##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139666_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 21000161 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.568051787793436 31.0 31.0 34.0 28.0 34.0 2 31.59427272962336 31.0 31.0 34.0 28.0 34.0 3 31.68059216307913 33.0 31.0 34.0 28.0 34.0 4 35.23196988823086 37.0 35.0 37.0 32.0 37.0 5 35.067223341763906 37.0 35.0 37.0 32.0 37.0 6 35.11470616820509 37.0 35.0 37.0 32.0 37.0 7 34.97694684340753 37.0 35.0 37.0 32.0 37.0 8 34.99784844506668 37.0 35.0 37.0 32.0 37.0 9 36.50828948406634 39.0 37.0 39.0 32.0 39.0 10-11 36.446997763493336 39.0 36.0 39.0 32.0 39.0 12-13 36.4317492613509 39.0 35.0 39.0 32.0 39.0 14-15 37.59714258857349 40.0 37.0 41.0 31.0 41.0 16-17 37.62376017021965 40.0 37.0 41.0 31.5 41.0 18-19 37.68962533192008 40.0 37.0 41.0 31.5 41.0 20-21 37.71649377605879 40.0 37.0 41.0 31.0 41.0 22-23 37.67962741033428 40.0 37.0 41.0 31.0 41.0 24-25 37.6738297362071 40.0 37.0 41.0 31.0 41.0 26-27 37.60049755470874 40.0 37.0 41.0 31.0 41.0 28-29 37.54167445344054 40.0 37.0 41.0 31.0 41.0 30-31 37.43856900070679 40.0 36.0 41.0 31.0 41.0 32-33 37.356935674561626 40.0 36.0 41.0 31.0 41.0 34-35 37.27346471095 40.0 36.0 41.0 30.0 41.0 36-37 37.24351198126705 40.0 36.0 41.0 30.0 41.0 38-39 37.18429980029538 40.0 36.0 41.0 30.0 41.0 40-41 37.170122866582886 40.0 36.0 41.0 30.0 41.0 42-43 37.14057725883063 40.0 36.0 41.0 30.0 41.0 44-45 37.0760539807133 40.0 35.0 41.0 30.0 41.0 46-47 37.00892610221092 39.5 35.0 41.0 30.0 41.0 48-49 36.953365271985774 39.0 35.0 41.0 30.0 41.0 50-51 36.88237299459822 39.0 35.0 41.0 30.0 41.0 52-53 37.106738489707105 39.0 35.5 41.0 30.0 41.0 54-55 37.10598469435365 39.0 35.0 41.0 30.0 41.0 56-57 37.03263348755449 39.0 35.0 41.0 30.0 41.0 58-59 36.90636910215824 39.0 35.0 41.0 30.0 41.0 60-61 36.79176996864001 39.0 35.0 41.0 30.0 41.0 62-63 36.638565406175076 39.0 35.0 41.0 30.0 41.0 64-65 36.450270641009425 38.0 35.0 40.5 30.0 41.0 66-67 36.236709526509735 38.0 34.5 40.0 29.5 41.0 68-69 35.988142463442486 37.0 34.0 40.0 29.0 41.0 70-71 35.746094559591754 37.0 34.0 39.5 29.0 41.0 72-73 35.47337643525815 36.0 34.0 39.0 29.0 41.0 74-75 35.2047226916405 36.0 34.0 39.0 29.0 41.0 76-77 34.909724897482505 35.5 34.0 38.5 29.0 40.0 78-79 34.63028595271969 35.0 34.0 37.0 29.0 39.0 80-81 34.365756659311984 35.0 34.0 37.0 29.0 39.0 82-83 34.094407743098145 35.0 33.0 36.5 29.0 39.0 84-85 33.8693524123036 35.0 33.0 36.0 29.0 37.0 86-87 33.64371954477364 35.0 33.0 36.0 29.0 37.0 88-89 33.498733926177636 35.0 33.0 35.0 29.0 37.0 90-91 33.39344644175948 35.0 33.0 35.0 29.0 36.0 92-93 33.320048007972304 35.0 33.0 35.0 29.0 36.0 94-95 33.37039675705297 35.0 33.0 35.0 29.0 36.0 96-97 33.552093733579426 35.0 33.5 35.0 30.0 36.0 98-99 33.649402821368994 35.0 34.0 35.0 30.0 36.0 100 32.85320122459728 34.0 32.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 7.0 14 13.0 15 19.0 16 70.0 17 309.0 18 2153.0 19 11048.0 20 33804.0 21 75932.0 22 125616.0 23 172772.0 24 216377.0 25 254244.0 26 290933.0 27 328037.0 28 369498.0 29 420142.0 30 484037.0 31 567332.0 32 681094.0 33 836722.0 34 1075824.0 35 1422471.0 36 2062655.0 37 3470305.0 38 4945622.0 39 2996249.0 40 156876.