##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139658_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8121058 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.96098427076866 34.0 31.0 34.0 31.0 34.0 2 33.065270067028216 34.0 33.0 34.0 31.0 34.0 3 33.13015890294097 34.0 33.0 34.0 31.0 34.0 4 36.48793334563058 37.0 37.0 37.0 35.0 37.0 5 36.44981897678849 37.0 37.0 37.0 35.0 37.0 6 36.47668862850136 37.0 37.0 37.0 35.0 37.0 7 36.43262515795356 37.0 37.0 37.0 35.0 37.0 8 36.41605514946452 37.0 37.0 37.0 35.0 37.0 9 38.21651329174105 39.0 39.0 39.0 37.0 39.0 10-11 38.1628200414281 39.0 39.0 39.0 37.0 39.0 12-13 38.13766605287144 39.0 39.0 39.0 37.0 39.0 14-15 39.62955756503648 41.0 40.0 41.0 37.0 41.0 16-17 39.60670647839235 41.0 40.0 41.0 37.0 41.0 18-19 39.59388382646695 41.0 40.0 41.0 37.0 41.0 20-21 39.55887997013352 41.0 40.0 41.0 37.0 41.0 22-23 39.483650072493035 41.0 39.0 41.0 37.0 41.0 24-25 39.32987120258633 41.0 39.0 41.0 36.0 41.0 26-27 39.34059385967544 40.5 39.0 41.0 36.5 41.0 28-29 39.26568602834104 41.0 39.0 41.0 36.0 41.0 30-31 39.206376243688986 41.0 39.0 41.0 36.0 41.0 32-33 39.03696505756454 40.5 39.0 41.0 35.5 41.0 34-35 38.96339219984708 40.0 39.0 41.0 35.0 41.0 36-37 39.17862331299686 41.0 39.0 41.0 35.5 41.0 38-39 39.25725737431662 41.0 39.0 41.0 36.0 41.0 40-41 39.2377768303017 41.0 39.0 41.0 35.0 41.0 42-43 39.0896955853239 41.0 39.0 41.0 35.0 41.0 44-45 39.112949573283174 41.0 39.0 41.0 35.0 41.0 46-47 39.063800632069004 40.5 39.0 41.0 35.0 41.0 48-49 38.99038404078402 40.0 39.0 41.0 35.0 41.0 50-51 38.90577125987588 40.0 38.5 41.0 35.0 41.0 52-53 38.779511525339146 40.0 38.0 41.0 35.0 41.0 54-55 38.629624476663984 40.0 38.0 41.0 35.0 41.0 56-57 38.466441149807906 40.0 37.5 41.0 34.5 41.0 58-59 38.28633200111035 40.0 37.0 41.0 34.0 41.0 60-61 38.08462291562449 40.0 36.5 41.0 34.0 41.0 62-63 37.83486972139328 39.0 36.0 41.0 34.0 41.0 64-65 37.542596300882764 39.0 35.5 41.0 33.5 41.0 66-67 37.20231897130584 38.5 35.0 40.0 33.0 41.0 68-69 36.850233087860985 37.5 35.0 40.0 33.0 41.0 70-71 36.47621683311027 37.0 35.0 39.5 32.5 41.0 72-73 36.12249468454522 36.5 35.0 39.0 32.0 41.0 74-75 35.7757777642763 36.0 35.0 39.0 32.0 40.0 76-77 34.92032588742275 35.0 34.0 37.0 30.5 39.0 78-79 35.12432497708102 35.0 34.0 37.0 32.0 39.0 80-81 34.9119901299926 35.0 34.0 37.0 32.0 39.0 82-83 34.66458981846837 35.0 34.0 36.0 32.0 37.5 84-85 34.428684787534564 35.0 34.0 36.0 31.0 37.0 86-87 34.23317614059576 35.0 34.0 35.5 31.0 37.0 88-89 34.060228057431104 35.0 34.0 35.0 31.0 36.0 90-91 33.89002088602717 35.0 34.0 35.0 31.0 36.0 92-93 33.77496945024525 35.0 34.0 35.0 31.0 36.0 94-95 33.71443179243513 35.0 34.0 35.0 31.0 35.5 96-97 33.695934281829594 35.0 34.0 35.0 31.0 35.0 98-99 33.71805124727327 35.0 34.0 35.0 31.0 35.0 100-101 32.1555725566576 33.5 31.5 34.5 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 4.0 20 29.0 21 164.0 22 604.0 23 1971.0 24 5120.0 25 10296.0 26 19267.0 27 31078.0 28 45498.0 29 62346.0 30 82609.0 31 107000.0 32 138691.0 33 185953.0 34 273310.0 35 416470.0 36 768412.0 37 1744585.0 38 2644313.0 39 1485196.0 40 98140.