##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139665_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 20917593 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.531560347311473 31.0 31.0 34.0 28.0 34.0 2 31.556468997173816 31.0 31.0 34.0 28.0 34.0 3 31.641631998480896 33.0 31.0 34.0 28.0 34.0 4 35.195392079767494 37.0 35.0 37.0 32.0 37.0 5 35.02933702744862 37.0 35.0 37.0 32.0 37.0 6 35.08040633547082 37.0 35.0 37.0 32.0 37.0 7 34.93629725944089 37.0 35.0 37.0 32.0 37.0 8 34.95870060192872 37.0 35.0 37.0 32.0 37.0 9 36.45798175727006 39.0 37.0 39.0 32.0 39.0 10-11 36.395095745480845 39.0 35.0 39.0 31.5 39.0 12-13 36.37913728888405 39.0 35.0 39.0 31.0 39.0 14-15 37.532023641534664 40.0 37.0 41.0 31.0 41.0 16-17 37.55925999707519 40.0 37.0 41.0 31.0 41.0 18-19 37.63356876195076 40.0 37.0 41.0 31.0 41.0 20-21 37.665336363972344 40.0 37.0 41.0 31.0 41.0 22-23 37.62803623943515 40.0 37.0 41.0 31.0 41.0 24-25 37.62088456642326 40.0 37.0 41.0 31.0 41.0 26-27 37.546842994824395 40.0 37.0 41.0 31.0 41.0 28-29 37.48648379121329 40.0 36.5 41.0 31.0 41.0 30-31 37.38410667680752 40.0 36.0 41.0 31.0 41.0 32-33 37.296496854621665 40.0 36.0 41.0 30.5 41.0 34-35 37.20712202877901 40.0 36.0 41.0 30.0 41.0 36-37 37.17870396934626 40.0 36.0 41.0 30.0 41.0 38-39 37.113764033894725 40.0 36.0 41.0 30.0 41.0 40-41 37.10572577044904 40.0 35.0 41.0 30.0 41.0 42-43 37.077665362806314 40.0 35.0 41.0 30.0 41.0 44-45 37.011668721540815 39.5 35.0 41.0 30.0 41.0 46-47 36.94561901562069 39.0 35.0 41.0 30.0 41.0 48-49 36.88789815568085 39.0 35.0 41.0 30.0 41.0 50-51 36.81439641571117 39.0 35.0 41.0 30.0 41.0 52-53 37.04176923279658 39.0 35.0 41.0 30.0 41.0 54-55 37.033228965487666 39.0 35.0 41.0 30.0 41.0 56-57 36.9586186744729 39.0 35.0 41.0 30.0 41.0 58-59 36.82931893647229 39.0 35.0 41.0 30.0 41.0 60-61 36.7092831834206 39.0 35.0 41.0 30.0 41.0 62-63 36.55405963552505 38.5 35.0 41.0 30.0 41.0 64-65 36.36950072070125 38.0 35.0 40.0 29.5 41.0 66-67 36.1555265092457 37.5 34.0 40.0 29.0 41.0 68-69 35.9085301228793 37.0 34.0 40.0 29.0 41.0 70-71 35.67633606477721 37.0 34.0 39.5 29.0 41.0 72-73 35.406986354600264 36.0 34.0 39.0 29.0 41.0 74-75 35.1457070794566 36.0 34.0 39.0 29.0 40.5 76-77 34.85715770338409 35.5 34.0 38.5 29.0 40.0 78-79 34.58241826123603 35.0 34.0 37.0 29.0 39.0 80-81 34.32322938099045 35.0 33.5 37.0 29.0 39.0 82-83 34.05349369791193 35.0 33.0 36.5 29.0 39.0 84-85 33.83215466448013 35.0 33.0 36.0 29.0 37.0 86-87 33.609746151731315 35.0 33.0 36.0 29.0 37.0 88-89 33.46632698051637 35.0 33.0 35.0 29.0 37.0 90-91 33.36378774551292 35.0 33.0 35.0 29.0 36.0 92-93 33.291266338110376 35.0 33.0 35.0 29.0 36.0 94-95 33.34440797029911 35.0 33.0 35.0 29.0 36.0 96-97 33.528152968014865 35.0 33.0 35.0 30.0 36.0 98-99 33.62975713667841 35.0 34.0 35.0 30.0 35.5 100 32.826107175051646 34.0 32.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 5.0 14 21.0 15 29.0 16 72.0 17 327.0 18 2468.0 19 12080.0 20 36914.0 21 79750.0 22 132053.0 23 180130.0 24 223560.0 25 263168.0 26 298823.0 27 333615.0 28 376017.0 29 426512.0 30 491221.0 31 574294.0 32 686416.0 33 843540.0 34 1084303.0 35 1436216.0 36 2090891.0 37 3506939.0 38 4849392.0 39 2852804.0 40 136031.