##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139672_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5287920 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.96773041195782 31.0 30.0 31.0 26.0 34.0 2 30.65127101015144 31.0 30.0 33.0 27.0 34.0 3 30.840889234330323 31.0 30.0 34.0 27.0 34.0 4 34.71829074569963 35.0 35.0 37.0 32.0 37.0 5 34.424100213316386 35.0 35.0 37.0 30.0 37.0 6 34.556132657075 35.0 35.0 37.0 30.0 37.0 7 34.37156519009365 35.0 35.0 37.0 30.0 37.0 8 34.36399813159049 35.0 35.0 37.0 30.0 37.0 9 35.71170781706228 37.0 35.0 39.0 30.0 39.0 10-11 35.707445271486705 37.0 35.0 39.0 30.0 39.0 12-13 35.58406774308234 37.0 35.0 39.0 30.0 39.0 14-15 36.45037008880618 38.0 35.0 40.0 30.0 41.0 16-17 36.28389517995734 38.0 35.0 40.0 29.5 41.0 18-19 36.51440434045901 38.0 35.0 40.0 30.0 41.0 20-21 36.4656733783081 38.0 35.0 40.0 30.0 41.0 22-23 36.28106256210267 38.0 34.0 40.0 29.5 41.0 24-25 36.33849860148463 38.0 35.0 40.0 30.0 41.0 26-27 36.10742902256689 38.0 34.0 40.0 29.0 41.0 28-29 35.797231552042135 38.0 34.0 40.0 27.5 41.0 30-31 35.84615092746637 38.0 34.0 40.0 27.0 41.0 32-33 35.91507455706626 38.0 34.0 40.0 28.5 41.0 34-35 35.600475451702614 38.0 34.0 40.0 27.0 41.0 36-37 35.47044316144491 38.0 34.0 40.0 26.5 41.0 38-39 35.59482845906015 38.0 34.0 40.0 27.0 41.0 40-41 35.568430992290544 38.0 34.0 40.0 27.0 41.0 42-43 35.55558161030988 38.0 34.0 40.0 27.0 41.0 44-45 35.707568137556194 38.0 34.0 40.0 27.5 41.0 46-47 35.44786370158617 38.0 33.5 40.0 26.5 41.0 48-49 35.286352499898605 38.0 33.0 40.0 26.5 41.0 50-51 35.21213442384321 38.0 33.0 40.0 26.5 41.0 52-53 35.315380694460245 38.0 33.0 40.0 27.0 41.0 54-55 35.33528261776041 38.0 33.0 40.0 27.0 41.0 56-57 35.25451986963708 37.5 33.0 40.0 27.5 41.0 58-59 34.81882390378068 37.0 33.0 40.0 26.0 41.0 60-61 34.32412418082838 36.5 32.0 40.0 25.5 41.0 62-63 34.214206806745835 36.0 32.0 39.0 25.5 41.0 64-65 34.16397925477834 36.0 32.0 39.0 25.5 40.5 66-67 33.844003627009734 36.0 31.5 39.0 25.5 40.0 68-69 33.575182353922784 35.0 31.0 39.0 25.5 40.0 70-71 33.668408979891375 35.0 31.0 38.0 26.0 40.0 72-73 33.483406065844775 35.0 31.0 38.0 26.0 40.0 74-75 33.00570040763037 35.0 31.0 37.0 25.5 39.5 76-77 32.599508417958724 34.0 31.0 36.5 24.5 39.0 78-79 32.54913834544192 34.0 31.0 36.0 25.5 39.0 80-81 32.40272054779577 34.0 31.0 36.0 25.5 38.5 82-83 32.47424787512414 34.0 31.0 35.5 26.0 37.0 84-85 32.094817417279 34.0 31.0 35.0 25.5 37.0 86-87 31.911182985366572 34.0 31.0 35.0 25.0 36.5 88-89 31.96189405757281 34.0 31.0 35.0 26.0 36.0 90-91 31.787989250803868 34.0 31.0 35.0 25.0 36.0 92-93 31.654192078223865 34.0 31.0 35.0 25.0 35.5 94-95 31.88408966884893 34.0 31.0 35.0 25.5 35.0 96-97 32.085266999528706 34.0 31.0 35.0 26.5 35.0 98-99 32.64393166261993 34.0 32.0 35.0 28.0 35.0 100 32.47364041327875 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 3.0 19 32.0 20 202.0 21 1008.0 22 4411.0 23 13466.0 24 30501.0 25 58271.0 26 94488.0 27 136853.0 28 181889.0 29 227381.0 30 272919.0 31 317834.0 32 366503.0 33 417858.0 34 478297.0 35 540280.0 36 613563.0 37 689868.0 38 612106.0 39 224738.0 40 5447.