##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139651_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8553708 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.58141884198058 34.0 31.0 34.0 31.0 34.0 2 32.72393200703134 34.0 31.0 34.0 31.0 34.0 3 32.79405118809293 34.0 31.0 34.0 31.0 34.0 4 36.27644981568228 37.0 37.0 37.0 35.0 37.0 5 36.206948495319224 37.0 37.0 37.0 35.0 37.0 6 36.23242165853686 37.0 37.0 37.0 35.0 37.0 7 36.17811807464084 37.0 37.0 37.0 35.0 37.0 8 36.15407493451963 37.0 37.0 37.0 35.0 37.0 9 37.872814222790865 39.0 38.0 39.0 35.0 39.0 10-11 37.8086912132142 39.0 38.0 39.0 35.0 39.0 12-13 37.778609288509735 39.0 38.0 39.0 35.0 39.0 14-15 39.15599369302763 40.0 39.0 41.0 36.0 41.0 16-17 39.117710295932476 40.0 38.0 41.0 36.0 41.0 18-19 39.00260512750728 40.0 38.5 41.0 35.5 41.0 20-21 39.06429797662557 40.0 39.0 41.0 36.0 41.0 22-23 38.98068216120518 40.0 38.0 41.0 35.0 41.0 24-25 38.87216721813762 40.0 38.0 41.0 35.0 41.0 26-27 38.82093064740995 40.0 38.0 41.0 35.0 41.0 28-29 38.70075233544334 40.0 38.0 41.0 35.0 41.0 30-31 38.63451609705993 40.0 38.0 41.0 35.0 41.0 32-33 38.505962906079105 40.0 38.0 41.0 34.0 41.0 34-35 38.27332205584591 40.0 38.0 41.0 34.0 41.0 36-37 38.54253156389811 40.0 38.0 41.0 34.0 41.0 38-39 38.63518958511444 40.0 38.0 41.0 35.0 41.0 40-41 38.62992932578874 40.0 38.0 41.0 34.5 41.0 42-43 38.56214196852706 40.0 38.0 41.0 34.0 41.0 44-45 38.48755980127098 40.0 38.0 41.0 34.0 41.0 46-47 38.41169200662682 40.0 38.0 41.0 34.0 41.0 48-49 38.34237701370226 40.0 38.0 41.0 34.0 41.0 50-51 38.26150385569153 40.0 38.0 41.0 33.0 41.0 52-53 38.16173977219873 40.0 37.0 41.0 33.0 41.0 54-55 38.03885424304589 40.0 37.0 41.0 33.0 41.0 56-57 37.88577482974553 40.0 37.0 41.0 33.0 41.0 58-59 37.7116436669868 39.5 36.0 41.0 33.0 41.0 60-61 37.5404885855947 39.0 36.0 41.0 33.0 41.0 62-63 37.320146325531496 39.0 35.5 41.0 32.0 41.0 64-65 37.031146184264436 38.5 35.0 40.0 32.0 41.0 66-67 36.70557581059086 38.0 35.0 40.0 31.0 41.0 68-69 36.38597114928815 37.0 35.0 40.0 31.0 41.0 70-71 36.04523409058221 37.0 35.0 39.5 31.0 41.0 72-73 35.7228654788956 36.0 34.5 39.0 31.0 41.0 74-75 35.39060236384891 36.0 34.0 39.0 31.0 40.0 76-77 34.48235571751035 35.0 33.5 37.0 29.5 39.0 78-79 34.71897741652646 35.0 34.0 37.0 30.0 39.0 80-81 34.52685633928621 35.0 34.0 37.0 30.0 39.0 82-83 34.27735269939118 35.0 34.0 36.0 30.0 38.5 84-85 34.024098516230914 35.0 34.0 36.0 30.0 37.0 86-87 33.820285223762006 35.0 34.0 35.5 30.0 37.0 88-89 33.618117126295374 35.0 33.5 35.0 29.5 36.5 90-91 33.44344058007667 35.0 33.0 35.0 29.0 36.0 92-93 33.31222689067259 35.0 33.0 35.0 29.0 36.0 94-95 33.25864034351583 35.0 33.0 35.0 29.0 36.0 96-97 33.255912742155694 35.0 33.0 35.0 29.0 35.0 98-99 33.3403504842314 35.0 33.0 35.0 30.0 35.0 100-101 31.766594757393506 33.5 30.0 34.5 25.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 1.0 19 9.0 20 51.0 21 239.0 22 1069.0 23 3644.0 24 9379.0 25 19731.0 26 34990.0 27 55694.0 28 80349.0 29 108506.0 30 139731.0 31 176834.0 32 223018.0 33 289675.0 34 398896.0 35 575700.0 36 952559.0 37 1830753.0 38 2383543.0 39 1200138.0 40 69198.