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.86092472494326 21.89389572691275 14.497079085533407 23.748100462610587 2 14.130742966866253 22.765770671955394 41.27697773791258 21.826508623265774 3 16.402604257573994 29.201208762403972 31.970093308536978 22.426093671485052 4 11.489982673005953 20.007182962392314 40.5036555754694 27.99917878913233 5 11.395955751717226 39.86178509138367 36.76080896443313 11.98145019246597 6 26.823927934564306 41.23210989213047 19.581154866191095 12.362807307114133 7 23.893719761032823 34.41189743242576 25.115280926605692 16.579101879935724 8 23.716141098089853 37.10777647716589 22.20625739064004 16.96982503410421 9 25.651184122593023 15.868615283367667 21.804892187970527 36.67530840606879 10-11 23.02758646902137 27.412881972424287 30.355256197292153 19.204275361262194 12-13 24.356114202940468 25.420276119318252 30.066158442028744 20.157451235712532 14-15 21.64014735162531 26.40985928394025 27.849545148235094 24.100448216199347 16-17 20.56322079543288 29.394247863847696 28.49242711228236 21.550104228437068 18-19 20.57086312793657 28.500811649488178 30.490096886646374 20.438228335928876 20-21 21.88718426268952 27.47990252769298 30.170143465272346 20.46276974434515 22-23 21.48005695172165 27.567420470937343 29.95854439988717 20.993978177453837 24-25 21.060024220583657 27.815153400028912 30.18850907852016 20.936313300867273 26-27 20.98112458107175 27.908314216567643 30.090208960411953 21.020352241948657 28-29 20.889420117507726 27.70679252614594 30.319505024114648 21.084282332231684 30-31 21.276739564285453 27.67978618370727 29.92269633566078 21.12077791634649 32-33 21.13739862469533 27.967807533876478 29.923001726751103 20.971792114677086 34-35 21.197741539827042 28.11343756218395 29.89767314875135 20.791147749237663 36-37 21.201130509216817 27.881944469971494 29.70337488809963 21.213550132712058 38-39 21.040537878868697 27.984336149302052 29.877916574309054 21.097209397520192 40-41 21.234284190483784 27.85085183376033 29.817112438068843 21.09775153768704 42-43 21.2971565908068 27.94314046939077 29.402220083057156 21.357482856745268 44-45 21.253670724336935 28.30208729467629 29.13352537398215 21.310716607004622 46-47 21.550328404245178 28.102909261299285 28.686494038463582 21.66026829599195 48-49 21.522304513176874 28.2403519437352 28.614266494326724 21.623077048761203 50-51 21.44057718886887 28.338329201091916 28.454910858489875 21.76618275154934 52-53 21.5258233383228 28.315432454917733 28.53675797608295 21.621986230676516 54-55 21.573118526347187 28.253698939358095 28.518248693697863 21.654933840596854 56-57 21.70569681366748 28.401996848588873 28.27960712271019 21.612699215033462 58-59 21.445074151613287 28.52751886891356 28.55566650383159 21.47174047564156 60-61 21.68444178619425 28.73726888817914 28.190892120668686 21.38739720495792 62-63 21.4838250929735 28.83416497011872 28.228062227308715 21.453947709599067 64-65 21.40472733525361 28.635504205634067 28.318151384850864 21.64161707426146 66-67 21.66632553184045 28.68678377471015 28.08926765811145 21.557623035337944 68-69 21.558308985376996 28.59381171377865 28.252947975047928 21.594931325796427 70-71 21.612867542575962 28.203445889025602 28.40668580968831 21.777000758710123 72-73 21.709072627119877 28.293621013353416 28.271857689398722 21.725448670127985 74-75 21.474045739608723 28.464290033671052 28.303594081265555 21.75807014545467 76-77 21.539406714215414 28.442672707441098 28.290744396938265 21.727176181405223 