##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139650_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8392660 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.59250142386323 34.0 31.0 34.0 31.0 34.0 2 32.735115088660805 34.0 31.0 34.0 31.0 34.0 3 32.805757650137146 34.0 31.0 34.0 31.0 34.0 4 36.28224853622093 37.0 37.0 37.0 35.0 37.0 5 36.21375428052608 37.0 37.0 37.0 35.0 37.0 6 36.24075108487655 37.0 37.0 37.0 35.0 37.0 7 36.18989760099897 37.0 37.0 37.0 35.0 37.0 8 36.16679813074758 37.0 37.0 37.0 35.0 37.0 9 37.89147540827342 39.0 38.0 39.0 35.0 39.0 10-11 37.829466462361154 39.0 38.0 39.0 35.0 39.0 12-13 37.79706803325763 39.0 38.0 39.0 35.0 39.0 14-15 39.17978239318643 40.0 39.0 41.0 36.0 41.0 16-17 39.14134863082741 40.0 39.0 41.0 36.0 41.0 18-19 39.02561750386647 40.0 38.5 41.0 36.0 41.0 20-21 39.08660131480409 40.0 39.0 41.0 36.0 41.0 22-23 39.00233792694098 40.0 38.5 41.0 35.0 41.0 24-25 38.8926357458498 40.0 38.0 41.0 35.0 41.0 26-27 38.84276808732726 40.0 38.0 41.0 35.0 41.0 28-29 38.73062838664561 40.0 38.0 41.0 35.0 41.0 30-31 38.663893272589576 40.0 38.0 41.0 35.0 41.0 32-33 38.535400329093065 40.0 38.0 41.0 34.0 41.0 34-35 38.30393479507174 40.0 38.0 41.0 34.0 41.0 36-37 38.56698477235962 40.0 38.0 41.0 34.5 41.0 38-39 38.659299698297616 40.0 38.0 41.0 35.0 41.0 40-41 38.650893848691695 40.0 38.0 41.0 35.0 41.0 42-43 38.57799165399129 40.0 38.0 41.0 34.0 41.0 44-45 38.50272331992254 40.0 38.0 41.0 34.0 41.0 46-47 38.42647322360068 40.0 38.0 41.0 34.0 41.0 48-49 38.35615756218766 40.0 38.0 41.0 34.0 41.0 50-51 38.275219958353006 40.0 38.0 41.0 33.5 41.0 52-53 38.173020071948955 40.0 37.5 41.0 33.0 41.0 54-55 38.04945301689686 40.0 37.0 41.0 33.0 41.0 56-57 37.898020133787014 40.0 37.0 41.0 33.0 41.0 58-59 37.72294033426147 39.5 36.0 41.0 33.0 41.0 60-61 37.55037850281331 39.0 36.0 41.0 33.0 41.0 62-63 37.32684173457741 39.0 35.5 41.0 32.0 41.0 64-65 37.03578966001167 38.5 35.0 40.0 32.0 41.0 66-67 36.71042224016804 38.0 35.0 40.0 31.5 41.0 68-69 36.39008042700962 37.0 35.0 40.0 31.0 41.0 70-71 36.04867792805543 37.0 35.0 39.5 31.0 41.0 72-73 35.72675911139467 36.0 34.5 39.0 31.0 41.0 74-75 35.3967524510573 36.0 34.0 39.0 31.0 40.0 76-77 34.4841693420874 35.0 33.5 37.0 29.5 39.0 78-79 34.723997791667045 35.0 34.0 37.0 30.0 39.0 80-81 34.52941534388121 35.0 34.0 37.0 30.0 39.0 82-83 34.28209038981723 35.0 34.0 36.0 30.0 38.5 84-85 34.02610776284763 35.0 34.0 36.0 30.0 37.0 86-87 33.8195547094038 35.0 34.0 35.5 30.0 37.0 88-89 33.61626192514781 35.0 33.0 35.0 29.5 36.5 90-91 33.43761917459899 35.0 33.0 35.0 29.0 36.0 92-93 33.30677880810978 35.0 33.0 35.0 29.0 36.0 94-95 33.25126493847178 35.0 33.0 35.0 29.0 36.0 96-97 33.246855052521106 35.0 33.0 35.0 29.0 35.0 98-99 33.333336744701356 35.0 33.0 35.0 29.5 35.0 100-101 31.738529923635156 33.5 30.0 34.5 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 1.0 19 6.0 20 39.0 21 205.0 22 1075.0 23 3567.0 24 9325.0 25 19326.0 26 34284.0 27 54256.0 28 78449.0 29 106112.0 30 137007.0 31 172652.0 32 217284.0 33 281372.0 34 389773.0 35 565140.0 36 939197.0 37 1818458.0 38 2359886.0 39 1142656.0 40 62589.