##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139656_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10696242 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.60131231137067 34.0 31.0 34.0 31.0 34.0 2 32.73375471497373 34.0 31.0 34.0 31.0 34.0 3 32.807076541461946 34.0 31.0 34.0 31.0 34.0 4 36.2832954789168 37.0 37.0 37.0 35.0 37.0 5 36.21610215999227 37.0 37.0 37.0 35.0 37.0 6 36.24290381612533 37.0 37.0 37.0 35.0 37.0 7 36.190234476744266 37.0 37.0 37.0 35.0 37.0 8 36.16919362893996 37.0 37.0 37.0 35.0 37.0 9 37.89250102980093 39.0 38.0 39.0 35.0 39.0 10-11 37.83064687579058 39.0 38.0 39.0 35.0 39.0 12-13 37.80024661932668 39.0 38.0 39.0 35.0 39.0 14-15 39.187190229989184 40.0 39.0 41.0 36.0 41.0 16-17 39.15015217494144 40.0 39.0 41.0 36.0 41.0 18-19 39.029320297727 40.0 38.5 41.0 36.0 41.0 20-21 39.08940949775493 40.0 39.0 41.0 36.0 41.0 22-23 39.00516790385793 40.0 38.5 41.0 35.0 41.0 24-25 38.89794203530409 40.0 38.0 41.0 35.0 41.0 26-27 38.84837269577908 40.0 38.0 41.0 35.0 41.0 28-29 38.73290937312428 40.0 38.0 41.0 35.0 41.0 30-31 38.6732390297274 40.0 38.0 41.0 35.0 41.0 32-33 38.55149452746754 40.0 38.0 41.0 34.5 41.0 34-35 38.325758213967404 40.0 38.0 41.0 34.0 41.0 36-37 38.5976951319006 40.0 38.0 41.0 34.5 41.0 38-39 38.6972615668538 40.0 38.0 41.0 35.0 41.0 40-41 38.69227573675769 40.0 38.0 41.0 35.0 41.0 42-43 38.62338767465808 40.0 38.0 41.0 34.5 41.0 44-45 38.55223436826583 40.0 38.0 41.0 34.0 41.0 46-47 38.48293269006723 40.0 38.0 41.0 34.0 41.0 48-49 38.414998131476125 40.0 38.0 41.0 34.0 41.0 50-51 38.33465499230216 40.0 38.0 41.0 34.0 41.0 52-53 38.23592683767313 40.0 37.5 41.0 33.5 41.0 54-55 38.11429980961505 40.0 37.0 41.0 33.0 41.0 56-57 37.96454265578889 40.0 37.0 41.0 33.0 41.0 58-59 37.79250707462479 40.0 36.5 41.0 33.0 41.0 60-61 37.62118297496963 39.0 36.0 41.0 33.0 41.0 62-63 37.40249645252857 39.0 35.5 41.0 33.0 41.0 64-65 37.11586717911719 38.5 35.0 40.0 32.0 41.0 66-67 36.79371957807459 38.0 35.0 40.0 32.0 41.0 68-69 36.47199367321174 37.5 35.0 40.0 31.0 41.0 70-71 36.12984973829077 37.0 35.0 39.5 31.0 41.0 72-73 35.80797491045588 36.0 35.0 39.0 31.0 41.0 74-75 35.47673219682481 36.0 34.0 39.0 31.0 40.0 76-77 34.55233259495331 35.0 33.5 37.0 29.5 39.0 78-79 34.79235296764386 35.0 34.0 37.0 30.0 39.0 80-81 34.5942579438003 35.0 34.0 37.0 30.0 39.0 82-83 34.34660345782459 35.0 34.0 36.0 30.0 38.5 84-85 34.090489090105166 35.0 34.0 36.0 30.0 37.0 86-87 33.886102370631164 35.0 34.0 35.5 30.0 37.0 88-89 33.687634162178284 35.0 34.0 35.0 30.0 36.5 90-91 33.50940207906068 35.0 33.0 35.0 30.0 36.0 92-93 33.37687676617374 35.0 33.0 35.0 29.0 36.0 94-95 33.32273043922566 35.0 33.0 35.0 29.0 36.0 96-97 33.314671779083916 35.0 33.0 35.0 29.5 35.0 98-99 33.39164997042667 35.0 33.0 35.0 30.0 35.0 100-101 31.79804376173916 33.5 30.0 34.5 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 6.0 20 55.0 21 295.0 22 1326.0 23 4508.0 24 11234.0 25 23555.0 26 41946.0 27 65906.0 28 95031.0 29 128754.0 30 166329.0 31 209865.0 32 265081.0 33 346699.0 34 480700.0 35 692100.0 36 1159933.0 37 2263248.0 38 3026164.0 39 1615583.0 40 97923.