##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139657_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8716850 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.94907736166161 34.0 31.0 34.0 31.0 34.0 2 33.061645204402964 34.0 33.0 34.0 31.0 34.0 3 33.122513293219455 34.0 33.0 34.0 31.0 34.0 4 36.48690031376013 37.0 37.0 37.0 35.0 37.0 5 36.44880547445465 37.0 37.0 37.0 35.0 37.0 6 36.48031077740239 37.0 37.0 37.0 35.0 37.0 7 36.43802508933847 37.0 37.0 37.0 35.0 37.0 8 36.42230369915738 37.0 37.0 37.0 35.0 37.0 9 38.21783993070891 39.0 39.0 39.0 37.0 39.0 10-11 38.16960754171518 39.0 39.0 39.0 37.0 39.0 12-13 38.1424440021338 39.0 39.0 39.0 37.0 39.0 14-15 39.619513815197 41.0 40.0 41.0 37.0 41.0 16-17 39.59594148115431 41.0 40.0 41.0 37.0 41.0 18-19 39.59832858199923 41.0 40.0 41.0 37.0 41.0 20-21 39.571925402901016 41.0 40.0 41.0 37.0 41.0 22-23 39.49275233182347 41.0 39.0 41.0 37.0 41.0 24-25 39.33936561763157 41.0 39.0 41.0 36.0 41.0 26-27 39.34818715750385 40.5 39.0 41.0 36.5 41.0 28-29 39.27776180353866 41.0 39.0 41.0 36.0 41.0 30-31 39.198159001388206 41.0 39.0 41.0 36.0 41.0 32-33 39.010846088557884 40.0 39.0 41.0 35.0 41.0 34-35 38.93391832860774 40.0 38.5 41.0 35.0 41.0 36-37 39.131762167134966 40.5 39.0 41.0 35.0 41.0 38-39 39.20574777636212 41.0 39.0 41.0 35.0 41.0 40-41 39.18193171386939 41.0 39.0 41.0 35.0 41.0 42-43 39.036964214722815 41.0 39.0 41.0 35.0 41.0 44-45 39.05884511487358 40.5 39.0 41.0 35.0 41.0 46-47 39.012896575261884 40.0 39.0 41.0 35.0 41.0 48-49 38.94476510079677 40.0 39.0 41.0 35.0 41.0 50-51 38.8680097597677 40.0 38.0 41.0 35.0 41.0 52-53 38.74883791239888 40.0 38.0 41.0 35.0 41.0 54-55 38.60777741115276 40.0 38.0 41.0 35.0 41.0 56-57 38.456851898221515 40.0 37.5 41.0 34.5 41.0 58-59 38.29244483249446 40.0 37.0 41.0 34.0 41.0 60-61 38.10113076642651 40.0 37.0 41.0 34.0 41.0 62-63 37.86227642651319 39.0 36.0 41.0 34.0 41.0 64-65 37.57906768008801 39.0 35.5 41.0 33.5 41.0 66-67 37.25084002100587 38.5 35.0 40.0 33.0 41.0 68-69 36.90968956120432 37.5 35.0 40.0 33.0 41.0 70-71 36.54562166672994 37.0 35.0 39.5 32.5 41.0 72-73 36.20056894099873 36.5 35.0 39.0 32.0 41.0 74-75 35.85692342540665 36.0 35.0 39.0 32.0 40.0 76-77 34.99679392635285 35.0 34.0 37.0 30.5 39.0 78-79 35.220213958163114 35.0 34.0 37.0 32.0 39.0 80-81 35.00629051461998 35.0 34.0 37.0 32.0 39.0 82-83 34.74548361196593 35.0 34.0 36.5 31.5 38.5 84-85 34.4906271034624 35.0 34.0 36.0 31.0 37.0 86-87 34.281384347144126 35.0 34.0 36.0 31.0 37.0 88-89 34.08986767277514 35.0 34.0 35.0 31.0 36.5 90-91 33.900390102141415 35.0 34.0 35.0 31.0 36.0 92-93 33.77125116579843 35.0 34.0 35.0 31.0 36.0 94-95 33.698280965346854 35.0 34.0 35.0 31.0 36.0 96-97 33.67212292145634 35.0 34.0 35.0 31.0 35.5 98-99 33.69341378055722 35.0 34.0 35.0 31.0 35.0 100-101 32.279128577916175 34.0 31.5 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 6 1.0 7 0.0 8 0.0 9 0.0 10 1.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 1.0 17 0.0 18 0.0 19 5.0 20 31.0 21 147.0 22 640.0 23 2181.0 24 5429.0 25 11551.0 26 20654.0 27 33678.0 28 49565.0 29 68362.0 30 90909.0 31 117243.0 32 152124.0 33 204245.0 34 298081.0 35 456605.0 36 840472.0 37 1914742.0 38 2833560.0 39 1519145.0 40 97478.