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.94788897094646 21.713814479803272 14.4616605558405 23.876635993409764 2 14.15116620031481 22.917698442267483 41.0854564276808 21.8456789297369 3 16.4707546765951 28.959054171060878 31.882922230929562 22.68726892141446 4 11.583469307789493 19.978518404016686 40.46577882681516 27.97223346137866 5 11.645080742500026 39.587142821892236 36.66493303477645 12.102843400831285 6 26.989017722915786 41.0143921217559 19.685752745688323 12.310837409639998 7 24.06007346604767 34.23180092392584 25.190432079716985 16.517693530309508 8 23.612554624817918 36.99085764952212 22.379520639693105 17.017067085966854 9 25.644953963390332 15.964332615588189 21.860387220472965 36.530326200548515 10-11 22.920383530460605 27.41375711269302 30.492662649253244 19.17319670759313 12-13 24.242951944207263 25.426874270868403 30.150851758080048 20.179322026844282 14-15 21.58854154823993 26.481447191602136 27.863489733727846 24.066521526430083 16-17 20.614687152873362 29.422648417403725 28.517818574128356 21.444845855594558 18-19 20.669311154706552 28.558323227853812 30.382309504528486 20.39005611291115 20-21 21.85384616796135 27.655034436421577 30.06263487817893 20.428484517438143 22-23 21.4631938127002 27.633423986278615 29.892101451233145 21.01128074978804 24-25 21.151784657783505 27.857761562584592 30.026446231947684 20.96400754768422 26-27 21.066241314994333 27.998725342235296 29.918133695846933 21.016899646923438 28-29 21.047176067439633 27.806014030142055 30.054259878896044 21.092550023522268 30-31 21.335997899572696 27.810008909126623 29.8618599876001 20.99213320370059 32-33 21.0504971800701 28.000509990146206 29.821905437654117 21.127087392129578 34-35 21.178520609232493 28.064576534173796 29.763378702250403 20.99352415434331 36-37 21.24329289392079 27.941154601534674 29.659886111877277 21.155666392667264 38-39 21.133727220687778 28.0716211439683 29.686673278047216 21.1079783572967 40-41 21.32159093252577 27.95260482269256 29.622840964252966 21.1029632805287 42-43 21.315018584421907 28.06222691856826 29.261964049938033 21.360790447071796 44-45 21.325946105589928 28.276246231007544 29.043427931116295 21.354379732286237 46-47 21.544159537592684 28.19787228402738 28.62197615408148 21.63599202429846 48-49 21.51912245909022 28.31272672780259 28.598745296780148 21.569405516327045 50-51 21.474429536658686 28.380543212397658 28.420657439242536 21.724369811701116 52-53 21.591475171085193 28.340560501408678 28.44162786460017 21.62633646290596 54-55 21.637696265187117 28.29586930476634 28.457092016017192 21.60934241402935 56-57 21.654181203068518 28.395074949779875 28.320333032996952 21.630410814154654 58-59 21.512788906603834 28.468206077903684 28.451074796333003 21.56793021915947 60-61 21.675698718058726 28.620576272931647 28.216368347891745 21.48735666111788 62-63 21.545232332973058 28.64603939030914 28.29544251802244 21.51328575869536 64-65 21.499159178828844 28.497159138889106 28.337873514649857 21.66580816763219 66-67 21.649943997403817 28.574868708672135 28.14691870820659 21.628268585717453 68-69 21.608355071959934 28.516708913566536 28.267791266837598 21.607144747635935 70-71 21.639375084068714 28.163955516410184 28.4094433969371 21.787226002584003 72-73 21.681816200207777 28.29753818750233 28.22524999811887 21.795395614171024 74-75 21.496810622189496 28.437319380484716 28.25439417858587 21.811475818739922 76-77 21.5810962405237 28.376681539247855 28.29066998989454 21.751552230333903 78-79 