0 27.196842 5 AACGCAG 18440 0.0 26.481525 6 TATCAAC 18665 0.0 26.208467 2 ACGCAGA 20880 0.0 23.346899 7 CGCAGAG 21110 0.0 23.092527 8 AGAGTAC 22485 0.0 19.448572 10-11 GTACATG 19080 0.0 19.317223 1 GCAGAGT 24775 0.0 19.301954 9 TACATGG 19440 0.0 18.634106 2 GAGTACT 13470 0.0 18.220373 12-13 ACATGGG 19775 0.0 18.040527 3 CAGAGTA 24715 0.0 17.1051 10-11 AGTACTT 15240 0.0 16.975845 12-13 GTACTTT 15540 0.0 16.024895 14-15 CATGGGG 13780 0.0 16.00471 4 ACTTTTT 18540 0.0 13.797111 16-17 >>END_MODULE