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.75176897028831 21.46225524494941 15.5264180843272 24.259557700435074 2 13.678810608152645 21.622169850255094 41.60216364449656 23.096855897095708 3 16.863966411147775 26.59078107035472 31.386594716387123 25.158657802110383 4 11.935950561774108 18.73092420185171 38.910401983701796 30.42272325267238 5 12.876186401097536 38.101430900410996 35.818011025631584 13.204371672859889 6 29.689508815185935 38.45236654759546 18.627027703199957 13.231096934018648 7 26.22461260938973 33.017213008865745 23.20302138079347 17.555153000951048 8 24.301718038539544 37.24091353130128 20.958781852268046 17.498586577891132 9 25.323208914863088 17.035660247343586 21.430707576805887 36.21042326098745 10-11 23.959474723259127 27.084126734812823 28.985507839396035 19.97089070253201 12-13 24.797315971038525 24.600074026375463 29.149592200248126 21.453017802337886 14-15 21.938390008002436 26.008806771849898 26.793489792947916 25.259313427199746 16-17 21.440642640933252 29.20990305544259 27.461712929376148 21.88774137424801 18-19 21.552923557686405 28.2737012791533 29.224020468323374 20.949354694836916 20-21 22.343250631279954 27.353518119080643 29.19006242564774 21.11316882399166 22-23 22.051502702930225 27.34496662186629 28.99939259338073 21.604138081822757 24-25 21.832034394295 27.508898715733793 29.086874878156856 21.572192011814355 26-27 21.77133488838801 27.63842919509072 29.025219170978634 21.565016745542636 28-29 21.715485707084817 27.631475876217127 29.06046204420461 21.59257637249344 30-31 22.01459446231966 27.494621612456427 28.95231614684845 21.53846777837546 32-33 21.687252699269468 27.759279090424627 28.929120604699516 21.62434760560639 34-35 21.916129524701176 27.713328344638512 28.87381335147919 21.496728779181122 36-37 21.806392904522856 27.645093407803728 28.885946583754237 21.662567103919184 38-39 21.710795639887017 27.669686917691827 28.97186192321131 21.647655519209845 40-41 21.92582017734428 27.613940986663405 28.796044614538935 21.664194221453375 42-43 21.86991892471798 27.700238916448956 28.60868587751591 21.82115628131715 44-45 21.942750561580652 27.80169624946318 28.412802098084654 21.842751090871516 46-47 22.08057415223403 27.72348875217817 28.119677492949215 22.076259602638586 48-49 21.99878490752858 27.86418200863674 28.07493624737038 22.062096836464296 50-51 21.92820019332446 27.985779374545206 28.018572022630124 22.067448409500212 52-53 22.132675307100648 27.90097921271651 27.930638362870457 22.035707117312384 54-55 22.11324659390618 27.845118862882188 27.91550780938029 22.126126733831335 56-57 22.147131610917913 27.996479343721724 27.795854843300553 22.060534202059806 58-59 22.022294031788586 28.04397809559077 27.892497095652857 22.041230776967787 60-61 22.164809449010527 28.09879486386037 27.773366890387628 21.96302879674147 62-63 22.127714233730778 28.175521796255687 27.744255857732362 21.95250811228117 64-65 22.085794168467558 28.083888093727875 27.760580902016663 22.0697368357879 66-67 22.166896845161506 28.078545243151538 27.612892170767456 22.1416657409195 68-69 22.098666976238352 28.00949792467224 27.738947633054757 22.152887466034656 70-71 22.09559665303781 27.813672942393087 27.81422432741022 22.27650607715889 72-73 22.19206103147371 27.864825039625174 27.676881542507793 22.266232386393327 74-75 22.0229884927975 28.00126547330159 27.67289866968281 22.3028473642181 76-77 22.173994322282443 27.9061070844469 