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.83045507496331 21.812867819482896 14.986932480067777 26.369744625486014 2 14.381746866276826 23.267752721440946 38.589900220136016 23.760600192146214 3 16.82397177415161 27.48415775657683 30.99128409493413 24.700586374337426 4 12.535271490008057 20.97858681812156 38.19746588019352 28.28867581167686 5 12.823815947256378 39.191315146846996 35.22934069148941 12.755528214407216 6 28.01580511612532 39.720717531394264 19.325374042059735 12.938103310420681 7 24.630478524637287 33.84956655925203 24.13264572837713 17.387309187733553 8 23.78530688815262 36.48094146658799 21.544028653988715 18.18972299127067 9 24.43793106513167 17.550212096667895 22.21291589375707 35.798940944443366 10-11 23.29222117244452 27.371483759501896 29.59270915517942 19.743585912874163 12-13 24.23635380262939 24.770732159336752 29.396898969727225 21.59601506830663 14-15 21.45193195055901 26.25475612339067 27.045199246584666 25.24811267946565 16-17 20.866786940800917 28.998018124328656 27.846194723066915 22.289000211803504 18-19 21.084774353621082 28.35666008562913 29.41285987685139 21.145705683898395 20-21 21.769928934515335 27.472659498595785 29.242310305124374 21.515101261764507 22-23 21.406681606155182 27.428325830168816 29.28432333613433 21.880669227541677 24-25 21.327251674343966 27.57904420339985 29.1443011556685 21.949402966587684 26-27 21.50884927093461 27.661248689000406 28.98889499541884 21.84100704464614 28-29 21.39033627063901 27.539202511083605 29.147808582947455 21.922652635329932 30-31 21.780094735096938 27.598057316508285 28.953042705195397 21.66880524319938 32-33 21.611830178662764 27.75740211050518 28.93027794362623 21.700489767205823 34-35 21.593681695906827 27.64726132493603 28.961550411334418 21.797506567822726 36-37 21.66420375126554 27.63732606885697 28.90284078564945 21.795629394228044 38-39 21.61203351943173 27.711483700876947 28.867381850134777 21.809100929556546 40-41 21.817096523317552 27.599945343447246 28.76248906095868 21.820469072276527 42-43 21.687144076784552 27.770767954392067 28.613573134736864 21.928514834086517 44-45 21.839599366386338 27.879236038705002 28.32056560960653 21.96059898530213 46-47 21.783157170561545 27.78346041247806 28.185527232041522 22.247855184918876 48-49 21.771646299734197 27.93577898211293 28.155390180634036 22.137184537518834 50-51 21.774640464054112 28.033730137084607 28.077637805473316 22.11399159338797 52-53 21.936351234022002 27.965285824705948 27.96679685355441 22.13156608771764 54-55 21.902708906951762 27.892651583554418 28.07744311386656 22.127196395627262 56-57 21.912071855345832 27.96058432246072 28.093324545249864 22.034019276943585 58-59 21.795594540871388 27.943272277244528 28.115481582597035 22.145651599287046 60-61 21.842813514405584 27.868570690020373 28.11295640536412 22.175659390209926 62-63 21.798073074946338 28.056083982116625 28.08203252579904 22.063810417138 64-65 21.72697168057213 28.016371253734203 28.182326313087263 22.074330752606404 66-67 21.782189891803664 27.996176407042057 28.08930186393252 22.13233183722176 68-69 21.66060097711419 27.957018296555404 28.193835338291372 22.188545388039035 70-71 21.753911737886668 27.804911887012445 28.17760728235916 22.26356909274173 72-73 21.747178304906964 27.870699168515017 28.109305857544005 22.27281666903401 