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.94118193755019 21.21527620563683 15.468421215681321 24.375120641131655 2 13.67516967894456 21.545186551513765 41.50399412796462 23.27564964157706 3 16.910501544108158 26.431852442433907 31.234930244346465 25.422715769111477 4 11.959295384300091 18.64256385937236 38.86616400521408 30.531976751113472 5 12.958430342704219 37.97222811361356 35.77384285792585 13.295498685756362 6 29.84299375883212 38.35795802522681 18.570357907981496 13.228690307959573 7 26.329459313257058 32.89074024206867 23.115496159739582 17.664304284934694 8 24.329318714209798 37.161889079266885 20.88038833933461 17.62840386718871 9 25.326699880797083 16.949120229083128 21.345937258561662 36.37824263155813 10-11 23.962336193582736 27.06324102406576 28.947259458712658 20.02716332363884 12-13 24.79332535811054 24.584923016064035 29.102811266034845 21.518940359790577 14-15 21.885449310755824 26.02304721100103 26.784253602489528 25.307249875753623 16-17 21.42170998589957 29.17058775448148 27.490737733260538 21.91696452635841 18-19 21.501127622567704 28.2253028912475 29.3308704662379 20.9426990199469 20-21 22.241633911922694 27.349628349286014 29.306566172844246 21.102171565947046 22-23 21.945318251551104 27.29223125833705 29.14928552515456 21.61316496495728 24-25 21.75889793518988 27.43533791247692 29.211677006847736 21.594087145485467 26-27 21.68278969958361 27.593261328481468 29.149217231198897 21.574731740736024 28-29 21.6465348130346 27.59572362910901 29.165971706425577 21.59176985143082 30-31 21.91042490128344 27.48625947307278 29.080850086509713 21.52246553913406 32-33 21.639897020444344 27.660211646049166 29.036421793589607 21.663469539916882 34-35 21.859239621037606 27.67587896365475 28.978143043893105 21.48673837141454 36-37 21.78522531848966 27.591711756390065 28.953373810163257 21.669689114957016 38-39 21.637583131684973 27.683151653476166 29.042947905708694 21.63631730913016 40-41 21.8800354644128 27.60752107275889 28.883129919025606 21.629313543802713 42-43 21.81444683460867 27.704168447636484 28.66070640546226 21.82067831229259 44-45 21.905471646070325 27.778353620449316 28.48661743005676 21.8295573034236 46-47 21.979400096110904 27.76967626010688 28.195088153281905 22.055835490500307 48-49 21.90080988245675 27.90290234141115 28.142016197649134 22.054271578482968 50-51 21.92073094204172 27.995777942929152 28.043094976266815 22.040396138762315 52-53 22.079010541670378 27.914875320239986 27.961451607781434 22.044662530308198 54-55 22.05824759462749 27.87913005148548 27.960443960395708 22.102178393491325 56-57 22.058953896817187 27.96878901397643 27.921947039170288 22.0503100500361 58-59 21.999496337954476 28.04599264947293 27.92615152014691 22.028359492425686 60-61 22.106794786708846 28.062107165330836 27.835770874040804 21.995327173919517 62-63 22.075836801023907 28.138932417176893 27.83279717784517 21.952433603954027 64-65 22.076822054734137 27.998640515467404 27.821236807686812 22.10330062211165 66-67 22.098460185453998 28.04639621048242 27.725325805329952 22.12981779873363 68-69 22.053842919026902 28.023395591087752 27.81006821927809 22.11269327060726 70-71 22.041380233142483 27.831327416689494 27.86842239865106 22.258869951516964 72-73 22.092584546416987 