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.3002098987595 19.754261082730846 13.634048667057913 25.311480351451742 2 14.42963799807013 20.647910265281844 41.15223818238567 23.77021355426235 3 17.815375779855287 25.188097412923295 30.169702026509356 26.826824780712073 4 12.12796411502048 17.54080564379666 37.9681440521666 32.36308618901626 5 13.414163524013741 37.75717400368277 35.46365510503681 13.36500736726668 6 31.604157980401077 37.16065074279731 18.24594775705333 12.989243519748289 7 28.216515192112944 31.83512094978781 22.07674716194544 17.8716166961538 8 25.236041778003255 36.99817264333791 20.109875360484274 17.655910218174565 9 25.965817360694583 16.40682460818052 19.9992414748733 37.6281165562516 10-11 24.77195705288646 26.11833335016201 28.824292352055608 20.285417244895925 12-13 25.728396472479325 23.468118316603576 28.62349954895039 22.179985661966704 14-15 22.616086414173818 25.179204496058926 25.69909209458569 26.505616995181562 16-17 22.621289806478973 28.341014293031247 26.360538971812225 22.677156928677558 18-19 22.68657605942477 27.695184543688768 27.670033879822064 21.9482055170644 20-21 23.494342020839746 26.85176286081927 27.466142355446483 22.187752762894497 22-23 23.188385807850974 26.743257782203173 27.29170382915965 22.776652580786205 24-25 23.010753549003717 26.88118135082607 27.36720949652551 22.740855603644704 26-27 22.941420288655078 27.01334798097187 27.359159406918494 22.686072323454557 28-29 22.886403473495537 27.04181213081174 27.348862518864152 22.722921876828572 30-31 23.104906524254787 26.929453027988536 27.280073335037848 22.685567112718825 32-33 22.9004821753123 27.043703688213277 27.274909303967405 22.78090483250702 34-35 22.961108704905538 27.040983812990465 27.29735922997829 22.70054825212571 36-37 22.98593043988715 26.966205551551113 27.299294375570298 22.748569632991437 38-39 22.814835787516426 27.077183423701662 27.366560627458554 22.74142016132336 40-41 23.083456087169182 26.93029576062657 27.256947246772462 22.72930090543179 42-43 23.017504461843462 26.969726451913367 27.145495172915375 22.867273913327793 44-45 22.98047364354653 27.06124168993594 27.077714030634947 22.88057063588258 46-47 23.06854429960922 26.99986511369783 26.873131852368925 23.058458734324024 48-49 22.934399594433025 27.02966234393205 26.977651745129133 23.05828631650579 50-51 22.90063464468806 27.165191768219866 26.972014215212543 22.962159371879533 52-53 23.127931100880588 27.01072900672169 26.880684906965207 22.980654985432516 54-55 23.04891528185978 26.967274440172805 26.89618441361652 23.087625864350894 56-57 23.0500076384847 27.151925188646647 26.840883357433576 22.95718381543507 58-59 22.989817154312977 27.15005869416825 26.909719739060563 22.950404412458212 60-61 23.079349020521644 27.193184653456083 26.80629957427833 22.921166751743943 62-63 23.071990568335448 27.2813368113773 26.733403694303938 22.913268925983317 64-65 23.02045638126442 27.19571959786451 26.783577604875052 23.000246415996017 66-67 23.07622257480027 27.232908289828785 26.647461835272228 23.04340730009872 68-69 23.006365303321953 27.169083322051478 26.77132862000493 23.053222754621636 70-71 22.95592767858101 27.01035039358281 26.83400487386371 23.199717053972474 72-73 23.052581537505567 27.010522296713045 26.76251651712353 23.174379648657855 