##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139655_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9139362 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.568063284942646 34.0 31.0 34.0 31.0 34.0 2 32.699582531034444 34.0 31.0 34.0 31.0 34.0 3 32.77271925545787 34.0 31.0 34.0 31.0 34.0 4 36.26074489663502 37.0 37.0 37.0 35.0 37.0 5 36.19120065492537 37.0 35.0 37.0 35.0 37.0 6 36.218468750882174 37.0 37.0 37.0 35.0 37.0 7 36.16549721960898 37.0 37.0 37.0 35.0 37.0 8 36.144225165826676 37.0 36.0 37.0 35.0 37.0 9 37.86036596427628 39.0 38.0 39.0 35.0 39.0 10-11 37.79700229622155 39.0 38.0 39.0 35.0 39.0 12-13 37.764898906510105 39.0 38.0 39.0 35.0 39.0 14-15 39.136379268049566 40.0 38.5 41.0 36.0 41.0 16-17 39.10008844162208 40.0 38.0 41.0 36.0 41.0 18-19 38.9865660206916 40.0 38.5 41.0 35.0 41.0 20-21 39.04565498091402 40.0 39.0 41.0 36.0 41.0 22-23 38.95963177833585 40.0 38.0 41.0 35.0 41.0 24-25 38.851741604194046 40.0 38.0 41.0 35.0 41.0 26-27 38.8000325725474 40.0 38.0 41.0 35.0 41.0 28-29 38.683791111970166 40.0 38.0 41.0 35.0 41.0 30-31 38.62238631074244 40.0 38.0 41.0 35.0 41.0 32-33 38.49759530244003 40.0 38.0 41.0 34.0 41.0 34-35 38.26312566942217 40.0 38.0 41.0 34.0 41.0 36-37 38.542844322984024 40.0 38.0 41.0 34.0 41.0 38-39 38.644614509749815 40.0 38.0 41.0 35.0 41.0 40-41 38.642772956708704 40.0 38.0 41.0 35.0 41.0 42-43 38.57266322189734 40.0 38.0 41.0 34.0 41.0 44-45 38.497828949440716 40.0 38.0 41.0 34.0 41.0 46-47 38.42564060232982 40.0 38.0 41.0 34.0 41.0 48-49 38.35723798577679 40.0 38.0 41.0 34.0 41.0 50-51 38.28070515676917 40.0 38.0 41.0 33.5 41.0 52-53 38.18319123808326 40.0 37.5 41.0 33.0 41.0 54-55 38.0614405526152 40.0 37.0 41.0 33.0 41.0 56-57 37.91297253397187 40.0 37.0 41.0 33.0 41.0 58-59 37.73902307238977 39.5 36.0 41.0 33.0 41.0 60-61 37.56719555596873 39.0 36.0 41.0 33.0 41.0 62-63 37.347127533870236 39.0 35.5 41.0 32.5 41.0 64-65 37.057635353813055 38.5 35.0 40.0 32.0 41.0 66-67 36.73154239505958 38.0 35.0 40.0 31.5 41.0 68-69 36.41040697200876 37.0 35.0 40.0 31.0 41.0 70-71 36.06842229493277 37.0 35.0 39.5 31.0 41.0 72-73 35.74958776825045 36.0 34.5 39.0 31.0 41.0 74-75 35.42254225620641 36.0 34.0 39.0 31.0 40.0 76-77 34.50741082777651 35.0 33.5 37.0 29.5 39.0 78-79 34.75098902150891 35.0 34.0 37.0 30.0 39.0 80-81 34.5597735818298 35.0 34.0 37.0 30.0 39.0 82-83 34.31231662414402 35.0 34.0 36.0 30.0 38.5 84-85 34.058157603035546 35.0 34.0 36.0 30.0 37.0 86-87 33.85403036669955 35.0 34.0 35.5 30.0 37.0 88-89 33.65487621477534 35.0 33.5 35.0 30.0 36.5 90-91 33.47550897246391 35.0 33.0 35.0 29.0 36.0 92-93 33.343198537299784 35.0 33.0 35.0 29.0 36.0 94-95 33.28969081905289 35.0 33.0 35.0 29.0 36.0 96-97 33.28159868734753 35.0 33.0 35.0 29.0 35.0 98-99 33.361479211339855 35.0 33.0 35.0 30.0 35.0 100-101 31.79151613821812 33.5 30.0 34.5 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 0.0 13 0.0 14 1.0 15 0.0 16 0.0 17 0.0 18 2.0 19 10.0 20 43.0 21 259.0 22 1071.0 23 3753.0 24 9789.0 25 20453.0 26 35914.0 27 57215.0 28 83357.0 29 113008.0 30 146079.0 31 185712.0 32 235385.0 33 304632.0 34 421290.0 35 604619.0 36 1004804.0 37 1927595.0 38 2538611.0 39 1365837.0 40 79922.