27.83969672102532 27.804596545671657 22.263122186886037 74-75 21.994794760609324 28.010029887331196 27.739630139586303 22.255545212473177 76-77 22.095782635674617 27.90357367535246 27.72973474006552 22.270908948907405 78-79 22.051484089233305 27.90207758034901 27.701642401723365 22.34479592869432 80-81 22.051100211071493 27.931360457031563 27.718037144781004 22.299502187115937 82-83 22.110454273278723 27.88076657728255 27.765210190736084 22.243568958702646 84-85 22.156428129724173 27.881845970595048 27.74172333335952 22.220002566321263 86-87 22.060496937997527 27.871951260612267 27.81849752282292 22.249054278567286 88-89 22.088928378434073 27.808301845435267 27.83020580279884 22.272563973331817 90-91 22.094891679735127 27.858987083561527 27.81917422269906 22.226947014004285 92-93 22.139418038501503 27.738875615734692 27.89406387113565 22.227642474628155 94-95 21.997098917909913 27.74278156872051 27.927184257215533 22.332935256154045 96-97 21.96468480842946 27.79938151622275 28.01905511462346 22.21687856072433 98-99 22.115590257500443 28.33494672954684 28.03375172708783 21.515711285864885 100-101 20.463531575614518 31.964034774659012 25.994503471782192 21.57793017794428 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2568.0 1 2065.0 2 2139.5 3 2909.5 4 3856.0 5 5728.5 6 7470.5 7 9612.0 8 11633.0 9 12159.5 10 11242.0 11 10295.5 12 11431.5 13 15407.5 14 24892.5 15 37666.5 16 47573.5 17 52485.0 18 52778.5 19 50044.5 20 45652.0 21 41075.5 22 38902.0 23 41380.5 24 48359.5 25 59710.5 26 74505.0 27 90279.0 28 107607.0 29 126616.0 30 144915.0 31 163558.0 32 183918.0 33 205393.5 34 225901.0 35 243990.5 36 264646.5 37 281650.0 38 293584.0 39 305854.0 40 315875.0 41 324706.5 42 329505.5 43 333871.0 44 338548.5 45 342020.5 46 344671.0 47 343731.0 48 340287.0 49 335734.5 50 330157.5 51 320480.5 52 306164.0 53 288598.0 54 270247.5 55 251498.5 56 230215.0 57 206451.0 58 182881.0 59 158351.0 60 132693.0 61 108286.5 62 85738.0 63 65722.0 64 48585.0 65 35904.5 66 26856.5 67 20356.0 68 15578.5 69 11347.0 70 8003.5 71 5783.0 72 4037.5 73 2673.5 74 1752.5 75 1116.5 76 703.0 77 461.5 78 301.0 79 198.5 80 133.0 81 92.0 82 69.0 83 48.0 84 34.0 85 23.5 86 15.5 87 11.5 88 8.0 89 6.0 90 4.5 91 4.0 92 3.5 93 2.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.004051158988926037 3 0.005206930818119643 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0029549630272166392 10-11 0.0011140687219546605 12-13 0.0 14-15 7.268255833073185E-4 16-17 7.149104098104772E-5 18-19 2.9787933742103217E-5 20-21 0.0 22-23 5.958191607815623E-4 24-25 0.00432047225085818 26-27 0.021382829427017667 28-29 0.3356106401241523 30-31 0.32801862907940255 32-33 0.33875026666301344 34-35 0.18018054765097063 36-37 0.03939016722423736 38-39 0.0361385852079909 40-41 0.013736216878965838 42-43 0.010615691721784245 44-45 0.009300574533097553 46-47 0.006156413615589288 48-49 0.009698740972340691 50-51 0.009829741506391683 52-53 0.003380267840131769 54-55 0.004134871909925073 56-57 0.0042469467509621646 58-59 0.004775312056475674 60-61 0.0033678679853976125 62-63 0.001701946005062188 64-65 7.407479237509104E-4 66-67 0.0064873611720009565 68-69 0.015441882024708246 70-71 0.012344962811059755 72-73 