##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139654_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 17762898 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.10281441688175 33.0 31.0 34.0 30.0 34.0 2 32.325043300929835 34.0 31.0 34.0 31.0 34.0 3 32.39090434455009 34.0 31.0 34.0 31.0 34.0 4 36.045073838739604 37.0 35.0 37.0 35.0 37.0 5 35.92630493064814 37.0 35.0 37.0 35.0 37.0 6 35.9494735600013 37.0 35.0 37.0 35.0 37.0 7 35.88227788055755 37.0 35.0 37.0 35.0 37.0 8 35.84517565771081 37.0 35.0 37.0 35.0 37.0 9 37.47678098472445 39.0 37.0 39.0 35.0 39.0 10-11 37.36069812482175 39.0 37.0 39.0 34.0 39.0 12-13 37.31731950495916 39.0 37.0 39.0 34.0 39.0 14-15 38.52050892821656 40.0 38.0 41.0 34.0 41.0 16-17 38.46687491534321 40.0 38.0 41.0 34.0 41.0 18-19 38.34749329754638 40.0 38.0 41.0 33.5 41.0 20-21 38.388040021252316 40.0 38.0 41.0 34.0 41.0 22-23 38.26608795192933 40.0 38.0 41.0 34.0 41.0 24-25 38.11362286678745 40.0 37.5 41.0 33.0 41.0 26-27 38.03959525886965 40.0 37.5 41.0 33.5 41.0 28-29 37.9518012086956 40.0 37.5 41.0 33.0 41.0 30-31 37.85346484326598 40.0 37.0 41.0 33.0 41.0 32-33 37.68136171330728 40.0 37.0 41.0 33.0 41.0 34-35 37.396546775163294 39.0 36.0 41.0 32.0 41.0 36-37 37.674528884420845 40.0 37.0 41.0 33.0 41.0 38-39 37.7668238063757 40.0 37.0 41.0 33.0 41.0 40-41 37.75285334834082 40.0 37.0 41.0 33.0 41.0 42-43 37.65964889476715 40.0 37.0 41.0 33.0 41.0 44-45 37.54799053296628 40.0 37.0 41.0 32.0 41.0 46-47 37.44789394227133 39.5 36.0 41.0 32.0 41.0 48-49 37.363208347304045 39.0 36.0 41.0 32.0 41.0 50-51 37.27364855036387 39.0 36.0 40.0 31.0 41.0 52-53 37.15132932800575 39.0 36.0 40.0 31.0 41.0 54-55 37.00449099849553 39.0 35.5 40.0 31.0 41.0 56-57 36.83533928958124 39.0 35.0 40.0 31.0 41.0 58-59 36.650355160409404 38.0 35.0 40.0 31.0 41.0 60-61 36.48422555655026 38.0 35.0 40.0 30.5 41.0 62-63 36.245649884646895 38.0 34.5 40.0 30.0 41.0 64-65 35.92810895713302 37.5 34.0 40.0 29.5 41.0 66-67 35.56092425623085 37.0 34.0 39.5 29.0 41.0 68-69 35.22106055758913 36.5 34.0 39.0 29.0 40.0 70-71 34.87117453153259 36.0 33.5 39.0 28.0 40.0 72-73 34.555785503234716 35.5 33.0 38.5 28.0 40.0 74-75 34.22297677005817 35.0 33.0 38.0 28.0 40.0 76-77 33.37618936004787 34.5 31.5 36.5 27.0 39.0 78-79 33.72294658734555 35.0 32.0 37.0 28.0 39.0 80-81 33.55105940801961 35.0 32.0 36.0 28.0 39.0 82-83 33.303976078625 35.0 32.0 36.0 28.0 37.5 84-85 33.0319878820782 34.0 32.0 35.5 27.0 37.0 86-87 32.80819088332012 34.0 32.0 35.0 27.0 37.0 88-89 32.584579622321655 34.0 31.5 35.0 27.0 36.0 90-91 32.37364964490099 34.0 31.0 35.0 26.0 36.0 92-93 32.23202943670559 34.0 31.0 35.0 26.0 35.5 94-95 32.184849421009616 34.0 31.0 35.0 26.0 35.0 96-97 32.20914631421593 34.0 31.0 35.0 26.5 35.0 98-99 32.40418101706912 34.0 31.0 35.0 27.5 35.0 100-101 30.892837973668474 32.5 28.0 34.5 24.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 3.0 19 24.0 20 124.0 21 892.0 22 3962.0 23 12697.0 24 32347.0 25 65058.0 26 114419.0 27 177772.0 28 251384.0 29 334910.0 30 427821.0 31 538003.0 32 679957.0 33 885628.0 34 1219878.0 35 1777713.0 36 2806044.0 37 4072070.0 38 3302194.0 39 1046883.0 40 13114.