21.563067342787214 28.381680639039423 28.222921459309102 21.832330558864257 80-81 21.567968013827358 28.443292437001038 28.14903545066762 21.839704098503987 82-83 21.723773337933846 28.287639044215474 28.26273338088906 21.725854236961617 84-85 21.691712656822286 28.332155016078346 28.161295875274394 21.814836451824966 86-87 21.508022493823237 28.48397186883541 28.31820322422397 21.689802413117388 88-89 21.68020767881067 28.34768840363956 28.232312717031444 21.739791200518326 90-91 21.66467253802645 28.386004151744164 28.286456048683313 21.662867261546072 92-93 21.737865470538075 28.42113319915825 28.175770201807588 21.66523112849609 94-95 21.500960033772813 28.42210319182343 28.316640623573587 21.760296150830168 96-97 21.5644394290772 28.55098226575803 28.396440110306287 21.48813819485848 98-99 22.46368445196469 30.484562108274304 28.650632660598337 18.401120779162667 100 21.697082103823902 31.409860590407845 22.32496096115424 24.568096344614013 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 4701.0 1 4829.0 2 8082.5 3 11373.0 4 14225.5 5 24433.5 6 33431.0 7 38190.0 8 39509.0 9 35508.0 10 29361.5 11 22942.0 12 23311.5 13 32731.0 14 58249.5 15 96965.0 16 129378.0 17 146835.5 18 151052.0 19 144563.0 20 130306.0 21 115432.0 22 107978.0 23 113826.0 24 133506.0 25 167095.0 26 214075.0 27 265447.5 28 315718.5 29 372978.5 30 432946.0 31 489654.0 32 555555.5 33 623774.5 34 688501.5 35 751338.5 36 817091.0 37 870989.0 38 894677.0 39 908732.0 40 921364.0 41 921022.5 42 909039.0 43 909852.5 44 913617.0 45 909395.5 46 899463.0 47 880197.0 48 859322.0 49 830624.5 50 797856.5 51 755325.0 52 702213.5 53 648633.5 54 591768.0 55 537296.5 56 485180.5 57 430672.0 58 380377.5 59 332476.0 60 280205.5 61 223979.5 62 173457.5 63 135683.0 64 105240.5 65 80564.0 66 60945.0 67 46716.0 68 36911.5 69 28388.5 70 21160.0 71 15683.5 72 11830.0 73 8960.0 74 6603.5 75 4828.5 76 3540.5 77 2565.0 78 1892.0 79 1386.5 80 1000.5 81 736.0 82 577.0 83 421.0 84 313.5 85 242.5 86 193.5 87 160.0 88 113.5 89 74.0 90 52.5 91 41.0 92 29.0 93 15.5 94 7.5 95 4.5 96 2.5 97 3.0 98 4.5 99 5.0 100 6.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.013247517483318342 3 0.0 4 0.12789901944085094 5 0.036299721702133615 6 0.004590440997095212 7 0.005109484636808261 8 4.333300111365813E-4 9 6.428522143234998E-4 10-11 0.004735677978849781 12-13 3.809494603398517E-5 14-15 5.4761484923853676E-5 16-17 3.809494603398517E-4 18-19 1.4285604762744436E-5 20-21 9.150965115829891E-4 22-23 0.030287498363821334 24-25 0.0010224908570085954 26-27 0.004524117397568815 28-29 5.848175235106232E-4 30-31 0.0026797803983653386 32-33 0.0033900069303323174 34-35 0.019730225284753933 36-37 0.004322141992139845 38-39 0.0016507298768474448 40-41 0.0010063368984924825 42-43 0.0011232079298780038 44-45 0.030463448831155784 46-47 0.003918292085626206 48-49 0.005502645129804134 50-51 0.019445936605461393 52-53 0.004256093280460907 54-55 9.729298658041834E-4 56-57 0.0012834876594948676 58-59 0.0039701473182809765 60-61 0.0029131996113390844 62-63 7.738344548431955E-4 64-65 1.2323607514274867E-4 66-67 2.830057588841875E-6 68-69 2.889891334649388E-4 70-71 0.01335077541315179 72-73 0.004280308190387288 74-75 0.002991311438570786 76-77 2.990665743428214E-6 78-79 0.0 80-81 7.962237922938766E-5 82-83 3.1011907052724804E-6 84-85 1.5694153836669748E-5 86-87 