##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139653_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8479972 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.57601322268517 34.0 31.0 34.0 31.0 34.0 2 32.71593149128323 34.0 31.0 34.0 31.0 34.0 3 32.78577724077391 34.0 31.0 34.0 31.0 34.0 4 36.271338395928666 37.0 37.0 37.0 35.0 37.0 5 36.20101222032337 37.0 37.0 37.0 35.0 37.0 6 36.22739756687876 37.0 37.0 37.0 35.0 37.0 7 36.175441145324534 37.0 37.0 37.0 35.0 37.0 8 36.15252656494621 37.0 37.0 37.0 35.0 37.0 9 37.87356656366318 39.0 38.0 39.0 35.0 39.0 10-11 37.80720508275263 39.0 38.0 39.0 35.0 39.0 12-13 37.77454890181241 39.0 38.0 39.0 35.0 39.0 14-15 39.14913693111251 40.0 39.0 41.0 36.0 41.0 16-17 39.108259378686625 40.0 38.0 41.0 36.0 41.0 18-19 38.991912591220824 40.0 38.5 41.0 35.5 41.0 20-21 39.05493171553748 40.0 39.0 41.0 36.0 41.0 22-23 38.96852398330447 40.0 38.0 41.0 35.0 41.0 24-25 38.85597017526797 40.0 38.0 41.0 35.0 41.0 26-27 38.80606721040051 40.0 38.0 41.0 35.0 41.0 28-29 38.700301230039194 40.0 38.0 41.0 35.0 41.0 30-31 38.63417430678915 40.0 38.0 41.0 35.0 41.0 32-33 38.500522672414014 40.0 38.0 41.0 34.0 41.0 34-35 38.265591253378275 40.0 38.0 41.0 34.0 41.0 36-37 38.535927528385216 40.0 38.0 41.0 34.0 41.0 38-39 38.62484567649719 40.0 38.0 41.0 35.0 41.0 40-41 38.62231987629961 40.0 38.0 41.0 34.5 41.0 42-43 38.55119008780672 40.0 38.0 41.0 34.0 41.0 44-45 38.47947330376238 40.0 38.0 41.0 34.0 41.0 46-47 38.40950866032111 40.0 38.0 41.0 34.0 41.0 48-49 38.340763704385466 40.0 38.0 41.0 34.0 41.0 50-51 38.25681903903654 40.0 38.0 41.0 33.0 41.0 52-53 38.16178118156655 40.0 37.5 41.0 33.0 41.0 54-55 38.03639236321685 40.0 37.0 41.0 33.0 41.0 56-57 37.88293535260836 40.0 37.0 41.0 33.0 41.0 58-59 37.71746769139304 39.5 36.0 41.0 33.0 41.0 60-61 37.54159684970742 39.0 36.0 41.0 33.0 41.0 62-63 37.325644807609095 39.0 35.5 41.0 32.0 41.0 64-65 37.04425873493562 38.5 35.0 40.0 32.0 41.0 66-67 36.723833461388764 38.0 35.0 40.0 31.0 41.0 68-69 36.409921329470464 37.5 35.0 40.0 31.0 41.0 70-71 36.07474509156437 37.0 35.0 39.5 31.0 41.0 72-73 35.75397267615138 36.5 34.5 39.0 31.0 41.0 74-75 35.41986439954664 36.0 34.0 39.0 30.5 40.0 76-77 34.50022533175686 35.0 33.5 37.0 29.5 39.0 78-79 34.74837172414493 35.0 34.0 37.0 30.0 39.0 80-81 34.550001240978716 35.0 34.0 37.0 30.0 39.0 82-83 34.29674670879998 35.0 34.0 36.0 30.0 38.5 84-85 34.03273171084332 35.0 34.0 36.0 30.0 37.0 86-87 33.823934269958016 35.0 34.0 35.5 30.0 37.0 88-89 33.61657149149205 35.0 33.0 35.0 29.5 36.5 90-91 33.43297647283535 35.0 33.0 35.0 29.0 36.0 92-93 33.29688591712883 35.0 33.0 35.0 29.0 36.0 94-95 33.24287474622599 35.0 33.0 35.0 29.0 36.0 96-97 33.235741215224365 35.0 33.0 35.0 29.0 35.0 98-99 33.32361875572033 35.0 33.0 35.0 29.5 35.0 100-101 31.736904079232453 33.0 30.0 34.5 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 8.0 20 45.0 21 221.0 22 1074.0 23 3713.0 24 9680.0 25 19868.0 26 35428.0 27 55975.0 28 80202.0 29 107933.0 30 138441.0 31 175785.0 32 221320.0 33 286211.0 34 395374.0 35 568623.0 36 949798.0 37 1833412.0 38 2397720.0 39 1138694.0 40 60447.