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.345617085503235 24.47616224720126 18.11424883162345 25.063971835672056 2 11.792961374473034 23.776458969575344 40.57468930897235 23.855890346979272 3 14.622287701770869 28.24506458598889 32.91818413719088 24.214463575049365 4 10.946047927435252 20.52718320971891 38.956127365499825 29.570641497346013 5 12.259904705848907 38.68176893462468 35.97574607067148 13.082580288854942 6 28.763875483134925 40.012762559256245 18.347352726005532 12.876009231603295 7 25.154491990185157 33.584660608532566 23.59528106201157 17.66556633927071 8 24.30153570661724 37.54498843600859 20.801442422289426 17.35203343508475 9 25.072820889184165 16.524693683297716 21.51666071120839 36.88582471630972 10-11 23.523505146478914 27.72212847723213 29.058488598062677 19.695877778226283 12-13 24.460352696952942 25.247304803529243 29.376692924769372 20.915649574748446 14-15 21.595375722543352 26.466605020893414 27.220271044361034 24.717748212202203 16-17 20.884402729613587 29.717775785295636 27.794889460636746 21.60293202445403 18-19 21.024372636628446 28.502349969316647 30.082134994744518 20.391142399310382 20-21 21.88986282184935 27.524352092932467 29.98798123951884 20.59780384569934 22-23 21.497823852611383 27.554806831376478 29.88348836274371 21.06388095326843 24-25 21.27793869635369 27.748111021042515 29.939044738661853 21.03490554394194 26-27 21.22734728931546 27.852854619005146 29.9014893560254 21.01830873565399 28-29 21.157428382013563 27.797824809986405 30.016784732232544 21.02796207576749 30-31 21.33576820570479 27.746119896200767 29.869975868251085 21.048136029843356 32-33 21.298718886524128 27.884225086456865 29.76503916713319 21.05201685988582 34-35 21.359516986808703 27.919252193439643 29.729478616092536 20.991752203659118 36-37 21.355605904740788 27.802061724013672 29.72578961350386 21.11654275774168 38-39 21.25188841028668 27.921537642812144 29.772578638365747 21.053995308535427 40-41 21.404631573861383 27.850509354633402 29.66395047291567 21.080908598589552 42-43 21.4139833677158 27.990181578475926 29.32416771246637 21.2716673413419 44-45 21.550786513111085 28.06952838433817 29.026002430559718 21.353682671991027 46-47 21.671977494521816 28.09568276728429 28.686755084869414 21.545584653324475 48-49 21.616980267810927 28.2355880313277 28.58071193522791 21.56671976563346 50-51 21.63896901170482 28.310663279214616 28.427664287951828 21.62270342112874 52-53 21.797280702872936 28.274765081493836 28.347660458802604 21.580293756830628 54-55 21.795214378109822 28.248959846754058 28.316167894460815 21.63965788067531 56-57 21.809699517506537 28.41110708673447 28.18101412999214 21.598179265766856 58-59 21.695565103963997 28.477158976532092 28.243670228142747 21.583605691361164 60-61 21.830483089586895 28.493950207571505 28.16185771682147 21.513708986020134 62-63 21.812845480041037 28.551046342008558 28.134101738072125 21.50200643987828 64-65 21.775845716868737 28.44201505514461 28.15867182574174 21.623467402244913 66-67 21.86282334873987 28.45136560303738 28.019238939753322 21.666572108469428 68-69 21.82644929780892 28.37592654772133 28.135057625877153 21.6625665285926 70-71 21.797802920831728 28.209311328477593 28.206234362117367 21.786651388573315 72-73 21.871888044446006 28.2840829223189 28.090399254437763 21.753629778797333 74-75 21.752659306255755 28.361201804597286 28.058671762646476 21.827467126500483 76-77 21.84135275218635 28.265110854890512 28.10700150696377 21.78653488595937 78-79 21.812777248532164 28.261370314449017 28.05713828074612 21.868714156272695 