0.005712765880718656 88-89 0.0 90-91 6.529024599308047E-5 92-93 8.618525308001234E-5 94-95 2.459114111889086E-4 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 12828.0 20-21 24997.0 22-23 26360.0 24-25 28815.0 26-27 34842.0 28-29 49473.0 30-31 78282.0 32-33 90364.0 34-35 110932.0 36-37 144091.0 38-39 182094.0 40-41 181378.0 42-43 206365.0 44-45 244774.0 46-47 232616.0 48-49 203269.0 50-51 180997.0 52-53 167596.0 54-55 172859.0 56-57 181161.0 58-59 187801.0 60-61 187428.0 62-63 174341.0 64-65 181934.0 66-67 191070.0 68-69 199543.0 70-71 199960.0 72-73 181081.0 74-75 178303.0 76-77 186606.0 78-79 199221.0 80-81 206611.0 82-83 195319.0 84-85 191573.0 86-87 197768.0 88-89 213634.0 90-91 231652.0 92-93 237281.0 94-95 263199.0 96-97 643284.0 98-99 1257944.0 100-101 1.2740515E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.98241034335805 #Duplication Level Percentage of deduplicated Percentage of total 1 89.21717710060854 74.03456399838745 2 7.226556367770404 11.993541317594614 3 1.8451351273205816 4.593412808227821 4 0.7563315429530721 2.5104885781182786 5 0.35255817864184186 1.4628063724982125 6 0.18785476186308653 0.9353184560325871 7 0.11766931127244824 0.6835138150981438 8 0.07130039750615225 0.4733343074800055 9 0.04725054967084918 0.3528868051562065 >10 0.1714071735688413 2.215524865522203 >50 0.004353054725022716 0.2454542141124188 >100 0.002179924560676224 0.33585870323858275 >500 1.6701140789845308E-4 0.0879921478435317 >1k 5.949813063412334E-5 0.07530361068981133 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 4.761868254248146E-6 0.0 2 0.0 2.380934127124073E-5 0.0 2.380934127124073E-5 0.0 3 0.0 2.380934127124073E-5 0.0 2.380934127124073E-5 4.761868254248146E-6 4 0.0 5.714241905097775E-5 0.0 3.3333077779737025E-5 4.761868254248146E-6 5 4.761868254248146E-6 6.19042873052259E-5 0.0 3.3333077779737025E-5 4.761868254248146E-6 6 1.4285604762744438E-5 6.19042873052259E-5 0.0 3.3333077779737025E-5 9.523736508496293E-6 7 1.4285604762744438E-5 6.19042873052259E-5 0.0 3.3333077779737025E-5 9.523736508496293E-6 8 1.4285604762744438E-5 6.666615555947405E-5 0.0 3.3333077779737025E-5 9.523736508496293E-6 9 1.4285604762744438E-5 1.238085746104518E-4 0.0 6.666615555947405E-5 9.523736508496293E-6 10-11 1.4285604762744438E-5 1.238085746104518E-4 0.0 9.285643095783885E-5 9.523736508496293E-6 12-13 1.4285604762744438E-5 1.2618950873757585E-4 0.0 1.0238016746633513E-4 1.1904670635620365E-5 14-15 1.9047473016992585E-5 2.142840714411666E-4 0.0 1.1666577222907957E-4 1.9047473016992585E-5 16-17 3.3333077779737025E-5 2.2380780794966287E-4 0.0 1.4285604762744438E-4 1.9047473016992585E-5 18-19 3.3333077779737025E-5 2.3333154445815915E-4 0.0 1.4761791588169254E-4 2.1428407144116658E-5 20-21 3.3333077779737025E-5 2.4999808334802767E-4 0.0 1.7142725715293326E-4 2.380934127124073E-5 22-23 3.5714011906861094E-5 2.7856929287351656E-4 0.0 1.928556642970499E-4 2.380934127124073E-5 24-25 3.809494603398517E-5 3.047595682718813E-4 0.0 2.452362150937795E-4 2.380934127124073E-5 26-27 3.809494603398517E-5 3.166642389075017E-4 0.0 3.095214365261295E-4 2.380934127124073E-5 28-29 3.809494603398517E-5 3.190451730346258E-4 0.0 4.88091496060435E-4 2.380934127124073E-5 30-31 3.809494603398517E-5 3.6904478970423133E-4 0.0 0.0012095145365790291 2.6190275398364803E-5 32-33 3.809494603398517E-5 3.714257238313554E-4 