0.013759169947056985 74-75 0.007078952906770262 76-77 0.004248166744406688 78-79 0.0013734684922713481 80-81 0.0010747203332773553 82-83 5.916830661489834E-4 84-85 1.2719360332894092E-4 86-87 0.0 88-89 4.297884865036822E-4 90-91 0.0046415030744506435 92-93 0.017466115380034418 94-95 0.0015304230379251718 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 137.0 20-21 507.0 22-23 1064.0 24-25 2588.0 26-27 4038.0 28-29 6608.0 30-31 15385.0 32-33 20004.0 34-35 29742.0 36-37 41781.0 38-39 49837.0 40-41 53005.0 42-43 63767.0 44-45 76669.0 46-47 76128.0 48-49 67224.0 50-51 59764.0 52-53 58087.0 54-55 62016.0 56-57 65248.0 58-59 65786.0 60-61 65792.0 62-63 65333.0 64-65 70601.0 66-67 74305.0 68-69 73537.0 70-71 72862.0 72-73 69903.0 74-75 71653.0 76-77 73276.0 78-79 77309.0 80-81 78993.0 82-83 77428.0 84-85 79525.0 86-87 85275.0 88-89 92477.0 90-91 101368.0 92-93 106612.0 94-95 123585.0 96-97 192622.0 98-99 766532.0 100-101 5154287.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.08613233356779 #Duplication Level Percentage of deduplicated Percentage of total 1 90.78558627187266 79.06165580052836 2 6.632635598648659 11.552211629284995 3 1.5344291879944665 4.008825099665252 4 0.5037410621336996 1.754754431953094 5 0.22128160481793505 0.9635279560079473 6 0.11600288427014337 0.6061345518375152 7 0.0628032825604462 0.3828506483229028 8 0.03949073143788051 0.27512760511589185 9 0.022609447872824123 0.1772072432497498 >10 0.07968676424500142 1.0703810601610169 >50 0.001432832090010584 0.08094056374858158 >100 2.7994375826761244E-4 0.0545405716063833 >500 2.0388297897338408E-5 0.011842838518321241 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.3830346993682574E-5 0.0 0.0 0.0 3 0.0 2.3830346993682574E-5 0.0 0.0 0.0 4 0.0 4.766069398736515E-5 0.0 1.1915173496841287E-5 0.0 5 0.0 4.766069398736515E-5 0.0 1.1915173496841287E-5 0.0 6 3.574552049052386E-5 4.766069398736515E-5 0.0 1.1915173496841287E-5 0.0 7 3.574552049052386E-5 4.766069398736515E-5 0.0 1.1915173496841287E-5 0.0 8 4.766069398736515E-5 4.766069398736515E-5 0.0 1.1915173496841287E-5 0.0 9 4.766069398736515E-5 7.149104098104772E-5 0.0 1.1915173496841287E-5 0.0 10-11 5.9575867484206435E-5 8.340621447788902E-5 0.0 1.1915173496841287E-5 0.0 12-13 5.9575867484206435E-5 8.936380122630966E-5 0.0 1.1915173496841287E-5 0.0 14-15 6.553345423262708E-5 1.7277001570419867E-4 0.0 2.3830346993682574E-5 0.0 16-17 7.744862772946838E-5 1.787276024526193E-4 0.0 4.766069398736515E-5 0.0 18-19 8.340621447788902E-5 2.0255794944630187E-4 0.0 5.9575867484206435E-5 0.0 20-21 8.936380122630966E-5 2.2638829643998446E-4 0.0 7.744862772946838E-5 0.0 22-23 9.53213879747303E-5 2.3830346993682574E-4 0.0 9.53213879747303E-5 0.0 24-25 1.0127897472315094E-4 2.8596416392419094E-4 0.0 9.53213879747303E-5 0.0 26-27 1.0723656147157159E-4 3.097945109178735E-4 0.0 1.2510932171683352E-4 0.0 28-29 1.0723656147157159E-4 3.1575209766629414E-4 0.0 4.0511589889260374E-4 0.0 30-31 1.0723656147157159E-4 3.4554003140839734E-4 0.0 0.001239178043671494 0.0 32-33 1.3106690846525416E-4 3.574552049052386E-4 0.0 0.0031158178694239967 0.0 34-35 1.370244952136748E-4 3.6341279165365926E-4 0.0 0.005719283278483818 1.1915173496841287E-5 