80-81 21.789666835875778 28.303028585042604 28.013709947553544 21.893594631528075 82-83 21.84664057770412 28.251010218104383 28.09890565754992 21.803443546641578 84-85 21.851227873305447 28.237115650537138 28.0917691445815 21.819887331575917 86-87 21.8079863947619 28.212887720576024 28.13239843930259 21.846727445359484 88-89 21.809220274170006 28.18694313358313 28.134692401078205 21.86914419116866 90-91 21.811033803568677 28.219255216379675 28.190567477456142 21.779143502595506 92-93 21.844771657275317 28.124462831643594 28.190092595879573 21.840672915201516 94-95 21.61359731868577 28.113800907725288 28.318789265671096 21.953812507917846 96-97 21.58496766913759 28.16115982427702 28.390494663940313 21.863377842645075 98-99 21.608174002986154 28.711850723429677 28.478566817970957 21.201408455613212 100-101 19.72929024501476 32.475784933490495 26.540049604499515 21.25487521699523 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 7141.0 1 5966.5 2 6556.0 3 8540.0 4 10126.0 5 13032.0 6 15899.5 7 21418.0 8 27051.5 9 28906.0 10 27401.5 11 25755.0 12 29520.5 13 41978.5 14 73391.0 15 116874.5 16 148546.0 17 159322.5 18 153764.5 19 139178.5 20 121147.5 21 104661.0 22 95278.0 23 98405.5 24 114358.5 25 142315.0 26 179073.5 27 218326.5 28 260215.5 29 303871.0 30 344240.0 31 385402.0 32 431064.0 33 479352.5 34 523029.0 35 560738.0 36 602647.0 37 636487.5 38 657209.5 39 675963.5 40 693165.5 41 706012.5 42 710258.5 43 716453.5 44 720475.0 45 718275.0 46 711291.0 47 699349.5 48 693606.5 49 682796.0 50 660977.5 51 634547.0 52 600528.5 53 558948.5 54 517004.0 55 474738.0 56 429747.0 57 383305.0 58 334957.0 59 286327.5 60 239292.5 61 192938.0 62 150046.0 63 114017.5 64 83663.5 65 60435.0 66 44256.0 67 33130.0 68 24903.5 69 17888.0 70 12442.5 71 8709.5 72 6082.5 73 4068.0 74 2745.0 75 1823.5 76 1181.5 77 770.5 78 517.5 79 358.5 80 253.0 81 174.0 82 133.0 83 97.5 84 71.5 85 56.5 86 42.5 87 30.5 88 24.0 89 19.0 90 14.5 91 11.5 92 9.0 93 6.0 94 2.0 95 0.5 96 1.0 97 1.5 98 2.0 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.6889135995714212E-5 2 0.002229365951434276 3 0.0034284946071299854 4 1.6889135995714212E-5 5 1.6889135995714212E-5 6 1.6889135995714212E-5 7 1.6889135995714212E-5 8 0.0 9 0.0027078914713128456 10-11 9.626807517557102E-4 12-13 0.0 14-15 6.924545758242827E-4 16-17 9.851995997499958E-5 18-19 3.659312799071413E-5 20-21 5.629923086242765E-6 22-23 6.41877435192901E-4 24-25 0.0031903296013141118 26-27 0.018425107136603704 28-29 0.3084995224854355 30-31 0.3033642513679155 32-33 0.311843221555309 34-35 0.16329841080567908 36-37 0.030503156435223007 38-39 0.02829062476254143 40-41 0.006901932454813193 42-43 0.005997289781020735 44-45 0.006696886023967021 46-47 0.004472811549998077 48-49 0.005602075874706458 50-51 0.005576892388404729 52-53 0.0015022879451660053 54-55 0.0014890823563544345 56-57 0.0014120840181992096 58-59 0.0018680240395455103 60-61 0.0010800708150777885 62-63 5.338894376261393E-4 64-65 1.3076381376171133E-4 66-67 0.005660277129231218 68-69 0.014461124193718197 70-71 0.01138743192493057 72-73 0.012410066145286279 74-75 0.006105701062048665 76-77 0.0034885354981630395 78-79 0.0010707984751416543 80-81 7.810126617145118E-4 82-83 3.0027286678560296E-4 84-85 5.3702064597354276E-5 86-87 0.0 88-89 2.620464990071021E-4 90-91 0.003540735485183375 92-93 0.014209255870134078 