##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139649_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10174942 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.58552176513635 34.0 31.0 34.0 31.0 34.0 2 32.728985383897026 34.0 31.0 34.0 31.0 34.0 3 32.80005674725222 34.0 31.0 34.0 31.0 34.0 4 36.27759588211903 37.0 37.0 37.0 35.0 37.0 5 36.209635003324834 37.0 37.0 37.0 35.0 37.0 6 36.2358186415215 37.0 37.0 37.0 35.0 37.0 7 36.18306669463079 37.0 37.0 37.0 35.0 37.0 8 36.16129605456228 37.0 37.0 37.0 35.0 37.0 9 37.88261977316431 39.0 38.0 39.0 35.0 39.0 10-11 37.819234890970385 39.0 38.0 39.0 35.0 39.0 12-13 37.78725765709524 39.0 38.0 39.0 35.0 39.0 14-15 39.166437803773235 40.0 39.0 41.0 36.0 41.0 16-17 39.1267361032623 40.0 38.5 41.0 36.0 41.0 18-19 39.01291299744018 40.0 38.5 41.0 35.5 41.0 20-21 39.078292866017804 40.0 39.0 41.0 36.0 41.0 22-23 38.99259662148704 40.0 38.5 41.0 35.0 41.0 24-25 38.88134450398384 40.0 38.0 41.0 35.0 41.0 26-27 38.82840017500578 40.0 38.0 41.0 35.0 41.0 28-29 38.71710141774951 40.0 38.0 41.0 35.0 41.0 30-31 38.64547038781184 40.0 38.0 41.0 35.0 41.0 32-33 38.51454222632788 40.0 38.0 41.0 34.0 41.0 34-35 38.279211024638144 40.0 38.0 41.0 34.0 41.0 36-37 38.542306481284484 40.0 38.0 41.0 34.0 41.0 38-39 38.62432482692772 40.0 38.0 41.0 35.0 41.0 40-41 38.62909382184347 40.0 38.0 41.0 34.5 41.0 42-43 38.56370891966115 40.0 38.0 41.0 34.0 41.0 44-45 38.49287220176358 40.0 38.0 41.0 34.0 41.0 46-47 38.41955407312139 40.0 38.0 41.0 34.0 41.0 48-49 38.35263426429065 40.0 38.0 41.0 34.0 41.0 50-51 38.26431029155325 40.0 38.0 41.0 33.0 41.0 52-53 38.167883111524176 40.0 37.5 41.0 33.0 41.0 54-55 38.051148015189824 40.0 37.0 41.0 33.0 41.0 56-57 37.89569171449015 40.0 37.0 41.0 33.0 41.0 58-59 37.722009720460115 39.5 36.0 41.0 33.0 41.0 60-61 37.551963789591966 39.0 36.0 41.0 33.0 41.0 62-63 37.33868043469131 39.0 35.5 41.0 32.0 41.0 64-65 37.06356619476058 38.5 35.0 40.0 32.0 41.0 66-67 36.7473933537085 38.0 35.0 40.0 31.5 41.0 68-69 36.43497927415878 37.5 35.0 40.0 31.0 41.0 70-71 36.09994823692638 37.0 35.0 39.5 31.0 41.0 72-73 35.787361499227885 36.5 34.5 39.0 31.0 41.0 74-75 35.45837994802455 36.0 34.0 39.0 31.0 40.0 76-77 34.54175893116076 35.0 33.5 37.0 29.5 39.0 78-79 34.78201521466205 35.0 34.0 37.0 30.0 39.0 80-81 34.583929146205335 35.0 34.0 37.0 30.0 39.0 82-83 34.33042446915083 35.0 34.0 36.5 30.0 38.5 84-85 34.06783757898038 35.0 34.0 36.0 30.0 37.0 86-87 33.85484140620353 35.0 34.0 36.0 30.0 37.0 88-89 33.64928183485063 35.0 33.5 35.0 29.5 36.5 90-91 33.46343981921778 35.0 33.0 35.0 29.0 36.0 92-93 33.32473616775444 35.0 33.0 35.0 29.0 36.0 94-95 33.2692560855932 35.0 33.0 35.0 29.0 36.0 96-97 33.26210741361521 35.0 33.0 35.0 29.0 35.5 98-99 33.34840073940317 35.0 33.0 35.0 30.0 35.0 100-101 31.75016221088419 33.5 30.0 34.5 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 4.0 19 13.0 20 46.0 21 263.0 22 1379.0 23 4501.0 24 11575.0 25 23900.0 26 42103.0 27 67136.0 28 96302.0 29 129078.0 30 166189.0 31 209191.0 32 262847.0 33 341643.0 34 468512.0 35 675153.0 36 1120387.0 37 2162514.0 38 2876609.0 39 1436891.0 40 78706.