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.75801803587719 20.87773011528938 14.777853187298895 24.58639866153454 2 13.826138675533 21.463883613085734 41.38415730534352 23.325820406037746 3 17.0044607867431 26.340782815072604 31.09048132994862 25.564275068235677 4 11.894666512482493 18.36667336633609 38.977747461008846 30.760912660172572 5 13.029732765788735 37.93419364430813 35.77735897195867 13.258714617944467 6 29.996106390750416 38.18184050014409 18.674995824178648 13.147057284926845 7 26.50196326857402 32.762327545036094 23.173911282768607 17.561797903621276 8 24.48690705400484 36.858865410707814 21.043335547832786 17.61089198745456 9 25.504345694268842 16.70623207697238 21.25808024032703 36.53134198843175 10-11 23.98371682337753 26.783185828779075 29.153686776397826 20.079410571445568 12-13 24.863216054333396 24.437018468485572 29.147011724075984 21.55275375310505 14-15 22.014745969426226 25.859423425436752 26.700534274088312 25.425296331048713 16-17 21.626160518733524 29.035084997204553 27.36981514700473 21.968939337057193 18-19 21.661856060388786 28.20104166069165 29.086826089699834 21.05027618921973 20-21 22.405297768907907 27.305666322172723 29.01975936743133 21.26927654148804 22-23 22.18126680175186 27.176504859292372 28.849167982353336 21.793060356602428 24-25 21.986907712251952 27.350402439104855 28.88541135653692 21.777278492106273 26-27 21.895643498125537 27.503732536461932 28.843215330403023 21.757408635009508 28-29 21.861757521893175 27.483646255080114 28.885902729426938 21.768693493599773 30-31 22.055942990395106 27.43950290481449 28.764800544991907 21.739753559798494 32-33 21.91475406575492 27.5749935330216 28.690424443085327 21.819827958138152 34-35 22.005822588168307 27.540798005458523 28.71517039074119 21.738209015631977 36-37 21.989236528617457 27.475376695054372 28.681642428156103 21.853744348172068 38-39 21.887409867634318 27.59458635022167 28.72954535672112 21.788458425422892 40-41 22.10832902915215 27.490884692016266 28.57659207511845 21.824194203713137 42-43 22.047710697280998 27.635354176752617 28.302141894618092 22.014793231348293 44-45 22.06870695866356 27.70782517527713 28.20189842663494 22.02156943942437 46-47 22.164705862433884 27.683279176674468 27.93566893990192 22.21634602098973 48-49 22.11520861251155 27.793242409563966 27.91175312490781 22.179795853016664 50-51 22.127925755398696 27.878363391924193 27.818417741743147 22.175293110933964 52-53 22.302430513160115 27.799831174233848 27.679186305788388 22.218552006817653 54-55 22.271439590799122 27.739062379573543 27.694316215831783 22.295181813795555 56-57 22.264263928159394 27.851266452116118 27.675534819252384 22.2089348004721 58-59 22.178755196171593 27.877993559070536 27.6914713597183 22.25177988503957 60-61 22.303745002795356 27.87523761162899 27.64515392105412 22.17586346452154 62-63 22.29577499768224 27.960478624423533 27.600449274395583 22.14329710349864 64-65 22.250503955683794 27.82219284526977 27.632698814348156 22.29460438469828 66-67 22.33105887608868 27.877243888513647 27.454405819123863 22.337291416273814 68-69 22.26060288524159 27.86831705453435 27.557567699971646 22.313512360252414 70-71 22.246925301815125 27.68947122843682 27.625319219394722 22.438284250353334 72-73 22.343720159295945 27.713310547509156 27.48201269503739 22.460956598157512 74-75 22.18376855018688 27.844145386955745 