94-95 0.0010376860450211883 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 394.0 20-21 1492.0 22-23 2960.0 24-25 5832.0 26-27 9946.0 28-29 14393.0 30-31 30539.0 32-33 41040.0 34-35 60696.0 36-37 81255.0 38-39 100777.0 40-41 113895.0 42-43 144632.0 44-45 175028.0 46-47 171476.0 48-49 145427.0 50-51 125138.0 52-53 120309.0 54-55 130317.0 56-57 138779.0 58-59 141307.0 60-61 144344.0 62-63 146510.0 64-65 161573.0 66-67 168748.0 68-69 165821.0 70-71 164292.0 72-73 160528.0 74-75 163755.0 76-77 165830.0 78-79 178961.0 80-81 186602.0 82-83 186790.0 84-85 194418.0 86-87 214237.0 88-89 238421.0 90-91 266092.0 92-93 294848.0 94-95 372775.0 96-97 550928.0 98-99 1758580.0 100-101 1.0123213E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.8000518885177 #Duplication Level Percentage of deduplicated Percentage of total 1 88.70903929169779 74.3382209562483 2 7.869181926571252 13.188757075337133 3 1.9520416818987072 4.907435826949832 4 0.6858682013742259 2.299031634553778 5 0.31266696017001094 1.3100753743036007 6 0.1614626084364753 0.8118344979019229 7 0.08841852923880111 0.5186634136682567 8 0.06039073363107375 0.4048597289495705 9 0.03596662826128589 0.2712604783095706 >10 0.12075061804878247 1.5658208608995745 >50 0.0030651588411997983 0.18059831183405228 >100 0.001075689137526706 0.14296862761406612 >500 4.799441440975782E-5 0.03051334426356639 >1k 2.3978278458758828E-5 0.029959869166678244 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 5.629711998571404E-6 2 5.629711998571404E-6 1.6889135995714212E-5 0.0 1.1259423997142809E-5 5.629711998571404E-6 3 5.629711998571404E-6 1.6889135995714212E-5 0.0 1.1259423997142809E-5 5.629711998571404E-6 4 1.1259423997142809E-5 5.066740798714264E-5 0.0 2.2518847994285618E-5 5.629711998571404E-6 5 1.1259423997142809E-5 5.066740798714264E-5 0.0 2.2518847994285618E-5 5.629711998571404E-6 6 7.318625598142826E-5 5.066740798714264E-5 0.0 2.2518847994285618E-5 5.629711998571404E-6 7 7.318625598142826E-5 6.755654398285685E-5 0.0 2.2518847994285618E-5 1.1259423997142809E-5 8 7.318625598142826E-5 6.755654398285685E-5 0.0 2.2518847994285618E-5 1.6889135995714212E-5 9 7.881596797999966E-5 9.007539197714247E-5 0.0 2.8148559992857023E-5 2.8148559992857023E-5 10-11 8.163082397928536E-5 9.007539197714247E-5 0.0 7.037139998214255E-5 2.8148559992857023E-5 12-13 9.007539197714247E-5 1.0696452797285668E-4 0.0 8.726053597785677E-5 2.8148559992857023E-5 14-15 1.0133481597428528E-4 1.351130879657137E-4 0.0 1.0133481597428528E-4 4.222283998928553E-5 16-17 1.407427999642851E-4 1.407427999642851E-4 0.0 1.0977938397214239E-4 5.066740798714264E-5 18-19 1.4637251196285652E-4 1.548170799607136E-4 0.0 1.1259423997142809E-4 6.474168798357115E-5 20-21 1.5200222396142792E-4 1.8859535195214202E-4 0.0 1.1822395196999949E-4 8.444567997857106E-5 22-23 1.60446791959285E-4 2.3363304794071327E-4 0.0 1.2666851996785661E-4 9.007539197714247E-5 24-25 1.8015078395428494E-4 2.730410319307131E-4 0.0 1.5200222396142792E-4 9.570510397571387E-5 26-27 1.8578049595285634E-4 2.9555987992499873E-4 0.0 1.9703991994999914E-4 9.570510397571387E-5 28-29 1.8578049595285634E-4 3.068193039221415E-4 0.0 4.897849438757122E-4 9.851995997499957E-5 30-31 1.9703991994999914E-4 3.5185699991071277E-4 0.0 0.0012075732236935663 1.0133481597428528E-4 32-33 2.1674391194499904E-4 3.603015679085699E-4 0.0 