##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139660_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10467634 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.93718943554962 34.0 31.0 34.0 31.0 34.0 2 33.04509032318096 34.0 33.0 34.0 31.0 34.0 3 33.10888821676417 34.0 33.0 34.0 31.0 34.0 4 36.47270615308101 37.0 37.0 37.0 35.0 37.0 5 36.433241265409166 37.0 37.0 37.0 35.0 37.0 6 36.461340642976246 37.0 37.0 37.0 35.0 37.0 7 36.41882100577838 37.0 37.0 37.0 35.0 37.0 8 36.40216260904804 37.0 37.0 37.0 35.0 37.0 9 38.197639695847215 39.0 39.0 39.0 37.0 39.0 10-11 38.14468016363583 39.0 39.0 39.0 37.0 39.0 12-13 38.11811527800838 39.0 39.0 39.0 37.0 39.0 14-15 39.60272502840661 41.0 40.0 41.0 37.0 41.0 16-17 39.578846805304806 41.0 40.0 41.0 37.0 41.0 18-19 39.569275731268405 41.0 40.0 41.0 37.0 41.0 20-21 39.538951571802826 41.0 39.5 41.0 37.0 41.0 22-23 39.46009724405148 41.0 39.0 41.0 36.5 41.0 24-25 39.30899656683435 41.0 39.0 41.0 36.0 41.0 26-27 39.317416954354094 40.5 39.0 41.0 36.0 41.0 28-29 39.24484584492927 41.0 39.0 41.0 36.0 41.0 30-31 39.17862507162337 41.0 39.0 41.0 36.0 41.0 32-33 39.004103067972956 40.0 39.0 41.0 35.0 41.0 34-35 38.92798327904723 40.0 39.0 41.0 35.0 41.0 36-37 39.133126226938444 40.5 39.0 41.0 35.0 41.0 38-39 39.20998592895954 41.0 39.0 41.0 35.0 41.0 40-41 39.1906367368436 41.0 39.0 41.0 35.0 41.0 42-43 39.042825502026425 41.0 39.0 41.0 35.0 41.0 44-45 39.0660676268703 40.5 39.0 41.0 35.0 41.0 46-47 39.01846896092625 40.0 39.0 41.0 35.0 41.0 48-49 38.949465545219915 40.0 39.0 41.0 35.0 41.0 50-51 38.86815506632569 40.0 38.0 41.0 35.0 41.0 52-53 38.74446621050048 40.0 38.0 41.0 35.0 41.0 54-55 38.59664090635211 40.0 38.0 41.0 35.0 41.0 56-57 38.43707395757136 40.0 37.5 41.0 34.0 41.0 58-59 38.2632448268691 40.0 37.0 41.0 34.0 41.0 60-61 38.06356874269104 40.0 36.5 41.0 34.0 41.0 62-63 37.818702595604066 39.0 36.0 41.0 34.0 41.0 64-65 37.52806232891378 39.0 35.5 41.0 33.5 41.0 66-67 37.1901681123965 38.5 35.0 40.0 33.0 41.0 68-69 36.84123479421383 37.5 35.0 40.0 33.0 41.0 70-71 36.46954452466515 37.0 35.0 39.5 32.0 41.0 72-73 36.117417620681714 36.5 35.0 39.0 32.0 41.0 74-75 35.770774650245485 36.0 35.0 39.0 32.0 40.0 76-77 34.91008457544959 35.0 34.0 37.0 30.5 39.0 78-79 35.12220590210973 35.0 34.0 37.0 31.5 39.0 80-81 34.91026599386599 35.0 34.0 37.0 32.0 39.0 82-83 34.656032856045385 35.0 34.0 36.0 31.0 37.5 84-85 34.41391708979165 35.0 34.0 36.0 31.0 37.0 86-87 34.2181791094202 35.0 34.0 35.5 31.0 37.0 88-89 34.03942434706706 35.0 34.0 35.0 31.0 36.0 90-91 33.862454869369024 35.0 34.0 35.0 31.0 36.0 92-93 33.74320950673613 35.0 34.0 35.0 31.0 36.0 94-95 33.67923850528884 35.0 34.0 35.0 31.0 36.0 96-97 33.66039028905875 35.0 34.0 35.0 31.0 35.0 98-99 33.68546441118542 35.0 34.0 35.0 31.0 35.0 100-101 32.28537740763306 34.0 31.5 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 8.0 20 39.0 21 193.0 22 887.0 23 2923.0 24 7494.0 25 15446.0 26 27558.0 27 43682.0 28 63025.0 29 85508.0 30 111450.0 31 143049.0 32 184474.0 33 246326.0 34 357135.0 35 543013.0 36 1003646.0 37 2292736.0 38 3411516.0 39 1811717.0 40 115807.