27.515344370053363 22.456741692804012 76-77 22.29904883666719 27.72483834847795 27.51046492027674 22.465647894578122 78-79 22.256102276440668 27.73089225561285 27.456855781401917 22.556149686544565 80-81 22.301399149881806 27.75502867044824 27.44396120155106 22.499610978118895 82-83 22.33671511258928 27.70944474305311 27.530783115757007 22.423057028600606 84-85 22.365094066532095 27.65771523679742 27.504692925503914 22.47249777116657 86-87 22.309091157993894 27.66545716633571 27.57003650700448 22.455415168665912 88-89 22.326294308561888 27.624562228200748 27.556217064061432 22.492926399175932 90-91 22.37357029575994 27.620246932383736 27.57570209421541 22.430480677640915 92-93 22.40366438584942 27.554124732845697 27.602537651535293 22.439673229769593 94-95 22.271831765651743 27.5278312411023 27.654495516379207 22.54584147686675 96-97 22.316464455752165 27.556136205999998 27.66953430192678 22.457865036321056 98-99 22.490400557048254 28.079813855307194 27.70143911039374 21.72834647725081 100-101 20.294656704471137 31.825833526124864 25.82041341243707 22.05909635696693 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2070.0 1 1751.5 2 2113.5 3 2968.5 4 4051.5 5 6174.5 6 7879.5 7 9576.5 8 10986.5 9 11156.0 10 10351.5 11 9666.0 12 10795.0 13 14426.5 14 23052.0 15 34782.5 16 44276.5 17 49148.5 18 49199.5 19 46234.0 20 42289.0 21 38631.0 22 37073.0 23 39649.0 24 46616.0 25 57988.5 26 72976.0 27 89851.0 28 109082.0 29 130106.0 30 149720.5 31 169464.5 32 190978.5 33 213099.5 34 233259.5 35 252413.0 36 274342.0 37 292524.5 38 306061.0 39 319308.0 40 330711.5 41 340268.0 42 346356.5 43 351861.0 44 357731.0 45 361579.0 46 362558.5 47 360679.5 48 358690.0 49 355889.5 50 349955.0 51 340538.5 52 326821.0 53 309550.5 54 291700.0 55 271623.0 56 249724.5 57 226275.0 58 200921.5 59 174061.0 60 146564.5 61 119972.0 62 95041.5 63 73241.0 64 54356.5 65 40265.0 66 30383.5 67 22936.5 68 17460.0 69 12702.0 70 9009.5 71 6397.0 72 4447.5 73 3057.5 74 2042.5 75 1363.0 76 878.0 77 526.5 78 342.5 79 222.5 80 162.0 81 117.5 82 84.0 83 56.0 84 40.5 85 30.5 86 19.5 87 13.0 88 8.5 89 5.0 90 2.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 2.2944068097994114E-5 2 0.029104550382305534 3 2.2944068097994114E-5 4 2.2944068097994114E-5 5 2.2944068097994114E-5 6 2.2944068097994114E-5 7 1.032483064409735E-4 8 6.539059407928323E-4 9 6.997940769888205E-4 10-11 5.736017024498529E-6 12-13 1.1472034048997057E-5 14-15 0.0018699415499865205 16-17 5.162415322048675E-5 18-19 0.0 20-21 2.5238988845800964E-4 22-23 0.00194466582466652 24-25 7.401256056264234E-4 26-27 0.014439592029873199 28-29 0.3118683209373667 30-31 0.3121724667069504 32-33 0.3300326609587786 34-35 0.21386077757611965 36-37 0.07250861333796088 38-39 0.06413691893815819 40-41 0.02622439252218745 42-43 0.010068137215546958 44-45 0.013689968173217349 46-47 0.010012592528054457 48-49 0.007291871572431034 50-51 0.007616652640153033 52-53 0.0033925558005527628 54-55 0.001660486835942334 56-57 0.004021475437605765 58-59 0.0046144929415809655 60-61 0.003646262542241243 62-63 0.0024509767272283293 64-65 0.0010631240398661014 66-67 0.008088387243870777 68-69 0.01148384319073424 70-71 0.011890376148934682 72-73 0.010016748633182491 74-75 0.010534016579049085 76-77 0.009248050383154969 78-79 0.002238740723173989 