74-75 21.475020847355218 27.96817632885549 28.328585427933128 22.228217395856166 76-77 21.719417141746973 27.898327764860426 28.22789105339941 22.15436403999319 78-79 21.67550706383684 27.957938052224613 28.07249771128354 22.294057172655005 80-81 21.73071360303906 28.022944723195582 28.00580989247096 22.240531781294393 82-83 21.744018143608375 28.032571495063635 28.114647197299863 22.108763164028122 84-85 21.696409683991124 28.02277802846074 28.219552795875558 22.061259491672583 86-87 21.630297954694903 28.00304028639858 28.191945655472395 22.174716103434122 88-89 21.636573659196632 28.04282373427499 28.120412712339615 22.200189894188767 90-91 21.572832160547286 27.97803382767049 28.247870248515966 22.201263763266255 92-93 21.544954014029617 27.994674980514418 28.319875292283708 22.140495713172253 94-95 21.44148597129603 28.099743997384202 28.308139243217255 22.150630788102514 96-97 21.428854177698874 28.297551400046352 28.30860108614613 21.964993336108645 98-99 22.50949697163224 30.32299619431334 28.231406212860357 18.936100621194065 100 21.676969067908423 31.15672040634844 22.13857492791297 25.027735597830166 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 385.0 1 386.5 2 1070.5 3 1838.5 4 2231.0 5 3514.0 6 4927.0 7 6150.0 8 7091.0 9 7125.5 10 6345.5 11 5242.0 12 5162.0 13 6563.5 14 10721.5 15 17072.5 16 22429.0 17 25557.0 18 26676.5 19 26579.5 20 26032.0 21 25377.0 22 25587.0 23 28061.0 24 33128.5 25 40800.5 26 50978.0 27 62059.5 28 73551.0 29 86335.0 30 99201.0 31 112126.5 32 125185.0 33 137109.5 34 148911.0 35 159851.5 36 171008.0 37 181805.0 38 189456.0 39 195161.5 40 200905.0 41 205850.5 42 209548.0 43 212046.5 44 212988.0 45 214441.0 46 214464.5 47 212767.5 48 210112.0 49 205205.5 50 199999.0 51 193637.5 52 184740.0 53 174406.0 54 162427.0 55 149691.0 56 137551.0 57 124786.5 58 110894.5 59 95823.0 60 79725.5 61 64635.0 62 51480.5 63 39972.5 64 30067.0 65 22054.5 66 16266.5 67 12617.5 68 9875.0 69 7437.0 70 5429.5 71 3940.0 72 2900.5 73 2098.0 74 1493.0 75 1039.0 76 694.0 77 482.5 78 334.5 79 228.5 80 167.5 81 125.0 82 93.0 83 64.0 84 41.0 85 31.5 86 27.0 87 20.5 88 12.5 89 6.0 90 5.0 91 5.0 92 4.0 93 2.5 94 1.5 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.005295087671523018 3 1.8911027398296494E-5 4 1.7019924658466846E-4 5 1.8911027398296494E-5 6 2.2693232877955794E-4 7 0.0 8 0.0 9 1.8911027398296494E-5 10-11 5.295087671523019E-4 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.039045648325141215 22-23 0.0 24-25 1.2301075057185806E-4 26-27 0.0013161902862694934 28-29 0.0 30-31 9.490021432264403E-6 32-33 0.0 34-35 9.533435569896384E-6 36-37 0.0 38-39 7.688554347074991E-5 40-41 0.002106590788168381 42-43 1.652289640931219E-4 44-45 8.807723864938839E-4 46-47 0.0021603300274036386 48-49 0.006420735277557155 50-51 0.005504419498415278 52-53 0.007685509359902834 54-55 0.009286876376366278 56-57 0.010516003979745973 58-59 0.012684898078438553 60-61 0.014457743355764614 62-63 0.01209461480219869 64-65 0.03615391454613564 66-67 0.004928491204024028 68-69 0.004020046201586986 70-71 0.003278928017790619 72-73 0.0011035355640558143 74-75 2.868261309637082E-4 76-77 7.797935440892485E-5 78-79 0.0 80-81 0.0 82-83 3.4597024240751E-5 