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.129795711589615 21.69271313631696 15.654355934194122 24.523135217899306 2 13.436265825180731 21.758388924575833 41.725998257229726 23.079346993013704 3 16.622291198750876 26.76354304805629 31.573299715137683 25.040866038055153 4 11.742338300173632 19.17621897808153 39.11209848334405 29.969344238400787 5 12.750796818668741 38.086729531654115 36.017465623707245 13.145008025969899 6 29.13575658032833 38.84225089422465 18.82032157653351 13.20167094891351 7 25.76522658329532 33.12112351314367 23.27103202699254 17.842617876568458 8 23.99129383917777 37.27644383731455 21.241956930989865 17.490305392517804 9 25.025366379676328 17.085229620572736 21.52462909187653 36.364774907874406 10-11 23.67863153925595 27.2289654615315 29.173577377307552 19.918825621904997 12-13 24.526755512871976 24.70137873096751 29.24769680843286 21.524168947727656 14-15 21.706346085063764 26.191104846377694 26.82268502265528 25.279864045903256 16-17 21.266140316441035 29.427473698752536 27.50967765976961 21.79670832503682 18-19 21.36763243872899 28.405099617999763 29.29413004305382 20.933137900217435 20-21 22.055801801984536 27.483406963544493 29.23215297787839 21.228638256592582 22-23 21.74028699148149 27.59439216602487 29.09432134455359 21.570999497940043 24-25 21.601297000980136 27.730196382075974 29.175373637421743 21.493132979522148 26-27 21.53832128255988 27.84067664893791 29.146762754214674 21.474239314287537 28-29 21.412434859165984 27.750898442186944 29.282078925515144 21.554587773131935 30-31 21.674590342651612 27.615983871814887 29.042512312928903 21.6669134726046 32-33 21.62534694635233 27.782991646556525 29.127514386485988 21.46414702060516 34-35 21.721511082430922 27.977316218398308 28.997937702865656 21.30323499630511 36-37 21.585428320807836 27.80041968325185 28.959181957555817 21.654970038384498 38-39 21.509265269350713 27.81443056423094 29.09901816312481 21.577286003293533 40-41 21.712475010162418 27.752278152100473 28.994955374934577 21.540291462802532 42-43 21.722613800198467 27.800668523406213 28.815769816119623 21.66094786027569 44-45 21.680035560559578 28.006433286408388 28.595793952083643 21.717737200948395 46-47 21.90336875671679 27.82799055403926 28.251965424508562 22.01667526473538 48-49 21.828059967376763 27.940044609271837 28.219406600172064 22.01248882317934 50-51 21.73884960606341 28.100904627312524 28.19938956212039 21.960856204503678 52-53 21.914232675889313 28.071286243455447 28.176561099186966 21.837919981468275 54-55 21.8730023003272 28.04286417841293 28.081322294353917 22.00281122690595 56-57 22.003948730976905 28.19891700056355 27.861630637613015 21.935503630846526 58-59 21.793925407698488 28.335646876222548 28.09422153945304 21.77620617662592 60-61 22.007811599992174 28.46503794079982 27.796464918667695 21.73068554054031 62-63 21.88659494146933 28.591047027690212 27.782248888874744 21.74010914196571 64-65 21.861188295988935 28.43590009911764 27.81148107841544 21.89143052647799 66-67 21.951781386053227 28.3801060398338 27.69253594578098 21.975576628331993 68-69 21.907937564946348 28.249755280590815 27.832434556476116 22.00987259798672 70-71 21.926709310424663 28.06663408945945 27.888227518993798 22.11842908112209 72-73 21.96405337990186 28.11975375381169 27.80480249125966 22.111390375026787 