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.641505043068946 20.18863097429658 13.99310484107488 25.17675914155959 2 14.159380239772165 21.00677399274533 41.19278691996146 23.64105884752104 3 17.529644234790783 25.658243305029583 30.50344519114826 26.30866726903138 4 12.027245125307209 18.015045233717572 38.33656201582898 31.621147625146236 5 13.285972742264393 37.818708602154025 35.536043770731766 13.359274884849814 6 30.883922766118875 37.563426462942815 18.53824847143108 13.014402299507225 7 27.621225217871793 32.07165255458163 22.453863455546358 17.853258772000217 8 24.97543363949174 36.8974028919426 20.43734904561385 17.689814422951812 9 25.751254802085715 16.571632029425693 20.412259291468033 37.264853877020556 10-11 24.452206678223558 26.398797474195216 28.914198757809075 20.23479708977215 12-13 25.45687974952124 23.754188386793043 28.769533783852207 22.019398079833515 14-15 22.44551364388436 25.384786170673873 26.000352330756805 26.16934785468496 16-17 22.317125935037616 28.57865493296618 26.648341596428683 22.455877535567517 18-19 22.35993348640199 27.89009913797139 28.063758247565783 21.686209128060842 20-21 23.133677437401694 27.002163675022278 27.912114745854165 21.95204414172186 22-23 22.848738400673536 26.95869586901365 27.71276912864174 22.479796601671076 24-25 22.693634545679103 27.0978737066763 27.75770858073438 22.450783166910217 26-27 22.59603648896893 27.20023290871912 27.78685429883831 22.416876303473636 28-29 22.55953124427404 27.18044915868366 27.82332001985414 22.43669957718815 30-31 22.786330480838693 27.135861768678577 27.670385767489357 22.40742198299337 32-33 22.667628178140365 27.233271917341597 27.611285733701084 22.487814170816954 34-35 22.667377187458726 27.271046380632363 27.720175661424463 22.34140077048445 36-37 22.704550371999517 27.166521703508508 27.646228530946598 22.48269939354538 38-39 22.513888367247493 27.26836430616669 27.759197601381636 22.458549725204186 40-41 22.75728301258921 27.134374854068977 27.664783837651324 22.443558295690487 42-43 22.70130442081256 27.179974175765985 27.503609774070814 22.615111629350636 44-45 22.675435488808198 27.267204730512745 27.41892255958404 22.638437221095018 46-47 22.791404551915054 27.208552632937632 27.193778888576198 22.806263926571116 48-49 22.679488763590268 27.2691872745468 27.26795625231866 22.783367709544272 50-51 22.648577190891093 27.38193194693582 27.224947864927667 22.744542997245425 52-53 22.832710161705634 27.279936110667492 27.143137665520577 22.744216062106297 54-55 22.81813205293954 27.217817373985532 27.133019357938327 22.831031215136605 56-57 22.808946398727215 27.371705344542985 27.083506660703765 22.735841596026034 58-59 22.721791853666236 27.398744735583115 27.156930859210597 22.722532551540052 60-61 22.809256432503656 27.421524639540817 27.05859493580952 22.710623992146004 62-63 22.79816468630635 27.54054952111132 27.0064428183766 22.65484297420573 64-65 22.7880041335521 27.410143806257835 27.00585359602396 22.7959984641661 66-67 22.84070485191901 27.454049305704515 26.887201576404035 22.818044265972436 68-69 22.761513713920305 27.37663417734305 27.023831935983424 22.83802017275322 70-71 22.742125220554698 27.223701293981467 27.059954762436924 22.974218723026908 72-73 22.811086758598993 27.23472249808554 26.97957986367441 22.97461087964106 74-75 22.708302497159977 27.38350831066663 26.969012118957007 