84-85 1.168078698601471E-4 86-87 1.0651879648435895E-4 88-89 0.0 90-91 3.670243767803741E-5 92-93 0.0033545250360424387 94-95 1.2732646135444542E-5 96-97 1.0486049359931546E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 322.0 20-21 983.0 22-23 1859.0 24-25 3377.0 26-27 4135.0 28-29 6152.0 30-31 9868.0 32-33 12592.0 34-35 17129.0 36-37 22239.0 38-39 27820.0 40-41 29229.0 42-43 33464.0 44-45 39981.0 46-47 39173.0 48-49 35359.0 50-51 32595.0 52-53 31674.0 54-55 33649.0 56-57 36939.0 58-59 38752.0 60-61 38487.0 62-63 36209.0 64-65 38365.0 66-67 42705.0 68-69 43317.0 70-71 44522.0 72-73 43834.0 74-75 43589.0 76-77 45782.0 78-79 52255.0 80-81 52071.0 82-83 55706.0 84-85 55528.0 86-87 59004.0 88-89 74267.0 90-91 76149.0 92-93 79784.0 94-95 97389.0 96-97 223968.0 98-99 493639.0 100-101 3134059.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 91.37348399800614 #Duplication Level Percentage of deduplicated Percentage of total 1 93.8444732757009 85.74896477158572 2 4.5666461940955205 8.345407458814853 3 0.9520527933006635 2.6097714202174567 4 0.31944581903742597 1.1675550973618483 5 0.12728825273111233 0.5815385562030226 6 0.06816938314796857 0.3737324424134913 7 0.03551924280063969 0.22718618745658814 8 0.0244825928655198 0.1789647845941818 9 0.015617876983816564 0.1284353849397232 >10 0.04596352408574359 0.6055643336389995 >50 2.3155743794766456E-4 0.014529665140451151 >100 1.0948781272512477E-4 0.018349897633681094 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.8911027398296494E-5 0.0 0.0 0.0 3 0.0 1.8911027398296494E-5 0.0 1.8911027398296494E-5 0.0 4 1.8911027398296494E-5 7.564410959318598E-5 0.0 1.8911027398296494E-5 0.0 5 1.8911027398296494E-5 7.564410959318598E-5 0.0 1.8911027398296494E-5 0.0 6 1.7019924658466846E-4 7.564410959318598E-5 0.0 1.8911027398296494E-5 0.0 7 1.7019924658466846E-4 7.564410959318598E-5 0.0 5.6733082194889486E-5 0.0 8 1.7019924658466846E-4 7.564410959318598E-5 0.0 5.6733082194889486E-5 0.0 9 1.7019924658466846E-4 9.455513699148247E-5 0.0 7.564410959318598E-5 0.0 10-11 1.7019924658466846E-4 9.455513699148247E-5 0.0 1.0401065069063072E-4 0.0 12-13 1.796547602838167E-4 9.455513699148247E-5 0.0 1.1346616438977897E-4 0.0 14-15 1.8911027398296493E-4 9.455513699148247E-5 0.0 1.1346616438977897E-4 3.782205479659299E-5 16-17 3.214874657710404E-4 9.455513699148247E-5 0.0 1.3237719178807548E-4 9.455513699148247E-5 18-19 3.214874657710404E-4 1.1346616438977897E-4 0.0 1.607437328855202E-4 1.1346616438977897E-4 20-21 3.214874657710404E-4 1.1346616438977897E-4 0.0 1.8911027398296493E-4 1.2292167808892722E-4 22-23 3.214874657710404E-4 1.3237719178807548E-4 0.0 2.0802130138126144E-4 1.5128821918637195E-4 24-25 3.214874657710404E-4 1.607437328855202E-4 0.0 2.174768150804097E-4 1.5128821918637195E-4 26-27 3.214874657710404E-4 1.7019924658466846E-4 0.0 2.4584335617785445E-4 1.5128821918637195E-4 28-29 3.214874657710404E-4 1.796547602838167E-4 0.0 4.254981164616711E-4 1.5128821918637195E-4 30-31 3.214874657710404E-4 1.8911027398296493E-4 0.0 0.0010022844521097142 1.607437328855202E-4 32-33 3.214874657710404E-4 1.8911027398296493E-4 0.0 0.002222045719299838 1.7019924658466846E-4 34-35 3.214874657710404E-4 2.458433561778544E-4 0.0 