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.279216487806586 21.25654312774636 14.699803925001312 24.764436459445736 2 13.876592090017636 21.790524552497978 41.06000989822857 23.272873459255813 3 17.001405088365406 26.51820065966169 31.212482603264036 25.267911648708868 4 11.92680887939637 18.259429544300694 38.941413840794105 30.872347735508832 5 12.743430612209169 38.17827506521244 35.98943470877611 13.088859613802278 6 30.002582237705923 38.392305369303756 18.45962955830605 13.145482834684266 7 26.141141173999056 32.900607920029415 23.45888552371282 17.499365382258713 8 24.234208033339748 37.181917074736724 21.23574927877898 17.34812561314455 9 25.518409682174532 16.461011932898455 21.505281042868095 36.515297342058915 10-11 23.989750598666816 26.929560149007596 29.175145420603 19.905543831722582 12-13 24.596878271905442 24.611179052890023 29.325939745678063 21.466002929526475 14-15 21.800713293530848 25.970586352667247 26.88986404312368 25.338836310678232 16-17 21.38948185246959 29.092513242042806 27.661236324461136 21.856768581026465 18-19 21.50791234504176 28.279351146948787 29.31010194097342 20.90263456703603 20-21 22.183806027419266 27.491957483054513 29.22387037521424 21.100366114311985 22-23 21.92605690000656 27.373432084045234 29.0664374352763 21.634073580671902 24-25 21.71028400625066 27.483438888313046 29.167909418164633 21.63836768727166 26-27 21.656734206737127 27.666228827691207 29.088105835658553 21.588931129913117 28-29 21.63216223014117 27.70040217188649 29.08923304159089 21.578202556381456 30-31 21.820499708537298 27.62023868566009 28.987977645168517 21.571283960634094 32-33 21.631105865964166 27.808043006867837 28.90845648178186 21.652394645386135 34-35 21.83042331479394 27.780621261863597 28.871394053332278 21.51756137001018 36-37 21.768433971575853 27.696144863149524 28.889178192604486 21.646242972670134 38-39 21.63671004144137 27.859655860857334 28.916410714065766 21.587223383635532 40-41 21.855698872752928 27.72124339123984 28.790521113431517 21.632536622575714 42-43 21.78114005264375 27.809082698066124 28.567399829380495 21.842377419909635 44-45 21.86090887989097 27.916182891627273 28.40687510111721 21.816033127364545 46-47 21.94217858030806 27.875424114076054 28.18632265454809 21.996074651067797 48-49 21.876246822720006 28.003162399156533 28.133801426556726 21.98678935156673 50-51 21.898194950234544 28.10159064360085 28.00236227947582 21.99785212668879 52-53 22.077792980820654 28.01743534375317 27.89308617286892 22.011685502557253 54-55 22.05139240111171 27.93801854696586 27.922239736014053 22.088349315908378 56-57 22.017837385781654 28.05552336273738 27.900926220117356 22.02571303136361 58-59 21.967665475642974 28.116947478896414 27.869253031400447 22.04613401406016 60-61 22.069440198465827 28.0668368906686 27.85762100035089 22.006101910514683 62-63 22.061088713270767 28.14255957049256 27.844966365606115 21.951385350630556 64-65 22.026416690807864 28.050277299976546 27.85144102757252 22.07186498164307 66-67 22.064530096125168 28.102925132119864 27.695364649269422 22.137180122485546 68-69 22.031363339801622 28.077961980218475 27.792490653219033 22.098184026760865 70-71 22.03531086950606 27.8437990006895 27.877112899251973 22.24377723055247 72-73 22.085821839306927 27.95151880116572 27.756311484326663 22.206347875200688 74-75 21.956782713903657 28.030247096262535 27.762376032425408 22.250594157408404 76-77 