36-37 1.4298208196209544E-4 3.812855518989212E-4 0.0 0.009401071889007776 1.1915173496841287E-5 38-39 1.4298208196209544E-4 4.0511589889260374E-4 0.0 0.01544802243865473 1.1915173496841287E-5 40-41 1.5489725545893675E-4 4.2894624588628636E-4 0.0 0.02222775615835742 1.1915173496841287E-5 42-43 1.5489725545893675E-4 4.4086141938312764E-4 0.0 0.0283104522284949 1.1915173496841287E-5 44-45 1.6681242895577803E-4 5.18310047112596E-4 0.0 0.035787223597762804 2.3830346993682574E-5 46-47 1.787276024526193E-4 5.600131543515405E-4 0.0 0.044461469903463266 2.3830346993682574E-5 48-49 1.787276024526193E-4 5.659707410999612E-4 0.0 0.052700812376529016 3.574552049052386E-5 50-51 1.787276024526193E-4 6.612921290746914E-4 0.0 0.06043971756272743 3.574552049052386E-5 52-53 1.787276024526193E-4 6.672497158231121E-4 0.0 0.06870289038278686 3.574552049052386E-5 54-55 1.787276024526193E-4 6.732073025715328E-4 0.0 0.07672180214616105 3.574552049052386E-5 56-57 1.787276024526193E-4 7.02995236313636E-4 0.0 0.08333472343690797 3.574552049052386E-5 58-59 1.787276024526193E-4 7.268255833073185E-4 0.0 0.08845824804054972 3.574552049052386E-5 60-61 1.8468518920103995E-4 7.387407568041598E-4 0.0 0.09351028160321043 3.574552049052386E-5 62-63 1.906427759494606E-4 7.625711037978424E-4 0.0 0.09860401827311008 4.766069398736515E-5 64-65 1.906427759494606E-4 8.69807665269414E-4 0.0 0.10353094251405395 4.766069398736515E-5 66-67 1.906427759494606E-4 8.69807665269414E-4 0.0 0.10870212781168306 4.766069398736515E-5 68-69 2.025579494463019E-4 8.69807665269414E-4 0.0 0.1139388465635448 4.766069398736515E-5 70-71 2.025579494463019E-4 8.69807665269414E-4 0.0 0.1192172684226455 4.766069398736515E-5 72-73 2.025579494463019E-4 8.69807665269414E-4 0.0 0.12335183362604943 4.766069398736515E-5 74-75 2.025579494463019E-4 8.817228387662553E-4 0.0 0.12658680323044186 4.766069398736515E-5 76-77 2.0851553619472254E-4 9.174683592567791E-4 0.0 0.12959538453839425 4.766069398736515E-5 78-79 2.1447312294314318E-4 9.174683592567791E-4 0.0 0.1322345954679446 4.766069398736515E-5 80-81 2.1447312294314318E-4 9.174683592567791E-4 0.0 0.13351547661885504 4.766069398736515E-5 82-83 2.2043070969156382E-4 9.174683592567791E-4 0.0 0.13401591390572237 5.9575867484206435E-5 84-85 2.323458831884051E-4 9.174683592567791E-4 0.0 0.13432570841664027 5.9575867484206435E-5 86-87 2.3830346993682574E-4 9.293835327536204E-4 0.0 0.13444486015160867 5.9575867484206435E-5 88-89 2.3830346993682574E-4 9.591714664957235E-4 0.0 0.13447464808535078 5.9575867484206435E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10470 0.0 52.183514 1 GTATCAA 19655 0.0 37.86822 1 TCAACGC 24525 0.0 29.772482 4 ATCAACG 24740 0.0 29.531027 3 CAACGCA 25150 0.0 29.032608 5 TATCAAC 25805 0.0 28.462196 2 AACGCAG 25930 0.0 28.2582 6 ACGCAGA 29850 0.0 24.532917 7 CGCAGAG 30730 0.0 23.788649 8 TGGTATC 5070 0.0 21.4178 2 GTGGTAT 5500 0.0 21.37564 1 GCAGAGT 35055 0.0 20.719885 9 GTACATG 24885 0.0 20.581087 1 TACATGG 24945 0.0 20.103128 2 GAGTACT 21155 0.0 19.3286 12-13 ACATGGG 25165 0.0 19.247272 3 AGAGTAC 31840 0.0 18.978088 10-11 CAGAGTA 34530 0.0 18.12484 10-11 GTACTTT 23045 0.0 17.734434 14-15 AGTACTT 23075 0.0 16.756964 12-13 >>END_MODULE