74-75 22.931120134615472 27.145880884693852 26.747115869570813 23.175883111119862 76-77 23.025942259580763 27.059490767508677 26.717114951542225 23.197452021368335 78-79 23.010697742191226 27.054336908040753 26.666053200547402 23.268912149220615 80-81 23.029144775786108 27.101015588038813 26.64372704390365 23.226112592271434 82-83 23.061151308012086 27.088372987884284 26.740230194073007 23.110245510030627 84-85 23.11721497821555 27.034987806112554 26.716611797197924 23.131185418473972 86-87 23.024295806104345 27.022517906704905 26.795498985137556 23.15768730205319 88-89 23.03335220354633 27.035127606016474 26.753375709808726 23.178144480628468 90-91 23.023112804359318 27.124286292010257 26.73522739952047 23.11737350410996 92-93 23.076408219996587 27.06928083791617 26.767542459340028 23.086768482747214 94-95 22.944214066397187 27.070304876957387 26.82389121236392 23.161589844281508 96-97 22.92498286618468 27.057294025132432 26.883988606876812 23.133734501806074 98-99 23.163250247192337 27.630412405365917 26.878873909771105 22.327463437670637 100-101 24.460956184376197 36.36952880534163 28.657667257936858 10.511847752345316 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 987.0 1 858.0 2 1071.0 3 1463.5 4 1862.0 5 2799.0 6 3588.0 7 4163.0 8 4523.0 9 4483.0 10 4232.0 11 3960.0 12 4351.0 13 5817.5 14 9262.0 15 14171.5 16 18532.5 17 21408.5 18 22514.5 19 22021.5 20 20615.5 21 19055.5 22 18431.5 23 19727.0 24 23295.0 25 29910.0 26 38859.0 27 49494.0 28 62962.0 29 79167.0 30 95988.5 31 114452.5 32 136133.0 33 158669.5 34 182163.5 35 206297.5 36 233121.5 37 256753.5 38 274886.0 39 293153.5 40 311590.0 41 327063.5 42 337489.5 43 347917.0 44 357676.0 45 365071.5 46 370918.0 47 375225.5 48 379725.5 49 379806.5 50 374224.5 51 366076.5 52 353009.5 53 336043.5 54 318169.5 55 297573.5 56 274695.5 57 250716.5 58 223997.5 59 195091.0 60 164828.0 61 134966.0 62 107584.5 63 83457.5 64 62349.0 65 46307.5 66 34964.0 67 26650.5 68 20376.0 69 15037.0 70 10955.5 71 7897.5 72 5555.0 73 3877.0 74 2679.5 75 1753.5 76 1110.0 77 692.5 78 447.5 79 295.5 80 197.0 81 138.5 82 98.0 83 70.0 84 51.5 85 36.5 86 24.0 87 17.0 88 13.5 89 11.5 90 9.0 91 6.0 92 3.5 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.02920801698497905 3 0.0 4 0.0 5 0.0 6 0.0 7 2.4627333039611344E-5 8 4.679193277526155E-4 9 4.3097832819319847E-4 10-11 0.0 12-13 0.0 14-15 0.0020686959753273525 16-17 3.078416629951418E-5 18-19 0.0 20-21 1.8470878474364545E-4 22-23 0.0019333871767295055 24-25 6.527710191344429E-4 26-27 0.014112131634711509 28-29 0.31586066855552014 30-31 0.3159679008744413 32-33 0.33314451474581636 34-35 0.21570046464146173 36-37 0.07340494508533223 38-39 0.06455199034884951 40-41 0.025832240167184335 42-43 0.010276734404656847 44-45 0.013559830142845664 46-47 0.009772283033683602 48-49 0.006684939711637862 50-51 0.007009663112670113 52-53 0.002860754356134975 54-55 0.001014595222839269 56-57 0.003581586244904356 58-59 0.004145628465874948 60-61 0.0028288442369213624 62-63 0.0021107845630912447 64-65 7.27895993082419E-4 66-67 0.008484743888908346 68-69 0.012783651427467542 70-71 0.013420376881765814 72-73 0.011722508023854631 74-75 0.011850148997640192 76-77 0.010397861886970568 78-79 