74-75 21.80868334700806 28.22605873713301 27.80512330687043 22.160134608988503 76-77 21.9283973202724 28.184465440663907 27.759468834818207 22.127668404245487 78-79 21.879277673745392 28.166364057938008 27.752010495400338 22.202347772916262 80-81 21.887471806516086 28.20773870640946 27.72654465019237 22.17824483688208 82-83 21.929933131237732 28.15598686287676 27.830846527377815 22.08323347850769 84-85 21.974632188959415 28.12347660338682 27.806431158839462 22.095460048814306 86-87 21.855268650310496 28.16632703987954 27.85495363926435 22.123450670545612 88-89 21.920124570872048 28.156138082768585 27.80356141125782 22.12017593510155 90-91 21.946968834993857 28.194450552310045 27.798443692575887 22.06013692012021 92-93 21.96100479729712 28.143497140347073 27.835423017588674 22.06007504476713 94-95 21.762166463202824 28.210184623903068 27.91906372711833 22.108585185775777 96-97 21.740251598181217 28.246163063044328 27.968699510485607 22.04488582828885 98-99 21.90316116534628 28.764875358746888 27.99975117356149 21.332212302345344 100-101 20.241512285658395 32.455385222500475 25.94466678176571 21.35843571007542 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2892.0 1 2357.0 2 2511.0 3 3354.0 4 4261.5 5 5993.5 6 7388.5 7 8860.5 8 10182.5 9 10462.0 10 9867.5 11 9463.5 12 11024.5 13 15169.5 14 24653.5 15 37696.0 16 47916.5 17 53025.0 18 53604.5 19 50845.5 20 46239.5 21 41765.0 22 39926.0 23 42744.0 24 50123.0 25 61858.5 26 77560.0 27 95061.5 28 114093.5 29 134033.0 30 152984.0 31 172594.5 32 193856.5 33 215505.5 34 237170.5 35 256327.5 36 276558.0 37 294019.0 38 304810.0 39 316100.0 40 327568.0 41 336866.0 42 341328.0 43 344826.5 44 348911.5 45 350832.5 46 351719.0 47 351370.0 48 355910.0 49 353095.0 50 339019.5 51 324920.5 52 306643.0 53 284778.0 54 262541.5 55 240196.0 56 218182.0 57 196140.5 58 172870.0 59 147976.0 60 122524.5 61 98827.5 62 77666.5 63 59426.5 64 43675.0 65 31732.5 66 23484.5 67 17648.0 68 13308.5 69 9783.5 70 7097.5 71 5123.5 72 3585.0 73 2402.0 74 1588.5 75 1017.5 76 651.0 77 420.0 78 276.0 79 193.5 80 133.5 81 84.5 82 59.5 83 38.5 84 24.0 85 17.0 86 13.0 87 11.5 88 10.0 89 9.0 90 7.5 91 5.5 92 4.0 93 2.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.004351429462267092 3 0.005153318902468075 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0028773679913094053 10-11 9.37503095529089E-4 12-13 0.0 14-15 6.014170801507363E-4 16-17 4.127372118681524E-5 18-19 4.127372118681524E-5 20-21 0.0 22-23 6.191680633820529E-4 24-25 0.00392793547711323 26-27 0.020636507042871725 28-29 0.3309936426200105 30-31 0.32427242854753147 32-33 0.3347184568837965 34-35 0.17951186451303883 36-37 0.04027050621742998 38-39 0.03696754419833111 40-41 0.014541046340161574 42-43 0.011610359258034891 44-45 0.010153179512867838 46-47 0.006517698705711185 48-49 0.010149642306255906 50-51 0.01036112290148706 52-53 0.0034251054393338344 54-55 0.004084729433978595 56-57 0.004294157251006903 58-59 0.005277098077568136 60-61 0.003802670683267678 62-63 0.0022609210276197693 64-65 7.768094520566936E-4 66-67 0.006608600362091714 68-69 0.015399166034848949 70-71 0.012508968335290166 72-73 0.014159233651396593 74-75 0.006966283681046407 76-77 0.0040927832537569825 