22.939177073216385 76-77 22.84727561167645 27.273125632729805 26.947775366298423 22.93182338929532 78-79 22.761208398017942 27.28227923994087 26.890104344818194 23.06640801722299 80-81 22.783562604637307 27.355681580710943 26.890353310802535 22.97040250384921 82-83 22.818985371907633 27.349211708186928 26.957644262370305 22.874158657535137 84-85 22.859103203428294 27.308023521976484 26.907396639924997 22.92547663467023 86-87 22.771771788038674 27.30532533303995 27.02957509695434 22.893327781967038 88-89 22.808047795430895 27.2445297268473 27.003715781008804 22.943706696713008 90-91 22.800456591385636 27.349974968587592 26.955172086002637 22.89439635402413 92-93 22.852596948286454 27.27974101415951 26.99589254336644 22.871769494187596 94-95 22.69595470494456 27.319175430374703 27.048863973786126 22.936005890894613 96-97 22.7333247370259 27.326212195257487 27.058794912822627 22.88166815489399 98-99 22.909945960420544 27.86830728068241 27.08174531098404 22.140001447913008 100-101 20.797248954276707 31.625297624248343 25.01796006643538 22.559493355039567 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1809.0 1 1519.0 2 1802.5 3 2497.5 4 3189.5 5 4711.0 6 5991.5 7 7018.0 8 7646.0 9 7552.5 10 7073.5 11 6539.5 12 7218.0 13 9845.5 14 16058.0 15 24621.5 16 31767.0 17 36014.5 18 37205.0 19 35726.5 20 32741.5 21 29731.0 22 28323.5 23 30082.5 24 35480.5 25 44987.5 26 58330.5 27 74288.0 28 93404.0 29 115457.5 30 138293.5 31 163164.5 32 190904.0 33 219562.0 34 248634.5 35 277169.0 36 308565.0 37 335623.5 38 358355.0 39 381672.0 40 401626.0 41 419838.0 42 432899.0 43 446372.5 44 459297.0 45 468898.0 46 477208.5 47 480725.5 48 478660.5 49 473885.5 50 467671.0 51 454693.0 52 434419.5 53 410121.5 54 384503.0 55 357634.0 56 328298.5 57 297102.5 58 265155.0 59 230757.0 60 193496.0 61 157016.5 62 125252.5 63 97825.0 64 73191.0 65 54483.0 66 41430.5 67 31747.0 68 24373.5 69 18095.0 70 13021.5 71 9373.0 72 6706.0 73 4606.0 74 3003.5 75 1930.0 76 1288.0 77 839.5 78 529.5 79 326.5 80 227.5 81 168.0 82 131.0 83 91.0 84 60.0 85 42.5 86 32.0 87 24.0 88 14.5 89 9.0 90 6.0 91 3.5 92 2.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.03057042307745953 3 0.0 4 0.0 5 0.0 6 0.0 7 9.553257211706102E-5 8 6.49621490396015E-4 9 4.4900308895018685E-4 10-11 0.0 12-13 0.0 14-15 0.0018819916707061024 16-17 6.687280048194271E-5 18-19 0.0 20-21 2.1972984883828354E-4 22-23 0.0019155886544222178 24-25 7.166665830555653E-4 26-27 0.014490168072090305 28-29 0.3145145021562535 30-31 0.3153573077714415 32-33 0.3326744493192318 34-35 0.21438879554161414 36-37 0.07123789122688275 38-39 0.062334005405298834 40-41 0.025402711440302355 42-43 0.010010842444015254 44-45 0.013451199342935335 46-47 0.009896875065475508 48-49 0.006627750630958808 50-51 0.006986964306212411 52-53 0.002785914870105425 54-55 0.0010501030276455557 56-57 0.003460712342266561 58-59 0.003825904506702367 60-61 0.0028364432035618407 62-63 0.0020274553326586745 64-65 6.588690611395898E-4 66-67 0.008309671308370237 68-69 0.012524917905928041 70-71 0.012729677852847421 72-73 0.010676205607648296 74-75 0.010988122906621899 76-77 0.010123825055610653 78-79 0.0026046218450998756 80-81 0.002107714288339278 82-83 0.0017503445838959913 84-85 1.845072803805229E-5 86-87 0.0029947591092976253 