0.004028048835837153 1.7019924658466846E-4 36-37 3.403984931693369E-4 3.025764383727439E-4 0.0 0.007110546301759482 1.7019924658466846E-4 38-39 3.593095205676334E-4 3.403984931693369E-4 0.0 0.012991875822629692 1.796547602838167E-4 40-41 3.593095205676334E-4 4.160426027625229E-4 0.0 0.018977215994190534 1.8911027398296493E-4 42-43 4.160426027625229E-4 4.254981164616711E-4 0.0 0.024924734110954777 1.8911027398296493E-4 44-45 4.160426027625229E-4 4.633201712582641E-4 0.0 0.03274444394015038 1.8911027398296493E-4 46-47 4.160426027625229E-4 5.105977397540053E-4 0.0 0.040819452639222986 1.8911027398296493E-4 48-49 4.160426027625229E-4 5.105977397540053E-4 0.0 0.047183013358749755 2.0802130138126144E-4 50-51 4.349536301608194E-4 5.200532534531536E-4 0.0 0.05371677332486119 2.0802130138126144E-4 52-53 4.349536301608194E-4 5.295087671523019E-4 0.0 0.06207544743490824 2.174768150804097E-4 54-55 4.349536301608194E-4 5.389642808514501E-4 0.0 0.0703773884627604 2.363878424787062E-4 56-57 4.349536301608194E-4 5.484197945505984E-4 0.0 0.07664639404529569 2.4584335617785445E-4 58-59 4.349536301608194E-4 5.484197945505984E-4 0.0 0.08268846729905142 2.552988698770027E-4 60-61 4.4440914385996766E-4 5.767863356480431E-4 0.0 0.08894801736788757 2.6475438357615095E-4 62-63 4.727756849574124E-4 5.862418493471914E-4 0.0 0.09651242832720616 2.6475438357615095E-4 64-65 4.727756849574124E-4 6.051528767454878E-4 0.0 0.10365134117006308 2.6475438357615095E-4 66-67 4.727756849574124E-4 6.051528767454878E-4 0.0 0.10891806230048867 2.6475438357615095E-4 68-69 4.727756849574124E-4 6.240639041437844E-4 0.0 0.11600969757484986 2.6475438357615095E-4 70-71 4.727756849574124E-4 6.429749315420808E-4 0.0 0.1208603761025129 2.742098972752992E-4 72-73 5.105977397540053E-4 6.52430445241229E-4 0.0 0.125266645486316 3.025764383727439E-4 74-75 5.105977397540053E-4 6.713414726395256E-4 0.0 0.12877464106869999 3.025764383727439E-4 76-77 5.484197945505984E-4 6.807969863386738E-4 0.0 0.1322448145962874 3.025764383727439E-4 78-79 5.673308219488948E-4 6.807969863386738E-4 0.0 0.13378606332924856 3.025764383727439E-4 80-81 5.673308219488948E-4 6.807969863386738E-4 0.0 0.1343061165827017 3.025764383727439E-4 82-83 5.673308219488948E-4 6.997080137369703E-4 0.0 0.13488290291834976 3.214874657710404E-4 84-85 5.673308219488948E-4 6.997080137369703E-4 0.0 0.13519493487042164 3.214874657710404E-4 86-87 5.767863356480431E-4 7.186190411352668E-4 0.0 0.13525166795261653 3.214874657710404E-4 88 5.862418493471914E-4 7.564410959318597E-4 0.0 0.13525166795261653 3.214874657710404E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5510 0.0 49.592636 1 GTATCAA 10180 0.0 36.924023 1 ATCAACG 12915 0.0 27.845112 3 TCAACGC 12985 0.0 27.761393 4 CAACGCA 13190 0.0 27.2975 5 TATCAAC 13755 0.0 26.829842 2 AACGCAG 13565 0.0 26.00697 6 ACGCAGA 15715 0.0 22.394484 7 CGCAGAG 15980 0.0 21.755514 8 GTACATG 13555 0.0 19.843536 1 TACATGG 13550 0.0 19.188108 2 AACGCCG 380 0.0 19.130262 7 AGAGTAC 16910 0.0 18.207085 10-11 ACATGGG 13935 0.0 18.196802 3 GCAGAGT 18855 0.0 18.166096 9 GAGTACT 11250 0.0 16.933338 12-13 TATACCG 500 0.0 16.249472 5 CATGGGG 10195 0.0 16.232273 4 GTGGTAT 2805 0.0 16.159983 1 AGTACTT 12720 0.0 16.153017 12-13 >>END_MODULE