78-79 0.0013259599391470863 80-81 0.001297198626689337 82-83 5.454973944759248E-4 84-85 8.947442276694582E-5 86-87 0.0 88-89 4.5109792647868367E-4 90-91 0.0044750231661944495 92-93 0.01691061162539569 94-95 0.0016105903446631286 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 120.0 20-21 511.0 22-23 1127.0 24-25 2218.0 26-27 3887.0 28-29 6706.0 30-31 15390.0 32-33 20865.0 34-35 30940.0 36-37 42963.0 38-39 51780.0 40-41 54132.0 42-43 65472.0 44-45 78233.0 46-47 77826.0 48-49 68974.0 50-51 61218.0 52-53 59890.0 54-55 65158.0 56-57 70576.0 58-59 70786.0 60-61 72233.0 62-63 73276.0 64-65 78483.0 66-67 85451.0 68-69 76508.0 70-71 73239.0 72-73 70468.0 74-75 71243.0 76-77 72921.0 78-79 76620.0 80-81 78732.0 82-83 76676.0 84-85 79306.0 86-87 84159.0 88-89 90991.0 90-91 97502.0 92-93 104792.0 94-95 123187.0 96-97 195113.0 98-99 768551.0 100-101 5181749.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.02164499970911 #Duplication Level Percentage of deduplicated Percentage of total 1 89.99173163975411 77.41236792024019 2 7.176077421785025 12.345959689344385 3 1.6529633226463984 4.265718724146845 4 0.5680933536706833 1.9547329918461487 5 0.2487160148482936 1.0697480367511145 6 0.12895302177986587 0.6655650636712428 7 0.06901033097899828 0.4155467534951473 8 0.04354269906803753 0.29964916812479114 9 0.028565145349127928 0.2211498713328997 >10 0.0904582955303669 1.1840177316629994 >50 0.0014662616449933718 0.08136201006536088 >100 4.014412695705001E-4 0.06960429697102903 >500 2.1051674500640388E-5 0.014577742347875304 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 4.716996707064599E-5 0.0 0.0 0.0 5 0.0 5.8962458838307487E-5 0.0 0.0 0.0 6 0.0 5.8962458838307487E-5 0.0 1.1792491767661498E-5 0.0 7 0.0 5.8962458838307487E-5 0.0 1.1792491767661498E-5 1.1792491767661498E-5 8 0.0 7.075495060596898E-5 0.0 1.1792491767661498E-5 1.1792491767661498E-5 9 0.0 1.8867986828258396E-4 0.0 1.1792491767661498E-5 1.1792491767661498E-5 10-11 1.1792491767661498E-5 1.8867986828258396E-4 0.0 5.3066212954476735E-5 1.1792491767661498E-5 12-13 1.1792491767661498E-5 1.8867986828258396E-4 0.0 5.8962458838307487E-5 1.1792491767661498E-5 14-15 1.7688737651492247E-5 2.2405734358556844E-4 0.0 5.8962458838307487E-5 2.3584983535322992E-5 16-17 2.9481229419153743E-5 2.5943481888855295E-4 0.0 5.8962458838307487E-5 3.537747530298449E-5 18-19 3.537747530298449E-5 2.7712355654004516E-4 0.0 8.844368825746123E-5 3.537747530298449E-5 20-21 3.537747530298449E-5 2.9481229419153743E-4 0.0 1.0023618002512273E-4 3.537747530298449E-5 22-23 3.537747530298449E-5 3.3608601537835265E-4 0.0 1.1792491767661497E-4 3.537747530298449E-5 24-25 5.3066212954476735E-5 3.8325598244899866E-4 0.0 1.4150990121193795E-4 3.537747530298449E-5 26-27 7.075495060596898E-5 4.127372118681524E-4 0.0 1.7099113063109172E-4 4.716996707064599E-5 28-29 7.075495060596898E-5 4.1863345775198314E-4 0.0 3.183972777268604E-4 4.716996707064599E-5 30-31 1.0023618002512273E-4 4.716996707064599E-4 0.0 9.021256202261046E-4 4.716996707064599E-5 32-33 1.1792491767661497E-4 4.8349216247412137E-4 0.0 0.002423357058254438 4.716996707064599E-5 34-35 1.238211635604457E-4 5.719358507315826E-4 0.0 0.004227608298706647 4.716996707064599E-5 36-37 