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.312405235408846 21.286420034251282 14.864734735807211 24.53643999453266 2 13.771155401222778 21.875062816765958 41.27671342867489 23.077068353336372 3 16.86231817256214 26.656929436621272 31.387551541654336 25.093200849162255 4 11.838999155030336 18.68088811004837 39.208565026857094 30.271547708064194 5 12.758639903622226 38.245759585469365 36.02700836424606 12.968592146662349 6 29.593571274845875 38.67087150795578 18.796676440192734 12.938880777005608 7 26.129625713404764 33.00693832469385 23.45768728867578 17.405748673225606 8 24.21319562515508 37.13969822298336 21.22826876953607 17.418837382325496 9 25.35554889258313 16.76106241188819 21.43462647043122 36.44876222509746 10-11 23.760767439755814 26.973852987658347 29.44215555972736 19.823224012858475 12-13 24.64523521438651 24.606431866444307 29.40699640116594 21.34133651800324 14-15 21.798756958207793 26.120528439075592 26.899245627948893 25.181468974767725 16-17 21.416456682294445 29.208999523897784 27.602896627387256 21.771647166420514 18-19 21.44610930281706 28.401456268949126 29.289815293479105 20.86261913475471 20-21 22.194367903110788 27.57602835284738 29.161776760360425 21.067826983681407 22-23 21.913106246227798 27.481677211298912 28.99759373876521 21.607622803708082 24-25 21.708835088027104 27.623457583914195 29.072432520596802 21.5952748074619 26-27 21.68960586848322 27.77612858622551 28.979528456601393 21.554737088689873 28-29 21.677401077458246 27.80018581660065 28.97366621262991 21.548746893311193 30-31 21.855836832972003 27.70871562868873 28.90499950621 21.53044803212927 32-33 21.623415563267336 27.87362334143509 28.830777490931915 21.672183604365657 34-35 21.785038104288045 27.855137936691165 28.784470943448714 21.57535301557207 36-37 21.794276579871212 27.761610344055086 28.790198042658755 21.653915033414943 38-39 21.641698889930527 27.91313490526322 28.878433678143267 21.566732526662985 40-41 21.867627392522763 27.792348882821805 28.69903390951385 21.640989815141584 42-43 21.805869140205676 27.92536492600804 28.44952023671217 21.819245697074116 44-45 21.91354854089711 27.985243313204755 28.305139472176727 21.796068673721404 46-47 21.960002702888545 27.9413284796356 28.055561711253667 22.04310710622218 48-49 21.91513012280988 28.03534167840037 28.02389204216193 22.025636156627815 50-51 21.92249993898295 28.116839602324784 27.930603408508702 22.03005705018356 52-53 22.090126953372064 28.05898237464316 27.814173116469032 22.036717555515747 54-55 22.073237657429072 27.986840370473864 27.82397305532055 22.115948916776514 56-57 22.080542060627348 28.126643014642834 27.754650029635858 22.038164895093963 58-59 21.98411603764123 28.16088516163266 27.819544037700894 22.03545476302522 60-61 22.080295800840503 28.167332460051064 27.751912546764906 22.000459192343527 62-63 22.04875549585133 28.24096738935735 27.704302349176796 22.00597476561452 64-65 22.030932979524103 28.14332452511496 27.70817879761614 22.117563697744792 66-67 22.104640813213443 28.175483004675943 27.57571738039033 22.14415880172028 68-69 22.039129255758105 28.142086665011988 27.68163456175023 22.137149517479678 70-71 22.03445900204402 27.921826055279848 27.750364140674854 22.29335080200128 72-73 22.116587863602696 27.98588667998873 27.650298900984154 22.247226555424422 74-75 21.955243255077818 28.128278062148226 27.63817227926874 22.27830640350521 76-77 