22.087688090657643 27.93469054733786 27.75174069495266 22.22588066705184 78-79 22.031160557484252 27.940280772840676 27.702916550644158 22.325642119030913 80-81 22.053118996755543 27.942195025434014 27.70019723642155 22.304488741388894 82-83 22.0864075225403 27.925074753389822 27.759665291117564 22.228852432952316 84-85 22.10671005823425 27.895144396439125 27.72744194336357 22.270703601963053 86-87 22.055138863430756 27.866353186733917 27.82477102463887 22.253736925196456 88-89 22.078527306583233 27.84942967160736 27.80072548152337 22.271317540286038 90-91 22.132493539824885 27.831437244525624 27.826552712571395 22.209516503078095 92-93 22.152497618473184 27.74959084996257 27.863405135641322 22.234506395922928 94-95 21.974326340165298 27.74066342504135 27.960769319261853 22.3242409155315 96-97 21.986869140079314 27.798212712536518 27.962984913731948 22.251933233652217 98-99 22.106877081978134 28.352794522536406 28.00686650039104 21.533461895094415 100-101 20.500037648370945 31.925086371101724 25.935740117995238 21.639135862532093 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2481.0 1 2131.5 2 2611.5 3 3641.0 4 4744.0 5 6967.5 6 8901.5 7 11035.0 8 12986.5 9 13412.5 10 12479.5 11 11423.5 12 12525.5 13 16624.0 14 26171.0 15 39359.0 16 49818.0 17 54869.0 18 55353.0 19 53050.5 20 49694.5 21 46956.0 22 46621.0 23 51063.0 24 60969.0 25 75323.5 26 92496.5 27 110836.0 28 130009.5 29 149867.0 30 168626.0 31 187845.0 32 209678.5 33 232724.5 34 254705.0 35 275050.5 36 297354.5 37 315132.5 38 328051.0 39 341343.0 40 353711.5 41 364439.5 42 369781.5 43 374935.5 44 380751.5 45 383564.5 46 383651.5 47 381141.5 48 378585.0 49 374294.5 50 367489.5 51 356748.5 52 341647.0 53 323225.5 54 302844.5 55 281753.0 56 259111.5 57 234537.0 58 208141.0 59 180803.0 60 152974.0 61 126102.0 62 100821.5 63 78222.0 64 58778.5 65 43881.5 66 32778.5 67 24684.0 68 18806.0 69 13609.0 70 9779.0 71 7011.0 72 4863.5 73 3331.0 74 2267.5 75 1454.5 76 935.5 77 605.0 78 409.0 79 292.5 80 197.0 81 115.5 82 80.5 83 64.5 84 52.5 85 39.0 86 26.5 87 21.0 88 16.0 89 12.0 90 10.0 91 9.5 92 6.0 93 2.5 94 1.5 95 0.5 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 2.188336560035591E-5 2 0.0038624140284628183 3 0.004759632018077411 4 2.188336560035591E-5 5 2.188336560035591E-5 6 2.188336560035591E-5 7 2.188336560035591E-5 8 0.0 9 0.0028229541624459125 10-11 0.0010558723902171726 12-13 1.0941682800177956E-5 14-15 7.330927476119231E-4 16-17 6.0179255400978755E-5 18-19 4.92375726008008E-5 20-21 1.094201263988474E-5 22-23 5.744977494461022E-4 24-25 0.003912803903785301 26-27 0.02116926378369797 28-29 0.3354906511056094 30-31 0.32830175780987464 32-33 0.33855391205565555 34-35 0.17977298716999274 36-37 0.04031216209821416 38-39 0.03712220267580956 40-41 0.013127459846678494 42-43 0.010551554765615688 44-45 0.009144677429416787 46-47 0.00577258138014557 48-49 0.009086799084861511 50-51 0.009653301181865396 52-53 0.002934549503655228 54-55 0.003388867642672694 56-57 0.0035417666049466262 58-59 0.004592584961270235 60-61 0.00292399238657639 62-63 0.001680787608193567 64-65 4.6807416782664637E-4 66-67 0.00659939266120282 68-69 0.01642484800938398 70-71 0.013438192927612112 72-73 0.014560965016170282 74-75 0.007989407627007552 76-77 0.004817870683381135 78-79 0.0013006472748083083 