88-89 0.0 90-91 0.009524207317623103 92-93 0.02060315709952727 94-95 0.0014770539341628266 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 137.0 20-21 505.0 22-23 1190.0 24-25 2717.0 26-27 4446.0 28-29 8482.0 30-31 23002.0 32-33 30153.0 34-35 42755.0 36-37 64738.0 38-39 75510.0 40-41 74869.0 42-43 85904.0 44-45 100395.0 46-47 99641.0 48-49 92031.0 50-51 84916.0 52-53 83527.0 54-55 91081.0 56-57 94714.0 58-59 94005.0 60-61 91759.0 62-63 91118.0 64-65 96679.0 66-67 101868.0 68-69 100831.0 70-71 96647.0 72-73 92427.0 74-75 93660.0 76-77 95565.0 78-79 100607.0 80-81 100260.0 82-83 97450.0 84-85 98058.0 86-87 102448.0 88-89 108638.0 90-91 113652.0 92-93 117046.0 94-95 131916.0 96-97 205887.0 98-99 896404.0 100-101 6379996.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.59531615014875 #Duplication Level Percentage of deduplicated Percentage of total 1 90.00922751696 77.04368285744859 2 7.038993955335498 12.05009825971856 3 1.6615668902270275 4.266670298208058 4 0.5965814005249191 2.0425829434891587 5 0.28167846585457956 1.2055178668755808 6 0.1438177996968049 0.7386078019840068 7 0.0807877409766842 0.48405365609689277 8 0.05223707264026335 0.3576998997921302 9 0.03155839006570641 0.2431125337377468 >10 0.10098960483519102 1.347726094224737 >50 0.0019930955441370326 0.11409033206046418 >100 5.141063965198189E-4 0.06828413837222712 >500 3.59752230539025E-5 0.020323093698569383 >1k 1.798571964332992E-5 0.017550224293269925 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.9106514423412206E-5 0.0 0.0 0.0 3 0.0 1.9106514423412206E-5 0.0 9.553257211706103E-6 0.0 4 0.0 3.821302884682441E-5 0.0 2.8659771635118308E-5 0.0 5 0.0 3.821302884682441E-5 0.0 2.8659771635118308E-5 0.0 6 1.3374560096388543E-4 3.821302884682441E-5 0.0 2.8659771635118308E-5 1.9106514423412206E-5 7 1.3374560096388543E-4 4.776628605853052E-5 0.0 3.821302884682441E-5 1.9106514423412206E-5 8 1.3374560096388543E-4 5.7319543270236616E-5 0.0 3.821302884682441E-5 1.9106514423412206E-5 9 1.3374560096388543E-4 6.687280048194271E-5 0.0 4.776628605853052E-5 1.9106514423412206E-5 10-11 1.3374560096388543E-4 6.687280048194271E-5 0.0 6.687280048194271E-5 1.9106514423412206E-5 12-13 1.385222295697385E-4 6.687280048194271E-5 0.0 9.553257211706103E-5 1.9106514423412206E-5 14-15 2.0061840144582817E-4 9.553257211706103E-5 0.0 1.2419234375217933E-4 2.388314302926526E-5 16-17 3.295873738038606E-4 9.553257211706103E-5 0.0 1.289689723580324E-4 3.821302884682441E-5 18-19 3.343640024097136E-4 1.0986245793462018E-4 0.0 1.5285211538729765E-4 3.821302884682441E-5 20-21 3.3914063101556666E-4 1.2419234375217933E-4 0.0 1.6240537259900375E-4 3.821302884682441E-5 22-23 3.439172596214197E-4 1.8151188702241594E-4 0.0 1.767352584165629E-4 4.776628605853052E-5 24-25 3.4869388822727273E-4 2.1972491586924036E-4 0.0 2.1017165865753427E-4 5.7319543270236616E-5 26-27 3.630237740448319E-4 2.2927817308094646E-4 0.0 3.0092760216874227E-4 6.687280048194271E-5 28-29 3.72577031256538E-4 2.3883143029265256E-4 0.0 6.018552043374845E-4 6.687280048194271E-5 30-31 3.72577031256538E-4 2.865977163511831E-4 0.0 0.001485531496420299 6.687280048194271E-5 32-33 3.72577031256538E-4 2.865977163511831E-4 0.0 0.003921612085405355 7.164942908779578E-5 34-35 4.0123680289165634E-4 