0.002932757912782573 80-81 0.002452310615007276 82-83 0.0020067300310254795 84-85 8.066073401590597E-6 86-87 0.0029260268535705822 88-89 0.0 90-91 0.009213172362805137 92-93 0.019511439703241516 94-95 0.0013901847051531193 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 103.0 20-21 336.0 22-23 790.0 24-25 2102.0 26-27 3154.0 28-29 6167.0 30-31 18525.0 32-33 24346.0 34-35 34022.0 36-37 53178.0 38-39 62329.0 40-41 61462.0 42-43 69538.0 44-45 79712.0 46-47 79557.0 48-49 75541.0 50-51 70191.0 52-53 69291.0 54-55 75798.0 56-57 78733.0 58-59 78412.0 60-61 76587.0 62-63 75233.0 64-65 80440.0 66-67 84049.0 68-69 82802.0 70-71 80197.0 72-73 76192.0 74-75 77203.0 76-77 79838.0 78-79 82856.0 80-81 83314.0 82-83 80497.0 84-85 80239.0 86-87 83930.0 88-89 88998.0 90-91 91971.0 92-93 93846.0 94-95 105115.0 96-97 160299.0 98-99 686142.0 100-101 4828023.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.56028120108485 #Duplication Level Percentage of deduplicated Percentage of total 1 90.58160379770162 78.40769096374306 2 6.7449314262409255 11.676863218748977 3 1.5268260781246359 3.96487484002854 4 0.5309541964373807 1.838381781940629 5 0.25615122454904665 1.1086261013483856 6 0.11878289599337402 0.6169128527439403 7 0.06892610101701102 0.4176383880288798 8 0.04416599719523519 0.3058416909396706 9 0.026969935121023823 0.21010726512457528 >10 0.09833077361747866 1.2731378201563495 >50 0.0020729358488293186 0.11792747890866115 >100 2.1874821261717913E-4 0.023404291902544068 >500 6.588994085345904E-5 0.03859330638575902 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 6.156833259902835E-5 0.0 0.0 0.0 5 0.0 6.156833259902835E-5 0.0 0.0 0.0 6 3.694099955941701E-5 6.156833259902835E-5 0.0 1.231366651980567E-5 0.0 7 3.694099955941701E-5 6.156833259902835E-5 0.0 1.231366651980567E-5 0.0 8 3.694099955941701E-5 6.156833259902835E-5 0.0 1.231366651980567E-5 1.231366651980567E-5 9 3.694099955941701E-5 1.600776647574737E-4 0.0 8.619566563863969E-5 2.462733303961134E-5 10-11 8.003883237873685E-5 1.600776647574737E-4 0.0 9.850933215844536E-5 2.462733303961134E-5 12-13 9.850933215844536E-5 1.600776647574737E-4 0.0 9.850933215844536E-5 2.462733303961134E-5 14-15 1.1082299867825102E-4 1.908618310569879E-4 0.0 1.1082299867825102E-4 4.9254666079222675E-5 16-17 1.8470499779708505E-4 1.9701866431689073E-4 0.0 1.231366651980567E-4 7.388199911883402E-5 18-19 1.8470499779708505E-4 2.278028306164049E-4 0.0 1.4776399823766804E-4 8.619566563863969E-5 20-21 1.8470499779708505E-4 2.5858699691591906E-4 0.0 1.7854816453718222E-4 9.850933215844536E-5 22-23 1.8470499779708505E-4 3.1399849625504456E-4 0.0 1.8470499779708505E-4 9.850933215844536E-5 24-25 1.908618310569879E-4 3.324689960347531E-4 0.0 2.278028306164049E-4 9.850933215844536E-5 26-27 2.0317549757679356E-4 3.4478266255455876E-4 0.0 3.4478266255455876E-4 9.850933215844536E-5 28-29 2.093323308366964E-4 3.4478266255455876E-4 0.0 8.188588235670772E-4 9.850933215844536E-5 30-31 2.093323308366964E-4 4.925466607922268E-4 0.0 0.002314969305723466 1.1082299867825102E-4 32-33 2.2164599735650207E-4 5.048603273120325E-4 0.0 0.004962407607481685 1.3545033171786237E-4 34-35 2.5858699691591906E-4 6.34153825769992E-4 0.0 0.01031269571033725 