22.09943309795295 28.030498043047114 27.591239637510313 22.278829221489623 78-79 22.039582714404098 28.028894016364976 27.55715884314438 22.374364426086547 80-81 22.06507070677352 28.062700754667922 27.56030933669262 22.31191920186594 82-83 22.118162090717348 28.04853885652181 27.61456506472943 22.218733988031413 84-85 22.130822570349572 28.024978784634115 27.552687523268144 22.291511121748172 86-87 22.05390503387315 28.025265190394027 27.642910805549135 22.277918970183684 88-89 22.099775771660806 27.989000320398738 27.62707288081116 22.284151027129294 90-91 22.074082951269336 28.074755434644143 27.62908200988291 22.222079604203607 92-93 22.115271903448182 28.013854324035293 27.645857045964185 22.22501672655234 94-95 21.931267145169052 28.050412580599176 27.703771596193345 22.31454867803843 96-97 21.924323760708603 28.082162258021214 27.774247413152686 22.219266568117497 98-99 22.07874821219989 28.61294474613596 27.782535386063216 21.525771655600934 100-101 20.44990652118806 32.19911596062058 25.682917667053218 21.668059851138143 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3715.0 1 3154.5 2 3518.5 3 4647.0 4 5764.5 5 8110.0 6 10205.5 7 12146.0 8 13586.5 9 13753.0 10 12985.0 11 12240.5 12 13651.5 13 18246.5 14 29050.5 15 43795.0 16 55415.0 17 61536.0 18 62564.0 19 60042.5 20 55806.0 21 51987.5 22 50740.0 23 54506.0 24 64467.5 25 80925.0 26 102346.0 27 125566.0 28 150605.5 29 176705.0 30 201198.5 31 225436.5 32 251093.0 33 277684.0 34 303434.5 35 329209.5 36 357698.5 37 379176.0 38 394276.5 39 409010.0 40 421792.5 41 431723.0 42 436614.5 43 442338.0 44 447100.5 45 449119.5 46 451310.5 47 449373.0 48 445980.5 49 440067.0 50 429270.5 51 415179.5 52 395552.0 53 372574.5 54 349085.5 55 323632.5 56 294033.0 57 262967.0 58 232732.5 59 200556.5 60 167006.5 61 136239.0 62 108594.5 63 83518.0 64 61613.0 65 45336.0 66 34234.0 67 26034.0 68 19537.5 69 14029.5 70 10010.5 71 7092.0 72 4849.0 73 3209.0 74 2103.0 75 1400.5 76 944.5 77 605.0 78 398.5 79 265.0 80 178.0 81 121.0 82 81.0 83 50.0 84 33.0 85 25.5 86 22.5 87 20.5 88 17.0 89 11.0 90 7.5 91 5.0 92 2.5 93 1.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.004216434145749507 3 0.004898916834529361 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0029449595474747114 10-11 9.910022604200615E-4 12-13 0.0 14-15 5.702937536379599E-4 16-17 8.881624032066589E-5 18-19 3.272177274971901E-5 20-21 1.4024027272432344E-5 22-23 5.329557388673961E-4 24-25 0.004110166105419355 26-27 0.0208199242605676 28-29 0.3384156213774199 30-31 0.3310237494060739 32-33 0.34197115691884317 34-35 0.18247232814288672 36-37 0.04126437847905995 38-39 0.03787234014115776 40-41 0.014763783788932443 42-43 0.011827416932407573 44-45 0.01028639449131476 46-47 0.00638003598994661 48-49 0.01005501789001214 50-51 0.010794548651668725 52-53 0.0033577795356574207 54-55 0.004071259108861753 56-57 0.004317309978007268 58-59 0.005718030177075537 60-61 0.003925887134633478 62-63 0.002363490648491226 64-65 7.130273415504926E-4 66-67 0.006951245440654982 68-69 0.016168665271663964 70-71 0.013403366440306852 72-73 0.0141357698717226 74-75 0.007345614090448263 76-77 0.004598189062323948 78-79 0.0015108853960246887 80-81 0.001164847613014086 82-83 5.598452685042249E-4 84-85 9.250205477897682E-5 