27.656135453101875 22.263763140168777 78-79 22.136324685488457 27.89925607657709 27.589408590347308 22.37501064758715 80-81 22.148089858386495 27.876736202475694 27.65227391702323 22.322900022114585 82-83 22.179952437267193 27.84517205052941 27.72122113349852 22.253654378704883 84-85 22.222539345208112 27.80165331985677 27.712257014266502 22.26355032066862 86-87 22.119404417461194 27.804478131123943 27.78595018829173 22.290167263123127 88-89 22.186915364214062 27.782763685010565 27.724140365931394 22.306180584843975 90-91 22.149988456142776 27.815504686369536 27.76981252495258 22.26469433253511 92-93 22.228578056609948 27.70271154165877 27.789240743123628 22.279469658607653 94-95 22.050739705073973 27.702024459391634 27.86030545494946 22.38693038058493 96-97 22.0346838354085 27.726797501973827 27.946680216880488 22.291838445737188 98-99 22.177067187699574 28.310141155270795 27.977456236342736 21.535335420686895 100-101 20.53424359670187 31.89069427053156 25.901928474980867 21.673133657785705 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2325.0 1 1887.5 2 2064.5 3 2836.0 4 3733.5 5 5516.5 6 7126.0 7 8904.0 8 10624.0 9 11331.0 10 10844.0 11 10089.5 12 11146.0 13 15115.5 14 24853.5 15 38024.0 16 48224.0 17 53290.5 18 53801.0 19 51215.0 20 46755.0 21 42087.5 22 39811.5 23 42166.5 24 49232.0 25 60844.0 26 76150.5 27 93076.0 28 110843.5 29 130023.5 30 148603.5 31 167659.0 32 189271.0 33 211378.5 34 232944.5 35 253155.0 36 275368.5 37 292687.0 38 304164.5 39 315578.5 40 326370.5 41 336038.0 42 340202.0 43 344890.0 44 350757.5 45 354752.0 46 357097.0 47 355428.0 48 351884.0 49 347754.0 50 341248.5 51 329685.5 52 313996.5 53 295653.5 54 276468.0 55 256521.0 56 234255.0 57 210833.5 58 187127.0 59 162075.0 60 135732.5 61 110349.0 62 87103.5 63 66879.0 64 49869.0 65 37166.0 66 27964.0 67 21074.0 68 15989.5 69 11691.5 70 8375.0 71 5951.5 72 4022.0 73 2654.0 74 1748.5 75 1137.0 76 769.0 77 482.5 78 306.0 79 219.5 80 151.0 81 102.0 82 75.0 83 59.0 84 43.5 85 27.5 86 18.5 87 13.5 88 8.0 89 4.5 90 3.5 91 2.5 92 1.0 93 1.5 94 1.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 3.507250890491001E-5 2 0.0042320827411924744 3 0.004606189502844848 4 3.507250890491001E-5 5 3.507250890491001E-5 6 3.507250890491001E-5 7 3.507250890491001E-5 8 0.0 9 0.003062999111028808 10-11 9.76184831186662E-4 12-13 0.0 14-15 7.365226870031103E-4 16-17 5.260876335736502E-5 18-19 3.507250890491001E-5 20-21 5.8455903672153106E-6 22-23 6.021415309699804E-4 24-25 0.004209879816117128 26-27 0.02181054677093071 28-29 0.3395435509373263 30-31 0.3315550059843593 32-33 0.3421172166982885 34-35 0.18171957483636966 36-37 0.03978100109527834 38-39 0.036247954324841854 40-41 0.012505853326036155 42-43 0.010172422869126141 44-45 0.009447253544088804 46-47 0.005863018500711859 48-49 0.008955973662362027 50-51 0.009016069453287463 52-53 0.002909655328288963 54-55 0.0036335438073659253 56-57 0.0035056371094160065 58-59 0.0041475065903231675 60-61 0.0028653954952319294 62-63 0.0013604210331393941 64-65 4.4010767967896146E-4 66-67 0.006834782545394347 68-69 0.016371171117382864 70-71 0.013727602197243316 72-73 0.01534608486405828 74-75 0.007815299272099924 76-77 0.004883299117019792 78-79 0.0017352655791567676 80-81 0.0013192770798931604 82-83 7.232139806413329E-4 84-85 1.3448653042683035E-4 