0.0028317451352814164 1.0133481597428528E-4 34-35 2.3081819194142758E-4 4.081541198964268E-4 0.0 0.005303188702654263 1.0696452797285668E-4 36-37 2.3644790393999898E-4 4.6163638388285516E-4 0.0 0.008624718781811392 1.0696452797285668E-4 38-39 2.3644790393999898E-4 4.925997998749979E-4 0.0 0.014153095964408509 1.2103880796928519E-4 40-41 2.3644790393999898E-4 5.235632158671407E-4 0.0 0.019965773602933487 1.238536639685709E-4 42-43 2.3644790393999898E-4 5.545266318592833E-4 0.0 0.02515073835361775 1.238536639685709E-4 44-45 2.505221839364275E-4 6.446020238364258E-4 0.0 0.031357495832042726 1.2666851996785661E-4 46-47 2.730410319307131E-4 6.924545758242827E-4 0.0 0.03846500723023912 1.407427999642851E-4 48-49 2.758558879299988E-4 7.065288558207113E-4 0.0 0.045564074060437665 1.491873679621422E-4 50-51 2.9274502392571304E-4 7.909745357992823E-4 0.0 0.05270254887462621 1.6326164795857072E-4 52-53 3.0400444792285584E-4 8.022339597964251E-4 0.0 0.05909227199300475 1.6607650395785643E-4 54-55 3.068193039221415E-4 8.163082397928536E-4 0.0 0.06596615034326042 1.801507839542849E-4 56-57 3.096341599214272E-4 8.21937951791425E-4 0.0 0.07291321494949754 2.0829934394714196E-4 58-59 3.1526387191999864E-4 8.275676637899965E-4 0.0 0.08018117313965323 2.2237362394357047E-4 60-61 3.2089358391857006E-4 8.472716557849963E-4 0.0 0.08674823218598676 2.3363304794071327E-4 62-63 3.5467185590999845E-4 8.585310797821391E-4 0.0 0.09332936551231674 2.477073279371418E-4 64-65 3.5467185590999845E-4 9.289024797642817E-4 0.0 0.09987390571065599 2.477073279371418E-4 66-67 3.6311642390785557E-4 9.317173357635674E-4 0.0 0.10659296698095097 2.477073279371418E-4 68-69 3.6593127990714125E-4 9.514213277585673E-4 0.0 0.11349499389119952 2.505221839364275E-4 70-71 3.6874613590642694E-4 9.711253197535671E-4 0.0 0.11967641766563092 2.533370399357132E-4 72-73 4.3348782388999814E-4 9.851995997499957E-4 0.0 0.1241661129844916 2.64596463932856E-4 74-75 4.3348782388999814E-4 0.0010189778717414242 0.0 0.12774098010358445 2.64596463932856E-4 76-77 4.391175358885695E-4 0.0010668304237292812 0.0 0.13078102458281302 2.64596463932856E-4 78-79 4.391175358885695E-4 0.001086534415724281 0.0 0.13373943823806228 2.64596463932856E-4 80-81 4.475621038864267E-4 0.0010921641277228523 0.0 0.13534109130165584 2.7022617593142745E-4 82-83 4.5037695988571236E-4 0.0011034235517199953 0.0 0.13596598933349727 2.814855999285702E-4 84-85 4.5037695988571236E-4 0.0011118681197178522 0.0 0.1365514793813487 2.814855999285702E-4 86-87 4.6163638388285516E-4 0.0011372018237114237 0.0 0.13675696386929656 2.8430045592785593E-4 88-89 4.6163638388285516E-4 0.001154090959707138 0.0 0.1368639283972694 2.9555987992499873E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 25215 0.0 54.819702 1 GTATCAA 48730 0.0 39.262688 1 ATCAACG 66900 0.0 28.129803 3 TCAACGC 67065 0.0 28.060123 4 TATCAAC 67770 0.0 27.9811 2 CAACGCA 68830 0.0 27.328234 5 AACGCAG 70955 0.0 26.533741 6 GTGGTAT 11090 0.0 23.020832 1 ACGCAGA 82965 0.0 22.708082 7 CGCAGAG 84280 0.0 22.32353 8 TGGTATC 11055 0.0 22.056227 2 GCAGAGT 94270 0.0 19.82295 9 GTACATG 61555 0.0 19.688675 1 AGAGTAC 87615 0.0 19.620975 10-11 TACATGG 62280 0.0 19.17301 2 GAGTACT 55590 0.0 19.015245 12-13 AGTACTT 60275 0.0 18.509775 12-13 ACATGGG 63385 0.0 18.383509 3 GTACTTT 60250 0.0 17.537989 14-15 CAGAGTA 93535 0.0 17.512606 9 >>END_MODULE