86-87 0.0 88-89 4.760259676608268E-4 90-91 0.0048179635351752615 92-93 0.01811796891072028 94-95 0.0016447858883254568 96-97 6.841791440987325E-6 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 181.0 20-21 680.0 22-23 1520.0 24-25 3496.0 26-27 5960.0 28-29 11005.0 30-31 26139.0 32-33 34199.0 34-35 49024.0 36-37 69205.0 38-39 80768.0 40-41 84175.0 42-43 98961.0 44-45 115447.0 46-47 114066.0 48-49 102480.0 50-51 93043.0 52-53 91588.0 54-55 99288.0 56-57 102242.0 58-59 101005.0 60-61 99912.0 62-63 99673.0 64-65 106623.0 66-67 110452.0 68-69 108445.0 70-71 106744.0 72-73 102850.0 74-75 104082.0 76-77 106409.0 78-79 111180.0 80-81 111730.0 82-83 108548.0 84-85 110012.0 86-87 116868.0 88-89 123642.0 90-91 131542.0 92-93 137471.0 94-95 158481.0 96-97 240634.0 98-99 920136.0 100-101 6196336.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.83435090603707 #Duplication Level Percentage of deduplicated Percentage of total 1 90.18962003435517 77.41367494110993 2 6.872991363665158 11.79877504965995 3 1.65839062226756 4.270406478329846 4 0.599124143590104 2.0570172790876775 5 0.27591578722636395 1.184152625065159 6 0.13965933315322027 0.7192540925505988 7 0.08356591413450505 0.5020978198323409 8 0.04605540456555265 0.31625086052793183 9 0.030997201728780583 0.23945622212640344 >10 0.10142651145048419 1.3135778759433863 >50 0.0018796364944526382 0.1036538866825893 >100 3.3968475908711205E-4 0.05990129474961239 >500 3.436260948889808E-5 0.02178157433455706 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.8698155856982295E-5 0.0 9.349077928491147E-6 0.0 3 0.0 1.8698155856982295E-5 0.0 9.349077928491147E-6 0.0 4 0.0 4.674538964245573E-5 0.0 9.349077928491147E-6 0.0 5 0.0 4.674538964245573E-5 0.0 9.349077928491147E-6 0.0 6 8.414170135642032E-5 4.674538964245573E-5 0.0 9.349077928491147E-6 0.0 7 8.414170135642032E-5 4.674538964245573E-5 0.0 1.8698155856982295E-5 0.0 8 8.414170135642032E-5 4.674538964245573E-5 0.0 1.8698155856982295E-5 9.349077928491147E-6 9 8.414170135642032E-5 8.414170135642032E-5 0.0 1.8698155856982295E-5 9.349077928491147E-6 10-11 8.414170135642032E-5 8.88162403206659E-5 0.0 2.804723378547344E-5 9.349077928491147E-6 12-13 8.414170135642032E-5 9.349077928491146E-5 0.0 2.804723378547344E-5 9.349077928491147E-6 14-15 1.0751439617764818E-4 1.215380130703849E-4 0.0 3.272177274971902E-5 3.739631171396459E-5 16-17 1.6828340271284064E-4 1.215380130703849E-4 0.0 3.739631171396459E-5 3.739631171396459E-5 18-19 1.6828340271284064E-4 1.589343247843495E-4 0.0 4.207085067821016E-5 3.739631171396459E-5 20-21 1.6828340271284064E-4 2.1502879235529637E-4 0.0 5.609446757094688E-5 3.739631171396459E-5 22-23 1.7295794167708622E-4 2.617741819977521E-4 0.0 6.076900653519245E-5 3.739631171396459E-5 24-25 1.776324806413318E-4 3.131941106044534E-4 0.0 8.88162403206659E-5 3.739631171396459E-5 26-27 1.776324806413318E-4 3.365668054256813E-4 0.0 1.3088709099887605E-4 3.739631171396459E-5 28-29 1.776324806413318E-4 3.365668054256813E-4 0.0 4.581048184960662E-4 5.14199286067013E-5 30-31 1.776324806413318E-4 3.7396311713964585E-4 0.0 0.001435083462023391 5.609446757094688E-5 32-33 1.776324806413318E-4 3.83312195068137E-4 0.0 0.0034965551452556887 5.609446757094688E-5 34-35 1.776324806413318E-4 4.6277935746031175E-4 0.0 