80-81 0.0012547771030259197 82-83 5.965716536463106E-4 84-85 1.0929976305268699E-4 86-87 0.0 88-89 4.728539784882963E-4 90-91 0.004777454566101808 92-93 0.01914026707316874 94-95 0.0016479346150250437 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 176.0 20-21 533.0 22-23 1224.0 24-25 2955.0 26-27 5153.0 28-29 10146.0 30-31 24988.0 32-33 31517.0 34-35 45239.0 36-37 64614.0 38-39 74905.0 40-41 76630.0 42-43 88076.0 44-45 103289.0 46-47 101628.0 48-49 91160.0 50-51 82534.0 52-53 80498.0 54-55 86080.0 56-57 89584.0 58-59 88135.0 60-61 86239.0 62-63 84240.0 64-65 90625.0 66-67 95163.0 68-69 94744.0 70-71 93104.0 72-73 89259.0 74-75 90451.0 76-77 92143.0 78-79 96814.0 80-81 97409.0 82-83 94667.0 84-85 95752.0 86-87 101235.0 88-89 108349.0 90-91 116914.0 92-93 119540.0 94-95 135093.0 96-97 202572.0 98-99 779979.0 100-101 5226006.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.81091540599775 #Duplication Level Percentage of deduplicated Percentage of total 1 91.37254192082531 80.23506549040574 2 6.290287847625903 11.047118681345076 3 1.388143880140724 3.6568255449117175 4 0.45226889812048576 1.5885658381448717 5 0.2029973520595069 0.8912691654669451 6 0.0987497125543979 0.5202781593288497 7 0.05456605238570728 0.3354046507056409 8 0.0335889031755107 0.2359577868260015 9 0.026202469310858845 0.207077653447567 >10 0.07838163355522257 1.1048000667326654 >50 0.001921797393512537 0.11115123816656351 >100 3.30923360731164E-4 0.053167674722915795 >500 1.8609492131659495E-5 0.01331804979547212 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.0941682800177956E-5 2 0.0 2.188336560035591E-5 0.0 0.0 1.0941682800177956E-5 3 0.0 2.188336560035591E-5 0.0 0.0 1.0941682800177956E-5 4 0.0 7.659177960124569E-5 0.0 4.376673120071182E-5 1.0941682800177956E-5 5 0.0 7.659177960124569E-5 0.0 4.376673120071182E-5 1.0941682800177956E-5 6 0.0 7.659177960124569E-5 0.0 4.376673120071182E-5 1.0941682800177956E-5 7 0.0 7.659177960124569E-5 0.0 4.376673120071182E-5 2.188336560035591E-5 8 0.0 7.659177960124569E-5 0.0 4.376673120071182E-5 3.2825048400533864E-5 9 2.188336560035591E-5 9.84751452016016E-5 0.0 5.4708414000889775E-5 5.4708414000889775E-5 10-11 2.188336560035591E-5 9.84751452016016E-5 0.0 9.300430380151261E-5 5.4708414000889775E-5 12-13 2.188336560035591E-5 9.84751452016016E-5 0.0 1.0941682800177955E-4 6.017925540097875E-5 14-15 2.188336560035591E-5 1.6412524200266933E-4 0.0 1.3130019360213546E-4 7.659177960124569E-5 16-17 4.376673120071182E-5 1.8600860760302525E-4 0.0 1.5318355920249137E-4 8.753346240142365E-5 18-19 4.376673120071182E-5 2.0789197320338114E-4 0.0 1.750669248028473E-4 1.0394598660169057E-4 20-21 4.376673120071182E-5 2.51658704404093E-4 0.0 1.8600860760302525E-4 1.258293522020465E-4 22-23 4.376673120071182E-5 2.626003872042709E-4 0.0 2.0242113180329218E-4 1.477127178024024E-4 24-25 4.376673120071182E-5 2.626003872042709E-4 0.0 2.243044974036481E-4 1.750669248028473E-4 26-27 4.376673120071182E-5 2.680712286043599E-4 0.0 3.610755324058725E-4 1.750669248028473E-4 28-29 4.376673120071182E-5 2.735420700044489E-4 0.0 8.479804170137915E-4 1.8053776620293626E-4 30-31 4.92375726008008E-5 3.1730880120516073E-4 0.0 0.002188336560035591 1.9147944900311424E-4 32-33 5.4708414000889775E-5 3.1730880120516073E-4 0.0 0.004715865286876699 