86-87 0.0 88-89 4.067849269759655E-4 90-91 0.005011700332744166 92-93 0.018437769239189945 94-95 0.0016471351958879754 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 161.0 20-21 510.0 22-23 1119.0 24-25 2499.0 26-27 4083.0 28-29 7182.0 30-31 16748.0 32-33 22238.0 34-35 32262.0 36-37 45806.0 38-39 55060.0 40-41 57668.0 42-43 69108.0 44-45 82363.0 46-47 82254.0 48-49 72406.0 50-51 64716.0 52-53 63331.0 54-55 68579.0 56-57 71905.0 58-59 72491.0 60-61 72427.0 62-63 71641.0 64-65 77894.0 66-67 83051.0 68-69 80822.0 70-71 78568.0 72-73 76233.0 74-75 77313.0 76-77 78345.0 78-79 83721.0 80-81 85114.0 82-83 83245.0 84-85 84663.0 86-87 89963.0 88-89 97413.0 90-91 106223.0 92-93 111139.0 94-95 128410.0 96-97 195300.0 98-99 762930.0 100-101 5136804.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.78515463793663 #Duplication Level Percentage of deduplicated Percentage of total 1 90.6401895457472 78.66222866139559 2 6.725032221519414 11.672659225793376 3 1.5376892126542199 4.003457883158505 4 0.5212103353777001 1.8093327821857803 5 0.233851144498615 1.0147403868785383 6 0.11357598176950665 0.5914025484613263 7 0.07577612716146834 0.46033700395003857 8 0.03900718215600185 0.27081954683190257 9 0.02678089420103583 0.20917656401212031 >10 0.08460664728747297 1.120153076311398 >50 0.0018630128136179315 0.10804991082139348 >100 3.9721927511298164E-4 0.06523914013639424 >500 2.0475538655203862E-5 0.012403270063638673 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.3381672603273342E-5 2 0.0 0.0 0.0 0.0 2.3381672603273342E-5 3 0.0 0.0 0.0 0.0 2.3381672603273342E-5 4 0.0 4.6763345206546683E-5 0.0 2.3381672603273342E-5 3.507250890491001E-5 5 0.0 5.8454181508183354E-5 0.0 2.3381672603273342E-5 3.507250890491001E-5 6 5.8454181508183354E-5 5.8454181508183354E-5 0.0 2.3381672603273342E-5 5.8454181508183354E-5 7 5.8454181508183354E-5 5.8454181508183354E-5 0.0 3.507250890491001E-5 5.8454181508183354E-5 8 5.8454181508183354E-5 9.352669041309337E-5 0.0 3.507250890491001E-5 5.8454181508183354E-5 9 5.8454181508183354E-5 1.4029003561964005E-4 0.0 4.6763345206546683E-5 5.8454181508183354E-5 10-11 5.8454181508183354E-5 1.4029003561964005E-4 0.0 5.8454181508183354E-5 5.8454181508183354E-5 12-13 5.8454181508183354E-5 1.4029003561964005E-4 0.0 6.429959965900168E-5 6.429959965900168E-5 14-15 6.429959965900168E-5 2.0458963527864173E-4 0.0 7.599043596063837E-5 7.014501780982003E-5 16-17 9.937210856391171E-5 2.2212588973109673E-4 0.0 8.768127226227502E-5 8.18358541114567E-5 18-19 1.0521752671473004E-4 2.455075623343701E-4 0.0 1.0521752671473004E-4 8.18358541114567E-5 20-21 1.0521752671473004E-4 2.805800712392801E-4 0.0 1.4613545377045837E-4 9.937210856391171E-5 22-23 1.1690836301636671E-4 3.7410676165237347E-4 0.0 1.7536254452455005E-4 1.2275378116718505E-4 24-25 1.344446174688217E-4 4.3840636131137515E-4 0.0 2.1043505342946008E-4 1.2859919931800337E-4 26-27 1.519808719212767E-4 4.5594261576383015E-4 0.0 3.565705071999184E-4 1.2859919931800337E-4 28-29 1.519808719212767E-4 4.6763345206546683E-4 0.0 7.014501780982002E-4 1.4029003561964005E-4 30-31 1.519808719212767E-4 5.611601424785602E-4 0.0 0.001741934608943864 1.519808719212767E-4 32-33 1.5782629007209505E-4 5.611601424785602E-4 0.0 0.0037819855435794626 1.519808719212767E-4 34-35 