0.0 0.0027214077073028156 2.8571209525488876E-5 34-35 3.809494603398517E-5 4.1190160399246466E-4 0.0 0.004511870170900118 3.3333077779737025E-5 36-37 3.809494603398517E-5 4.4761561589932574E-4 0.0 0.007361848321067634 3.3333077779737025E-5 38-39 3.809494603398517E-5 4.595202865349461E-4 0.0 0.012014193605468073 3.3333077779737025E-5 40-41 3.809494603398517E-5 5.380911127300405E-4 0.0 0.01731653390657338 3.3333077779737025E-5 42-43 6.19042873052259E-5 5.666623222555294E-4 0.0 0.021899832101287223 3.3333077779737025E-5 44-45 6.19042873052259E-5 6.357094119421275E-4 0.0 0.027202172402392533 3.3333077779737025E-5 46-47 6.19042873052259E-5 6.809471603574849E-4 0.0 0.032768796391608616 3.809494603398517E-5 48-49 6.19042873052259E-5 6.833280944846089E-4 0.0 0.038361610656223066 3.809494603398517E-5 50-51 6.19042873052259E-5 7.976129325865645E-4 0.0 0.04407347162719372 4.2856814288233316E-5 52-53 6.19042873052259E-5 7.999938667136885E-4 0.0 0.04965914308942679 4.999961666960554E-5 54-55 6.666615555947405E-5 8.118985373493088E-4 0.0 0.05489005536671838 6.19042873052259E-5 56-57 7.618989206797034E-5 8.357078786205496E-4 0.0 0.059909064506695926 7.380895794084627E-5 58-59 7.618989206797034E-5 8.428506810019219E-4 0.0 0.06501140634112282 8.333269444934255E-5 60-61 7.618989206797034E-5 8.547553516375422E-4 0.0 0.07018755713349054 9.047549683071477E-5 62-63 7.618989206797034E-5 8.595172198917903E-4 0.0 0.07511370984251026 9.523736508496292E-5 64-65 7.857082619509441E-5 9.285643095783884E-4 0.0 0.07977319792929206 9.523736508496292E-5 66-67 8.095176032221848E-5 9.476117825953811E-4 0.0 0.08431840117797193 9.999923333921106E-5 68-69 8.095176032221848E-5 9.595164532310014E-4 0.0 0.08879455733696517 9.999923333921106E-5 70-71 8.095176032221848E-5 9.690401897394978E-4 0.0 0.09302547728086466 9.999923333921106E-5 72-73 8.333269444934255E-5 9.738020579937458E-4 0.0 0.09626354769375339 1.142848381019555E-4 74-75 8.571362857646663E-5 9.928495310107385E-4 0.0 0.09887781336533563 1.142848381019555E-4 76-77 8.571362857646663E-5 0.0010523728841888402 0.0 0.10118731946864598 1.142848381019555E-4 78-79 8.571362857646663E-5 0.001076182225460081 0.0 0.10262064181317468 1.142848381019555E-4 80-81 8.571362857646663E-5 0.001076182225460081 0.0 0.1031777803989217 1.1904670635620366E-4 82-83 8.571362857646663E-5 0.001078563159587205 0.0 0.10363015788307528 1.333323111189481E-4 84-85 9.047549683071477E-5 0.0010976106326041975 0.0 0.10374920458943149 1.3571324524607218E-4 86-87 9.047549683071477E-5 0.00110475343498557 0.0 0.1038015851402282 1.3809417937319624E-4 88 9.047549683071477E-5 0.001171419590545044 0.0 0.10380872794260958 1.3809417937319624E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 32725 0.0 51.15712 1 GTATCAA 61150 0.0 37.115555 1 TCAACGC 78315 0.0 28.509336 4 ATCAACG 78615 0.0 28.389992 3 CAACGCA 78910 0.0 28.25023 5 TATCAAC 80995 0.0 27.719604 2 AACGCAG 81590 0.0 27.43905 6 ACGCAGA 92435 0.0 24.09406 7 CGCAGAG 93675 0.0 23.788267 8 GCAGAGT 105445 0.0 20.744307 9 GTACATG 80100 0.0 19.96844 1 TACATGG 79410 0.0 19.59884 2 ACATGGG 79145 0.0 19.308165 3 AGAGTAC 98815 0.0 18.665506 10-11 GAGTACT 60125 0.0 18.38159 12-13 CAGAGTA 104730 0.0 18.095512 10-11 CTTATAC 13435 0.0 17.779184 1 CATGGGG 46915 0.0 17.298407 4 AGTACTT 65760 0.0 16.844234 12-13 GTACTTT 66515 0.0 16.569029 14-15 >>END_MODULE