3.152574879863014E-4 0.0 0.007031197307815692 8.597931490535492E-5 36-37 4.0123680289165634E-4 3.439172596214197E-4 0.0 0.011263290252601496 8.597931490535492E-5 38-39 4.0123680289165634E-4 3.534705168331258E-4 0.0 0.01775472852795579 8.597931490535492E-5 40-41 4.0123680289165634E-4 3.7735365986239105E-4 0.0 0.024518434633843712 8.597931490535492E-5 42-43 4.2034331731506853E-4 3.8213028846824414E-4 0.0 0.031191384796220425 8.597931490535492E-5 44-45 4.346732031326277E-4 4.1079006010336246E-4 0.0 0.039020279081213576 8.597931490535492E-5 46-47 4.776628605853051E-4 4.537797175560399E-4 0.0 0.04682529022317746 8.597931490535492E-5 48-49 4.776628605853051E-4 4.63332974767746E-4 0.0 0.05488823930985741 8.597931490535492E-5 50-51 4.919927464028643E-4 5.349824038555417E-4 0.0 0.06222991747705355 8.597931490535492E-5 52-53 4.967693750087173E-4 5.349824038555417E-4 0.0 0.06938530712862143 8.597931490535492E-5 54-55 5.015460036145704E-4 5.349824038555417E-4 0.0 0.07700402975495704 8.597931490535492E-5 56-57 5.302057752496887E-4 5.349824038555417E-4 0.0 0.08422629220700685 8.597931490535492E-5 58-59 5.54088918278954E-4 5.397590324613948E-4 0.0 0.09145810791626838 9.075594351120797E-5 60-61 5.827486899140723E-4 5.445356610672479E-4 0.0 0.09847019870966064 9.553257211706103E-5 62-63 6.49621490396015E-4 5.445356610672479E-4 0.0 0.10526734121578954 9.553257211706103E-5 64-65 6.543981190018681E-4 6.209617187608967E-4 0.0 0.11162503389017996 9.553257211706103E-5 66-67 7.117176622721047E-4 6.352916045784558E-4 0.0 0.11829798405255668 9.553257211706103E-5 68-69 7.164942908779577E-4 6.591747476077211E-4 0.0 0.12507602004426216 9.553257211706103E-5 70-71 7.260475480896638E-4 6.591747476077211E-4 0.0 0.13132385026071794 1.1463908654047323E-4 72-73 7.547073197247821E-4 6.591747476077211E-4 0.0 0.1362198945817173 1.4329885817559155E-4 74-75 7.547073197247821E-4 6.878345192428394E-4 0.0 0.14003164420918807 1.4329885817559155E-4 76-77 7.547073197247821E-4 7.594839483306352E-4 0.0 0.14336095434746762 1.480754867814446E-4 78-79 7.547073197247821E-4 7.833670913599004E-4 0.0 0.1466711579713238 1.5285211538729765E-4 80-81 7.594839483306352E-4 7.833670913599004E-4 0.0 0.14820923238240846 1.576287439931507E-4 82-83 7.642605769364883E-4 7.929203485716065E-4 0.0 0.14884452398698694 1.7195862981070985E-4 84-85 7.642605769364883E-4 7.976969771774596E-4 0.0 0.14915022821776153 1.7195862981070985E-4 86-87 7.833670913599004E-4 8.072502343891657E-4 0.0 0.14925053741848443 1.767352584165629E-4 88-89 8.024736057833127E-4 8.215801202067248E-4 0.0 0.14929830370454297 1.9106514423412207E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10480 0.0 44.778618 1 GTATCAA 18070 0.0 34.072598 1 TCAACGC 20985 0.0 28.123554 4 ATCAACG 21520 0.0 27.483362 3 CAACGCA 21575 0.0 27.354475 5 AACGCAG 22365 0.0 26.50173 6 TATCAAC 22730 0.0 26.32416 2 GTACATG 30410 0.0 22.79281 1 ACGCAGA 26625 0.0 22.261452 7 TACATGG 30755 0.0 21.84939 2 CGCAGAG 27515 0.0 21.526009 8 ACATGGG 30850 0.0 21.132576 3 CATGGGG 22980 0.0 18.75984 4 GCAGAGT 33470 0.0 17.544659 9 GAGTACT 16185 0.0 16.964502 12-13 AGAGTAC 28985 0.0 16.887648 10-11 CAGAGTA 32335 0.0 16.152039 10-11 GTGGTAT 6350 0.0 15.6601 1 ATGGGGG 13705 0.0 15.187667 5 GTACTTT 18195 0.0 15.184094 14-15 >>END_MODULE