78-79 21.526419739879536 28.437318631349505 28.212675632621114 21.82358599614984 80-81 21.53607002043093 28.468219516945144 28.207275465520397 21.78843499710353 82-83 21.71593197601027 28.279918693568373 28.377699779108173 21.626449551313183 84-85 21.685033113495773 28.342044222974128 28.19025510410299 21.782667559427107 86-87 21.50598889293223 28.527708604115375 28.30817011608402 21.658132386868374 88-89 21.669498206196156 28.362260570440178 28.27700480104672 21.691236422316948 90-91 21.648203370387183 28.396158035284184 28.344998438903872 21.610640155424754 92-93 21.719756563159972 28.427021337437363 28.22631118406582 21.626910915336843 94-95 21.447248533388354 28.402331563793876 28.393366227904803 21.757053674912967 96-97 21.51258990007712 28.611540546561017 28.41919639430363 21.456673159058237 98-99 22.424754931827785 30.550276077409805 28.675441605254765 18.34952738550765 100 21.671194683143426 31.417016482083902 22.418705183451895 24.493083651320777 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 5564.0 1 5741.0 2 9194.0 3 12577.0 4 15841.5 5 27583.5 6 37737.5 7 42690.5 8 43835.0 9 39116.5 10 31957.5 11 24478.5 12 24795.5 13 35484.5 14 64324.0 15 107871.0 16 144309.0 17 163504.5 18 167257.5 19 158754.5 20 141565.0 21 123263.0 22 112367.5 23 115195.0 24 132588.5 25 165206.5 26 211804.5 27 263531.0 28 313624.5 29 370400.5 30 428879.5 31 484457.0 32 549308.5 33 614799.5 34 678644.0 35 738953.5 36 801434.0 37 855797.5 38 878482.5 39 888804.5 40 898728.5 41 896720.0 42 884249.5 43 888917.5 44 899728.0 45 904267.0 46 904209.5 47 892445.0 48 871814.5 49 838819.5 50 801795.5 51 756053.0 52 702568.5 53 648153.0 54 589669.5 55 531679.5 56 476915.0 57 422956.5 58 372863.0 59 328149.0 60 279122.5 61 222870.0 62 172070.0 63 133911.5 64 104038.5 65 80145.5 66 61041.0 67 47397.0 68 37423.0 69 28648.5 70 21737.5 71 16470.5 72 12643.5 73 9706.5 74 7091.0 75 5190.0 76 3854.0 77 2765.0 78 2015.0 79 1473.0 80 1074.5 81 787.5 82 608.0 83 416.0 84 290.5 85 235.5 86 195.5 87 157.5 88 107.0 89 73.5 90 57.5 91 45.5 92 32.5 93 16.5 94 6.5 95 5.0 96 4.5 97 4.0 98 3.0 99 3.5 100 6.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.012730910291638241 3 0.0 4 0.1266445905128759 5 0.035391261317686024 6 0.004474702227928423 7 0.005163117955302028 8 4.2069850006164666E-4 9 5.83241102358192E-4 10-11 0.004771103443880947 12-13 2.6293656253852916E-5 14-15 4.302598296085023E-5 16-17 3.6811118755394087E-4 18-19 2.1512991480425115E-5 20-21 8.92455349956387E-4 22-23 0.030486858965873765 24-25 0.0010724601073630936 26-27 0.004645196726003828 28-29 6.212129037477558E-4 30-31 0.0025791292178754424 32-33 0.003423849619869036 34-35 0.020084899386202164 36-37 0.00439862738320756 38-39 0.001701425421621986 40-41 0.0011289535898643195 42-43 0.0010363674415609504 44-45 0.030723031968535548 46-47 0.0038790809586605104 48-49 0.005701371489927061 50-51 0.019501513104711436 52-53 0.004406342083485867 54-55 0.0011035731233444395 56-57 0.001348517259331895 58-59 0.004173685209368008 60-61 0.0029590342373485997 62-63 9.097509527554646E-4 64-65 1.7694656458104433E-4 66-67 0.0 68-69 2.8113577245582024E-4 70-71 0.013390794371582703 72-73 0.0044451894497198755 74-75 0.003061261381935772 76-77 2.9932483392485408E-6 78-79 0.0 80-81 5.509213716142476E-5 82-83 3.097670991283835E-6 84-85 1.2532901215609952E-5 86-87 