80-81 0.0016360799495830176 82-83 0.0015251457869510116 84-85 0.0 86-87 0.0025972688275351344 88-89 0.0 90-91 0.008937049656482154 92-93 0.01838673945882211 94-95 0.001684232823331967 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 99.0 20-21 414.0 22-23 960.0 24-25 2453.0 26-27 4158.0 28-29 7691.0 30-31 19182.0 32-33 24842.0 34-35 35730.0 36-37 51473.0 38-39 59161.0 40-41 61185.0 42-43 72237.0 44-45 85954.0 46-47 84740.0 48-49 75569.0 50-51 67635.0 52-53 66289.0 54-55 71217.0 56-57 73485.0 58-59 72984.0 60-61 71120.0 62-63 70879.0 64-65 75812.0 66-67 79238.0 68-69 78822.0 70-71 77215.0 72-73 74081.0 74-75 75051.0 76-77 77127.0 78-79 81039.0 80-81 81854.0 82-83 79053.0 84-85 80426.0 86-87 84157.0 88-89 90628.0 90-91 96234.0 92-93 97294.0 94-95 108684.0 96-97 168853.0 98-99 745242.0 100-101 5386583.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.93159229089217 #Duplication Level Percentage of deduplicated Percentage of total 1 90.86773424003852 78.99276825352169 2 6.568013117735721 11.419356770244665 3 1.482412030155373 3.8660531463774186 4 0.5075689115555675 1.7649509471552198 5 0.22461234042559514 0.9762954200690455 6 0.11174563431859133 0.5828535553722546 7 0.06924031727532028 0.42134197220291114 8 0.04378587462185736 0.3045100640581941 9 0.02726515179260896 0.21331827534459327 >10 0.09494211466907897 1.2639800418550324 >50 0.0023271610389717836 0.13121612199879215 >100 3.3281905297031036E-4 0.05256214465240522 >500 2.0287319771687513E-5 0.010793287147731843 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.2944068097994114E-5 0.0 0.0 0.0 3 0.0 3.441610214699117E-5 0.0 0.0 0.0 4 0.0 6.883220429398235E-5 0.0 0.0 0.0 5 0.0 6.883220429398235E-5 0.0 1.1472034048997057E-5 1.1472034048997057E-5 6 1.1472034048997057E-5 6.883220429398235E-5 0.0 1.1472034048997057E-5 1.1472034048997057E-5 7 1.1472034048997057E-5 8.030423834297941E-5 0.0 1.1472034048997057E-5 2.2944068097994114E-5 8 2.2944068097994114E-5 1.0324830644097352E-4 0.0 1.1472034048997057E-5 2.2944068097994114E-5 9 2.2944068097994114E-5 1.6060847668595882E-4 0.0 4.588813619598823E-5 3.441610214699117E-5 10-11 3.441610214699117E-5 1.6060847668595882E-4 0.0 1.0324830644097352E-4 3.441610214699117E-5 12-13 4.588813619598823E-5 1.6634449371045736E-4 0.0 1.204563575144691E-4 3.441610214699117E-5 14-15 5.162415322048676E-5 2.0649661288194704E-4 0.0 1.2619237453896764E-4 3.441610214699117E-5 16-17 6.309618726948381E-5 2.1223262990644555E-4 0.0 1.376644085879647E-4 3.441610214699117E-5 18-19 7.456822131848088E-5 2.409127150289382E-4 0.0 1.4913644263696174E-4 4.01521191714897E-5 20-21 8.604025536747793E-5 2.753288171759294E-4 0.0 1.7208051073495587E-4 5.7360170244985284E-5 22-23 9.177627239197646E-5 3.04008902298422E-4 0.0 2.1223262990644555E-4 6.309618726948381E-5 24-25 9.751228941647498E-5 3.326889874209147E-4 0.0 2.8106483420042795E-4 8.030423834297941E-5 26-27 1.0324830644097352E-4 3.4416102146991173E-4 0.0 3.326889874209147E-4 9.177627239197646E-5 28-29 1.0324830644097352E-4 3.5563305551890875E-4 0.0 8.604025536747793E-4 9.177627239197646E-5 30-31 1.0324830644097352E-4 3.900491576658999E-4 0.0 0.0022944068097994113 9.177627239197646E-5 32-33 1.0324830644097352E-4 4.072572087393955E-4 0.0 0.004915766589995239 9.177627239197646E-5 34-35 1.0324830644097352E-4 