1.969502904032032E-4 34-35 5.4708414000889775E-5 3.610755324058725E-4 0.0 0.008211732941533555 1.969502904032032E-4 36-37 5.4708414000889775E-5 4.0484226360658435E-4 0.0 0.013359794699017283 1.969502904032032E-4 38-39 5.4708414000889775E-5 4.2672562920694027E-4 0.0 0.020143638035127615 2.0242113180329218E-4 40-41 5.4708414000889775E-5 4.2672562920694027E-4 0.0 0.027201023441242398 2.0789197320338114E-4 42-43 5.4708414000889775E-5 4.650215190075631E-4 0.0 0.034395179882359406 2.0789197320338114E-4 44-45 5.4708414000889775E-5 5.142590916083639E-4 0.0 0.04226772065708744 2.0789197320338114E-4 46-47 5.4708414000889775E-5 5.689675056092537E-4 0.0 0.05121801718763301 2.133628146034701E-4 48-49 5.4708414000889775E-5 5.853800298095207E-4 0.0 0.05945710433616701 2.188336560035591E-4 50-51 5.4708414000889775E-5 6.565009680106773E-4 0.0 0.06738982436629604 2.188336560035591E-4 52-53 5.4708414000889775E-5 6.893260164112112E-4 0.0 0.07551402384542816 2.243044974036481E-4 54-55 5.4708414000889775E-5 7.002676992113892E-4 0.0 0.08347409808255762 2.3524618020382603E-4 56-57 6.565009680106773E-5 7.112093820115671E-4 0.0 0.09100744669048014 2.4071702160391502E-4 58-59 7.659177960124569E-5 7.38563589012012E-4 0.0 0.0983711992149999 2.4071702160391502E-4 60-61 7.659177960124569E-5 7.604469546123679E-4 0.0 0.10555988481471683 2.5712954580418195E-4 62-63 7.659177960124569E-5 7.659177960124569E-4 0.0 0.1119279442044204 2.626003872042709E-4 64-65 7.659177960124569E-5 8.096845272131687E-4 0.0 0.11850389556732735 2.626003872042709E-4 66-67 7.659177960124569E-5 8.096845272131687E-4 0.0 0.12500325515063304 2.626003872042709E-4 68-69 7.659177960124569E-5 8.206262100133466E-4 0.0 0.13161750240334064 2.680712286043599E-4 70-71 7.659177960124569E-5 8.315678928135246E-4 0.0 0.1376354279434385 2.8448375280462683E-4 72-73 7.659177960124569E-5 8.425095756137026E-4 0.0 0.14276707717672196 3.0636711840498275E-4 74-75 7.659177960124569E-5 8.425095756137026E-4 0.0 0.1470179209445911 3.0636711840498275E-4 76-77 7.659177960124569E-5 9.191013552149482E-4 0.0 0.1509405142284549 3.0636711840498275E-4 78-79 8.206262100133467E-5 9.409847208153042E-4 0.0 0.1547153947945163 3.0636711840498275E-4 80-81 9.300430380151263E-5 9.409847208153042E-4 0.0 0.15637305973874327 3.2277964260524965E-4 82-83 9.84751452016016E-5 9.464555622153932E-4 0.0 0.1569365564029524 3.501338496056946E-4 84-85 9.84751452016016E-5 9.628680864156601E-4 0.0 0.15733592782515893 3.501338496056946E-4 86-87 9.84751452016016E-5 9.73809769215838E-4 0.0 0.15741799044616023 3.501338496056946E-4 88-89 9.84751452016016E-5 9.73809769215838E-4 0.0 0.1574398738117606 3.501338496056946E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11015 0.0 46.809467 1 GTATCAA 19760 0.0 34.889683 1 TCAACGC 24440 0.0 27.713335 4 ATCAACG 24655 0.0 27.45521 3 CAACGCA 25025 0.0 27.03218 5 TATCAAC 25685 0.0 26.54925 2 AACGCAG 25715 0.0 26.339254 6 ACGCAGA 29825 0.0 22.723577 7 CGCAGAG 30580 0.0 22.162546 8 GTACATG 26575 0.0 22.131062 1 TACATGG 27015 0.0 21.307732 2 ACATGGG 26425 0.0 21.26271 3 GCAGAGT 35375 0.0 19.09997 9 AGAGTAC 32130 0.0 18.16803 10-11 CATGGGG 17920 0.0 18.02604 4 GAGTACT 21075 0.0 17.759905 12-13 GTGGTAT 5930 0.0 17.6428 1 CAGAGTA 34680 0.0 16.8682 10-11 AGTACTT 22985 0.0 16.329433 12-13 TGGTATC 5880 0.0 16.304182 2 >>END_MODULE