0.005571828909101507 88-89 0.0 90-91 9.43063117133187E-5 92-93 1.1220404080412147E-4 94-95 2.41309393028451E-4 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 13806.0 20-21 26877.0 22-23 29552.0 24-25 32078.0 26-27 37678.0 28-29 53179.0 30-31 81865.0 32-33 92582.0 34-35 113288.0 36-37 143634.0 38-39 185013.0 40-41 182850.0 42-43 205816.0 44-45 246337.0 46-47 233076.0 48-49 201127.0 50-51 174070.0 52-53 158416.0 54-55 162327.0 56-57 171128.0 58-59 178562.0 60-61 179946.0 62-63 168557.0 64-65 179266.0 66-67 189196.0 68-69 196887.0 70-71 196350.0 72-73 171051.0 74-75 166060.0 76-77 173904.0 78-79 187357.0 80-81 197567.0 82-83 185163.0 84-85 181437.0 86-87 186363.0 88-89 204484.0 90-91 223135.0 92-93 229235.0 94-95 254127.0 96-97 634634.0 98-99 1260228.0 100-101 1.2829385E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.05034267560212 #Duplication Level Percentage of deduplicated Percentage of total 1 88.55741627792153 71.77608935791486 2 7.341766950936285 11.90105454435593 3 2.049390552797074 4.983114197410336 4 0.8377006116234755 2.7158368652657674 5 0.4370721316961112 1.7712423023962858 6 0.2391245736831754 1.1628677183507183 7 0.14357068397515782 0.8145517194049984 8 0.09366011200969068 0.6072947338736567 9 0.06585897258789747 0.4804103066860959 >10 0.22561751054927986 2.836408563205057 >50 0.005443437881926495 0.3088951671919896 >100 0.0030979700459506476 0.458607313439838 >500 2.2690381437590968E-4 0.11629792597537127 >1k 5.331047810356548E-5 0.06732928452897942 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 9.561329546855606E-6 2 0.0 1.434199432028341E-5 0.0 0.0 9.561329546855606E-6 3 0.0 1.434199432028341E-5 0.0 4.780664773427803E-6 9.561329546855606E-6 4 0.0 2.3903323867139014E-5 0.0 9.561329546855606E-6 9.561329546855606E-6 5 9.561329546855606E-6 2.3903323867139014E-5 0.0 1.434199432028341E-5 9.561329546855606E-6 6 9.561329546855606E-6 2.3903323867139014E-5 0.0 1.434199432028341E-5 2.3903323867139014E-5 7 9.561329546855606E-6 2.3903323867139014E-5 0.0 1.434199432028341E-5 2.3903323867139014E-5 8 1.434199432028341E-5 2.3903323867139014E-5 0.0 1.434199432028341E-5 2.868398864056682E-5 9 1.434199432028341E-5 5.736797728113364E-5 0.0 1.434199432028341E-5 3.346465341399462E-5 10-11 1.434199432028341E-5 5.736797728113364E-5 0.0 3.107432102728072E-5 3.346465341399462E-5 12-13 2.151299148042511E-5 5.736797728113364E-5 0.0 3.346465341399462E-5 3.346465341399462E-5 14-15 2.3903323867139014E-5 8.605196592170046E-5 0.0 4.302598296085022E-5 3.8245318187422425E-5 16-17 2.3903323867139014E-5 8.605196592170046E-5 0.0 6.692930682798924E-5 4.302598296085023E-5 18-19 3.107432102728072E-5 9.561329546855607E-5 0.0 7.170997160141704E-5 4.302598296085023E-5 20-21 4.780664773427803E-5 1.0517462501541167E-4 0.0 1.0039396024198385E-4 4.302598296085023E-5 22-23 5.019698012099193E-5 1.2429728410912288E-4 0.0 1.0995528978883948E-4 5.0196980120991934E-5 24-25 5.258731250770583E-5 1.3624894604269237E-4 0.0 1.45810275589548E-4 6.692930682798924E-5 26-27 5.258731250770583E-5 1.482006079762619E-4 0.0 1.840555937769704E-4 6.692930682798924E-5 28-29 5.258731250770583E-5 1.5059094036297578E-4 0.0 2.987915483392377E-4 6.692930682798924E-5 30-31 5.258731250770583E-5 1.7210393184340092E-4 0.0 0.0010087202671932665 6.692930682798924E-5 32-33 5.258731250770583E-5 1.7210393184340092E-4 0.0 