4.6461737898438084E-4 0.0 0.009791381060818989 1.2619237453896764E-4 36-37 1.0898432346547204E-4 5.162415322048676E-4 0.0 0.016605769285923243 1.2619237453896764E-4 38-39 1.3192839156346618E-4 5.506576343518588E-4 0.0 0.025949741018831345 1.376644085879647E-4 40-41 1.434004256124632E-4 6.653779748418293E-4 0.0 0.034754527151436586 1.376644085879647E-4 42-43 1.4913644263696174E-4 6.768500088908263E-4 0.0 0.04228018148757866 1.376644085879647E-4 44-45 1.6060847668595882E-4 7.456822131848087E-4 0.0 0.05260501213167601 1.376644085879647E-4 46-47 1.6634449371045736E-4 8.03042383429794E-4 0.0 0.062287408869029524 1.4913644263696174E-4 48-49 1.7208051073495587E-4 8.087784004542926E-4 0.0 0.07102909881436528 1.7208051073495587E-4 50-51 1.9502457883294996E-4 8.948186558217705E-4 0.0 0.07886449806983027 1.7208051073495587E-4 52-53 1.9502457883294996E-4 8.948186558217705E-4 0.0 0.08547238968205258 1.7208051073495587E-4 54-55 2.0649661288194704E-4 9.120267068952661E-4 0.0 0.09252195460516127 1.7208051073495587E-4 56-57 2.179686469309441E-4 9.177627239197645E-4 0.0 0.09886025341723215 1.7208051073495587E-4 58-59 2.2370466395544263E-4 9.407067920177587E-4 0.0 0.1048601272248576 1.7208051073495587E-4 60-61 2.2944068097994114E-4 9.693868771402513E-4 0.0 0.11050436797696415 1.7208051073495587E-4 62-63 2.2944068097994114E-4 0.0010038029792872427 0.0 0.11567825533306184 1.7208051073495587E-4 64-65 2.2944068097994114E-4 0.0010668991665567264 0.0 0.12116762362550693 1.7208051073495587E-4 66-67 2.3517669800443967E-4 0.0010783712006057235 0.0 0.126725824122246 1.7208051073495587E-4 68-69 2.638567831269323E-4 0.0010955792516792189 0.0 0.132444633095671 1.7781652775945438E-4 70-71 2.638567831269323E-4 0.0011013152687037175 0.0 0.1380372496945571 1.9502457883294996E-4 72-73 2.638567831269323E-4 0.0011070512857282162 0.0 0.14253428704176394 1.9502457883294996E-4 74-75 2.638567831269323E-4 0.0011185233197772131 0.0 0.1465839150610599 1.9502457883294996E-4 76-77 2.638567831269323E-4 0.0011414673878752074 0.0 0.14979608459477908 1.9502457883294996E-4 78-79 2.695928001514308E-4 0.0011472034048997058 0.0 0.15299678209444925 2.0649661288194704E-4 80-81 2.753288171759294E-4 0.0011529394219242043 0.0 0.1543390100781819 2.2370466395544263E-4 82-83 2.753288171759294E-4 0.0011701474729976999 0.0 0.1547806833890683 2.409127150289382E-4 84-85 2.753288171759294E-4 0.0011701474729976999 0.0 0.1551477884786362 2.409127150289382E-4 86-87 2.753288171759294E-4 0.001193091541095694 0.0 0.15533134102342017 2.5238474907793523E-4 88-89 2.753288171759294E-4 0.0012848678134876705 0.0 0.15536575712556716 2.695928001514308E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10220 0.0 49.14928 1 GTATCAA 18690 0.0 38.062447 1 TCAACGC 22880 0.0 30.41472 4 ATCAACG 23245 0.0 29.955416 3 CAACGCA 23585 0.0 29.50557 5 TATCAAC 24300 0.0 28.785688 2 AACGCAG 24335 0.0 28.596212 6 ACGCAGA 28085 0.0 24.79308 7 CGCAGAG 28800 0.0 24.162807 8 GTACATG 24865 0.0 21.978754 1 TACATGG 25040 0.0 21.384016 2 GTGGTAT 5065 0.0 20.975441 1 GCAGAGT 33725 0.0 20.55981 9 ACATGGG 25400 0.0 20.238468 3 TGGTATC 5100 0.0 19.331736 2 GAGTACT 19655 0.0 19.151886 12-13 AGAGTAC 30155 0.0 18.950201 10-11 CATGGGG 18325 0.0 18.523743 4 CAGAGTA 32860 0.0 18.081972 10-11 GTACTTT 22005 0.0 17.126331 14-15 >>END_MODULE