1.4776399823766804E-4 36-37 2.955279964753361E-4 7.511336577081459E-4 0.0 0.019006144273320053 1.4776399823766804E-4 38-39 2.955279964753361E-4 7.696041574878545E-4 0.0 0.02985448447726885 1.4776399823766804E-4 40-41 2.955279964753361E-4 8.496429898665913E-4 0.0 0.04064741318187852 1.4776399823766804E-4 42-43 2.955279964753361E-4 8.557998231264941E-4 0.0 0.0497287422402352 1.4776399823766804E-4 44-45 3.0784166299514175E-4 9.912501548443565E-4 0.0 0.06204856559330077 1.4776399823766804E-4 46-47 3.201553295149474E-4 0.001126700486562219 0.0 0.07261369146729404 1.5392083149757087E-4 48-49 3.201553295149474E-4 0.0011328573198221216 0.0 0.08203364635494538 1.8470499779708505E-4 50-51 3.4478266255455876E-4 0.001348346483918721 0.0 0.0905608604199108 1.8470499779708505E-4 52-53 3.4478266255455876E-4 0.0013545033171786238 0.0 0.09868172348972265 1.8470499779708505E-4 54-55 3.4478266255455876E-4 0.0013545033171786238 0.0 0.10648858806327943 1.8470499779708505E-4 56-57 3.4478266255455876E-4 0.0013914443167380409 0.0 0.11363051464476673 1.8470499779708505E-4 58-59 3.4478266255455876E-4 0.0014283853162974577 0.0 0.11997820973572655 1.8470499779708505E-4 60-61 3.7556682885407297E-4 0.0014653263158568748 0.0 0.12651676665774336 1.908618310569879E-4 62-63 4.001941618936843E-4 0.001489953648896486 0.0 0.13237191508791096 2.093323308366964E-4 64-65 4.063509951535871E-4 0.0016623449801737656 0.0 0.13861494401345242 2.093323308366964E-4 66-67 4.063509951535871E-4 0.0016685018134336683 0.0 0.1450303642702712 2.093323308366964E-4 68-69 4.063509951535871E-4 0.0017362269792925997 0.0 0.15124876586277305 2.093323308366964E-4 70-71 4.2482149493329566E-4 0.0017731679788520166 0.0 0.15757799045395315 2.093323308366964E-4 72-73 4.49448827972907E-4 0.0017854816453718222 0.0 0.1628790238907295 2.3395966387630774E-4 74-75 4.556056612328098E-4 0.0018162658116713365 0.0 0.16672088784490888 2.4011649713621058E-4 76-77 4.8023299427242116E-4 0.001902461477309976 0.0 0.170008636805697 2.462733303961134E-4 78-79 5.048603273120325E-4 0.0019332456436094902 0.0 0.17341952243168318 2.462733303961134E-4 80-81 5.048603273120325E-4 0.0019332456436094902 0.0 0.1747924962486415 2.5243016365601625E-4 82-83 5.048603273120325E-4 0.0019578729766491013 0.0 0.1754697479072308 2.7090066343572473E-4 84-85 5.110171605719353E-4 0.00197634347642881 0.0 0.1759315104017235 2.770574966956276E-4 86-87 5.171739938318381E-4 0.002007127642728324 0.0 0.1760731175667013 2.832143299555304E-4 88-89 5.23330827091741E-4 0.002093323308366964 0.0 0.17618394056537953 2.832143299555304E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7365 0.0 44.35227 1 GTATCAA 12700 0.0 33.622208 1 TCAACGC 14645 0.0 28.43241 4 ATCAACG 15085 0.0 27.658743 3 CAACGCA 15115 0.0 27.576075 5 AACGCAG 15670 0.0 26.626173 6 TATCAAC 15885 0.0 26.59025 2 GTACATG 23690 0.0 22.933916 1 TACATGG 23650 0.0 22.56452 2 ACGCAGA 18940 0.0 22.029152 7 CGCAGAG 19645 0.0 21.217224 8 ACATGGG 24135 0.0 21.165796 3 CATGGGG 17655 0.0 19.067684 4 GCAGAGT 24135 0.0 17.201212 9 GAGTACT 10625 0.0 16.672224 12-13 AGAGTAC 20730 0.0 16.543707 10-11 CAGAGTA 22945 0.0 15.952857 10-11 GTGGTAT 4610 0.0 15.847375 1 TATACTG 3775 0.0 15.789293 5 ATGGGGG 11295 0.0 15.645418 5 >>END_MODULE