0.0024094550458076125 8.127130114827265E-5 34-35 5.736797728113364E-5 2.0556858525739555E-4 0.0 0.004128104031854908 8.605196592170046E-5 36-37 5.736797728113364E-5 2.3903323867139015E-4 0.0 0.006535168745275807 8.605196592170046E-5 38-39 6.214864205456144E-5 2.5337523299167355E-4 0.0 0.010866451030001396 8.605196592170046E-5 40-41 6.692930682798924E-5 3.011818807259516E-4 0.0 0.015529989516480219 8.605196592170046E-5 42-43 6.692930682798924E-5 3.131335426595211E-4 0.0 0.019629409559694562 8.605196592170046E-5 44-45 6.692930682798924E-5 3.465981960735157E-4 0.0 0.02414474743819712 8.605196592170046E-5 46-47 6.692930682798924E-5 3.681111875539408E-4 0.0 0.029056880492894187 8.844229830841437E-5 48-49 6.692930682798924E-5 3.7050151994065474E-4 0.0 0.03402638152487239 9.561329546855606E-5 50-51 6.692930682798924E-5 4.183081676749328E-4 0.0 0.03919667047733456 9.561329546855606E-5 52-53 6.931963921470315E-5 4.254791648350745E-4 0.0 0.04418051350363304 1.0756495740212556E-4 54-55 7.170997160141705E-5 4.254791648350745E-4 0.0 0.04878429368044401 1.2429728410912288E-4 56-57 7.170997160141705E-5 4.326501619952162E-4 0.0 0.053041475661181475 1.338586136559785E-4 58-59 7.410030398813096E-5 4.3504049438193007E-4 0.0 0.05738470960784063 1.386392784294063E-4 60-61 8.844229830841437E-5 4.541631534756413E-4 0.0 0.0623135749892447 1.482006079762619E-4 62-63 1.0039396024198387E-4 4.685051477959247E-4 0.0 0.06676198356091927 1.673232670699731E-4 64-65 1.0039396024198387E-4 5.210924603036305E-4 0.0 0.07094267490528189 1.673232670699731E-4 66-67 1.0517462501541167E-4 5.210924603036305E-4 0.0 0.07492496866154724 1.673232670699731E-4 68-69 1.0517462501541167E-4 5.234827926903444E-4 0.0 0.07895028840077345 1.673232670699731E-4 70-71 1.0517462501541167E-4 5.258731250770584E-4 0.0 0.08290628850078496 1.8644592616368433E-4 72-73 1.0995528978883948E-4 5.258731250770584E-4 0.0 0.08588703298701719 2.0556858525739555E-4 74-75 1.1473595456226728E-4 5.426054517840557E-4 0.0 0.08829170736805139 2.0556858525739555E-4 76-77 1.1473595456226728E-4 5.56947446104339E-4 0.0 0.09051471648769531 2.0556858525739555E-4 78-79 1.1473595456226728E-4 5.641184432644807E-4 0.0 0.09199672256745793 2.0556858525739555E-4 80-81 1.1473595456226728E-4 5.641184432644807E-4 0.0 0.09247000838002728 2.1273958241753725E-4 82-83 1.1473595456226728E-4 5.641184432644807E-4 0.0 0.09277836125791337 2.2947190912453455E-4 84-85 1.1473595456226728E-4 5.688991080379086E-4 0.0 0.09286202289144836 2.2947190912453455E-4 86-87 1.1473595456226728E-4 5.784604375847641E-4 0.0 0.09287636488576864 2.2947190912453455E-4 88 1.1473595456226728E-4 5.975830966784754E-4 0.0 0.09287875521815536 2.3425257389796236E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 36615 0.0 50.797832 1 GTATCAA 67150 0.0 36.46573 1 CTTATAC 16095 0.0 28.2713 1 ATCAACG 86550 0.0 27.850769 3 TCAACGC 87135 0.0 27.678078 4 CAACGCA 87300 0.0 27.559288 5 TATCAAC 88820 0.0 27.395998 2 AACGCAG 90460 0.0 26.730238 6 TATACAC 22660 0.0 23.708364 3 ACGCAGA 101645 0.0 23.67426 7 CGCAGAG 102665 0.0 23.42273 8 GCAGAGT 115550 0.0 20.48081 9 GTACATG 86065 0.0 20.22185 1 TACATGG 85555 0.0 19.9008 2 ACATGGG 85030 0.0 19.677053 3 TTATACA 25545 0.0 18.934166 2 TATGCCG 12185 0.0 18.772486 42-43 ACATCTC 24120 0.0 18.698582 8 AGAGTAC 107480 0.0 18.695913 10-11 ACACATC 24675 0.0 18.580843 6 >>END_MODULE