1.2971740944427648E-4 6.485870472213824E-4 0.0 0.007116768781783713 4.716996707064599E-5 38-39 1.2971740944427648E-4 6.603795389890438E-4 0.0 0.011320792096955037 4.716996707064599E-5 40-41 1.4150990121193795E-4 7.075495060596898E-4 0.0 0.01623236491818605 5.8962458838307487E-5 42-43 1.4150990121193795E-4 7.429269813626744E-4 0.0 0.020754785511084235 5.8962458838307487E-5 44-45 1.5330239297959945E-4 8.372669155039663E-4 0.0 0.026055510560648077 5.8962458838307487E-5 46-47 1.591986388634302E-4 9.080218661099352E-4 0.0 0.03201661514920096 5.8962458838307487E-5 48-49 1.6509488474726096E-4 9.139181119937659E-4 0.0 0.03780672860712276 5.8962458838307487E-5 50-51 1.6509488474726096E-4 0.0010436355214380425 0.0 0.043885758113352255 5.8962458838307487E-5 52-53 1.7688737651492246E-4 0.0010495317673218732 0.0 0.04950488044064297 8.844368825746123E-5 54-55 1.7688737651492246E-4 0.001055428013205704 0.0 0.055660561143362264 1.238211635604457E-4 56-57 1.7688737651492246E-4 0.0010731167508571961 0.0 0.06209926164850544 1.2971740944427648E-4 58-59 1.7688737651492246E-4 0.0010731167508571961 0.0 0.06850258467834563 1.2971740944427648E-4 60-61 1.7688737651492246E-4 0.0010849092426248577 0.0 0.07437524557864106 1.2971740944427648E-4 62-63 1.7688737651492246E-4 0.0011202867179278422 0.0 0.08014177405302753 1.2971740944427648E-4 64-65 1.7688737651492246E-4 0.0012500041273721186 0.0 0.08605570867450978 1.2971740944427648E-4 66-67 1.8867986828258396E-4 0.0012500041273721186 0.0 0.09175148219829027 1.2971740944427648E-4 68-69 1.8867986828258396E-4 0.0012853816026751031 0.0 0.09779513422921679 1.2971740944427648E-4 70-71 1.8867986828258396E-4 0.0013207590779780877 0.0 0.10349680399888113 1.2971740944427648E-4 72-73 1.8867986828258396E-4 0.0013325515697457492 0.0 0.10782464847761289 1.4150990121193795E-4 74-75 1.8867986828258396E-4 0.0013502403073972413 0.0 0.1112562635820024 1.4150990121193795E-4 76-77 1.8867986828258396E-4 0.0014209952580032104 0.0 0.11491783227586129 1.4150990121193795E-4 78-79 1.8867986828258396E-4 0.0014740614709576872 0.0 0.11810770129901371 1.4150990121193795E-4 80-81 1.8867986828258396E-4 0.0014740614709576872 0.0 0.11945204536052713 1.4150990121193795E-4 82-83 1.8867986828258396E-4 0.0014740614709576872 0.0 0.12002987745714255 1.4150990121193795E-4 84-85 1.8867986828258396E-4 0.0014799577168415178 0.0 0.12048388839019752 1.4150990121193795E-4 86-87 1.8867986828258396E-4 0.0015094389462606717 0.0 0.1205959170619903 1.4150990121193795E-4 88-89 1.8867986828258396E-4 0.0015684014050989792 0.0 0.12066077576671244 1.4150990121193795E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10590 0.0 50.93377 1 GTATCAA 19010 0.0 36.314156 1 CTTATAC 7100 0.0 30.568256 1 TCAACGC 23790 0.0 28.390263 4 ATCAACG 24025 0.0 28.13081 3 CAACGCA 24530 0.0 27.53381 5 TATCAAC 25250 0.0 26.985262 2 AACGCAG 25365 0.0 26.711466 6 ACGCAGA 28975 0.0 23.324617 7 TATACAC 11080 0.0 23.01324 3 CGCAGAG 29655 0.0 22.804153 8 GTGGTAT 5500 0.0 21.31971 1 TGGTATC 5365 0.0 20.98193 2 TTATACA 11325 0.0 20.670233 2 GTACATG 24360 0.0 19.936903 1 GCAGAGT 34255 0.0 19.692295 9 ACATCTC 11305 0.0 19.499731 8 TACATGG 24075 0.0 19.482183 2 ACACATC 11935 0.0 18.93486 6 AGAGTAC 31300 0.0 18.859621 10-11 >>END_MODULE