0.006376071147230962 5.609446757094688E-5 36-37 1.776324806413318E-4 5.422465198524865E-4 0.0 0.010872977630835204 7.479262342792918E-5 38-39 1.776324806413318E-4 5.515955977809777E-4 0.0 0.01761366281727732 8.414170135642032E-5 40-41 1.776324806413318E-4 5.889919094949422E-4 0.0 0.024344998925790947 8.414170135642032E-5 42-43 2.1502879235529637E-4 6.030155263876789E-4 0.0 0.030922075248484466 8.414170135642032E-5 44-45 2.2437787028378752E-4 6.871572277440993E-4 0.0 0.0389061877994159 8.414170135642032E-5 46-47 2.3372694821227868E-4 7.572753122077829E-4 0.0 0.04773171736391155 8.88162403206659E-5 48-49 2.3372694821227868E-4 7.619498511720285E-4 0.0 0.05556157012902288 9.349077928491146E-5 50-51 2.3372694821227868E-4 8.507660914926944E-4 0.0 0.06399443842052191 1.0283985721340262E-4 52-53 2.3372694821227868E-4 8.694642473496767E-4 0.0 0.0715438188477785 1.0283985721340262E-4 54-55 2.3372694821227868E-4 8.694642473496767E-4 0.0 0.07940639338563955 1.0283985721340262E-4 56-57 2.3372694821227868E-4 8.694642473496767E-4 0.0 0.0866519287802202 1.0751439617764818E-4 58-59 2.5242510406926094E-4 8.694642473496767E-4 0.0 0.09322900510291371 1.1218893514189376E-4 60-61 2.5709964303350654E-4 8.975114811351501E-4 0.0 0.0996892179515011 1.1218893514189376E-4 62-63 2.7112325992624325E-4 9.162096369921324E-4 0.0 0.10583623668948403 1.1218893514189376E-4 64-65 2.7112325992624325E-4 0.0010564458059194996 0.0 0.11228710046014292 1.1218893514189376E-4 66-67 2.804723378547344E-4 0.0010657948838479908 0.0 0.11906518195829899 1.215380130703849E-4 68-69 2.804723378547344E-4 0.0011172148124546921 0.0 0.1255487675017076 1.2621255203463047E-4 70-71 2.804723378547344E-4 0.0011452620462401655 0.0 0.13212116928543688 1.3088709099887605E-4 72-73 2.8982141578322556E-4 0.0011546111241686565 0.0 0.1371089023602869 1.3088709099887605E-4 74-75 2.8982141578322556E-4 0.0011779838189898847 0.0 0.1415403652983917 1.3088709099887605E-4 76-77 2.8982141578322556E-4 0.001215380130703849 0.0 0.14549969980110772 1.3088709099887605E-4 78-79 2.8982141578322556E-4 0.0012387528255250768 0.0 0.1489869058684349 1.3088709099887605E-4 80-81 2.8982141578322556E-4 0.0012434273644893225 0.0 0.15035187124599464 1.3088709099887605E-4 82-83 2.8982141578322556E-4 0.0012434273644893225 0.0 0.1509268395385968 1.3088709099887605E-4 84-85 2.991704937117167E-4 0.0012434273644893225 0.0 0.15137092074020014 1.3088709099887605E-4 86-87 2.991704937117167E-4 0.001262125520346305 0.0 0.1515064823701633 1.3088709099887605E-4 88-89 2.991704937117167E-4 0.0012995218320602693 0.0 0.15155790229876998 1.3088709099887605E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12015 0.0 48.728203 1 GTATCAA 21905 0.0 36.344265 1 TCAACGC 26920 0.0 28.747868 4 ATCAACG 27250 0.0 28.477503 3 CAACGCA 27755 0.0 27.86791 5 TATCAAC 28435 0.0 27.526632 2 AACGCAG 28450 0.0 27.304886 6 ACGCAGA 33100 0.0 23.43105 7 CGCAGAG 33910 0.0 22.834307 8 GTACATG 29930 0.0 21.842041 1 TACATGG 29825 0.0 21.441523 2 ACATGGG 30525 0.0 20.359692 3 GCAGAGT 39750 0.0 19.395523 9 GAGTACT 23420 0.0 18.077187 12-13 AGAGTAC 35695 0.0 18.055138 10-11 CATGGGG 21130 0.0 17.79736 4 GTGGTAT 6295 0.0 17.363682 1 CAGAGTA 39250 0.0 17.150663 10-11 TGGTATC 6245 0.0 16.697979 2 GTACTTT 25850 0.0 16.394596 14-15 >>END_MODULE