1.812079626753684E-4 6.488414147408353E-4 0.0 0.006505950401860807 1.519808719212767E-4 36-37 1.987442171278234E-4 7.540589414555652E-4 0.0 0.010872477760522104 1.519808719212767E-4 38-39 1.987442171278234E-4 7.949768685112936E-4 0.0 0.017577172379510734 1.519808719212767E-4 40-41 1.987442171278234E-4 8.885035589243869E-4 0.0 0.0249950080128992 1.519808719212767E-4 42-43 1.987442171278234E-4 9.586485767342069E-4 0.0 0.03226086277436639 1.519808719212767E-4 44-45 2.1628047158027842E-4 0.0011281657031079386 0.0 0.04069580116599725 1.519808719212767E-4 46-47 2.3381672603273342E-4 0.0012275378116718503 0.0 0.05031735944224423 1.5782629007209505E-4 48-49 2.3381672603273342E-4 0.0012275378116718503 0.0 0.05977524601026829 1.7536254452455005E-4 50-51 2.3381672603273342E-4 0.0014087457743472188 0.0 0.06946110388617427 1.812079626753684E-4 52-53 2.3381672603273342E-4 0.0014262820287996739 0.0 0.07838705740247387 2.1043505342946008E-4 54-55 2.3381672603273342E-4 0.0014730453740062206 0.0 0.08714349379239975 2.3381672603273342E-4 56-57 2.3381672603273342E-4 0.0015314995555144038 0.0 0.09409954139187356 2.455075623343701E-4 58-59 2.455075623343701E-4 0.0015607266462684954 0.0 0.09995080496084272 2.5719839863600673E-4 60-61 2.513529804851884E-4 0.0015782629007209505 0.0 0.10548641594966768 2.5719839863600673E-4 62-63 2.5719839863600673E-4 0.0016133354096258606 0.0 0.11102787235664346 2.5719839863600673E-4 64-65 2.5719839863600673E-4 0.0018997608990159588 0.0 0.11628290327422913 2.5719839863600673E-4 66-67 2.5719839863600673E-4 0.0019289879897700507 0.0 0.12206402182538847 2.5719839863600673E-4 68-69 2.5719839863600673E-4 0.001952369662373324 0.0 0.12792113081250844 2.5719839863600673E-4 70-71 2.5719839863600673E-4 0.001981596753127416 0.0 0.13333398802016622 2.747346530884618E-4 72-73 3.039617438425534E-4 0.0019991330075798705 0.0 0.13774727872403408 3.039617438425534E-4 74-75 3.039617438425534E-4 0.0020342055164847806 0.0 0.141611100121725 3.039617438425534E-4 76-77 3.039617438425534E-4 0.0021043505342946004 0.0 0.14529371355674053 3.039617438425534E-4 78-79 3.039617438425534E-4 0.0021160413705962372 0.0 0.148368403504071 3.039617438425534E-4 80-81 3.039617438425534E-4 0.0021160413705962372 0.0 0.1499934297499985 3.156525801441901E-4 82-83 3.039617438425534E-4 0.002145268461350329 0.0 0.15051367196542131 3.390342527474634E-4 84-85 3.039617438425534E-4 0.002162804715802784 0.0 0.15096376916303433 3.448796708982818E-4 86-87 3.039617438425534E-4 0.002232949733612604 0.0 0.15109236836235232 3.507250890491001E-4 88-89 3.039617438425534E-4 0.002262176824366696 0.0 0.15112744087125723 3.507250890491001E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10990 0.0 51.08688 1 GTATCAA 20305 0.0 37.34812 1 TCAACGC 25055 0.0 29.927927 4 ATCAACG 25230 0.0 29.720865 3 TATCAAC 25840 0.0 29.167397 2 CAACGCA 25825 0.0 29.019163 5 AACGCAG 26670 0.0 28.179293 6 ACGCAGA 30990 0.0 24.210024 7 CGCAGAG 31575 0.0 23.761477 8 GTGGTAT 5565 0.0 20.818274 1 GCAGAGT 36265 0.0 20.560266 9 GTACATG 27925 0.0 20.485376 1 TACATGG 27565 0.0 19.829195 2 TGGTATC 5325 0.0 19.764202 2 ACATGGG 27600 0.0 19.40405 3 GAGTACT 20655 0.0 19.27045 12-13 AGAGTAC 33165 0.0 18.347988 10-11 CAGAGTA 35535 0.0 18.2229 10-11 GTACTTT 22940 0.0 17.323523 14-15 CATGGGG 19405 0.0 17.210583 4 >>END_MODULE