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.44294527113228 21.501068163441932 15.48279248007433 24.573194085351453 2 13.448309346635048 21.598082977411828 41.85121904426426 23.10238863168886 3 16.64360896816701 26.753780735243758 31.60080184964808 25.001808446941148 4 11.673581203075281 18.989790702471886 38.98553318392706 30.351094910525774 5 12.673075942160256 38.106609168544566 36.09946239491708 13.120852494378099 6 29.352897476260548 38.8023576746047 18.66246693715472 13.18227791198003 7 25.78422813459066 33.0971452316038 23.21577098088333 17.902855652922213 8 23.998043428650504 37.36666017359116 21.168228772213148 17.467067625545187 9 24.990508266481683 16.982807160899895 21.386784774659905 36.63989979795851 10-11 23.638446940603348 27.124995565037775 29.269227318030673 19.9673301763282 12-13 24.5355513837598 24.620755804836815 29.298217586803815 21.54547522459957 14-15 21.697265809565355 26.10749132925594 26.829097139409996 25.366145721768714 16-17 21.326794390628937 29.406180627645135 27.45574112863101 21.81128385309492 18-19 21.39311983132676 28.36607038302292 29.247662848511286 20.993146937139038 20-21 22.068164203129616 27.465162001386584 29.235849117799052 21.23082467768475 22-23 21.73495819511365 27.615075304919596 29.074745938627782 21.57522056133897 24-25 21.679242672216642 27.802292953053865 29.13640064816342 21.382063726566074 26-27 21.658346626316586 27.95478969349715 29.059479387171343 21.327384293014923 28-29 21.473762646815754 27.875630128824252 29.13162550592569 21.5189817184343 30-31 21.95767803603192 27.702093843401038 29.048049560208344 21.292178560358703 32-33 21.343605750254532 28.055043693688763 29.079218588672834 21.52213196738387 34-35 21.682312527459736 27.965119487556798 29.12754540360559 21.22502258137787 36-37 21.499245378821623 27.931658777377454 29.05789744848842 21.51119839531251 38-39 21.445879210348558 27.75066205060101 29.20943600304198 21.59402273600846 40-41 21.66521654187778 27.65104286974069 29.135674473558915 21.548066114822614 42-43 21.711283636004 27.695349042700318 28.96330601163773 21.630061309657954 44-45 21.64241112711538 27.94429287660095 28.71130196990499 21.70199402637868 46-47 21.904191258285802 27.735155745200892 28.31507412063673 22.045578875876576 48-49 21.766235558171093 27.868328058200532 28.33637342583635 22.029062957792025 50-51 21.67673501666812 28.004402367381363 28.349694533471403 21.969168082479115 52-53 21.840040967524637 28.009887244504444 28.36760101808684 21.782470769884082 54-55 21.826463638470006 27.98474832711016 28.161614986017874 22.02717304840196 56-57 21.960470017266562 28.207322873624502 27.932671880305566 21.89953522880337 58-59 21.711569532971208 28.382955612588596 28.24275478098923 21.662720073450963 60-61 21.980312226133385 28.514853714891174 27.838011305790516 21.66682275318492 62-63 21.78956974781132 28.687779009637186 27.81517093394713 21.707480308604364 64-65 21.792258762752965 28.488192165426746 27.87571106473464 21.84383800708564 66-67 21.878248881511205 28.37765690722136 27.810947599043946 21.933146612223485 68-69 21.877586568439995 28.26531671867716 27.915579802053013 21.94151691082983 70-71 21.873163803549332 28.050762610139873 28.0078341287114 22.068239457599393 72-73 21.94784360716009 28.048154772022237 27.932779102498305 22.07122251831936 74-75 21.777336051215272 28.20062138528464 27.915012783383762 22.10702978011632 76-77 21.8739280242846 28.12691893192537 27.89015426873412 22.108998775055912 78-79 21.865976381435274 28.088110364147926 27.860665027243275 22.185248227173517 80-81 21.901946212256632 28.09480316271735 27.85064510520761 22.152605519818405 82-83 21.936365374857342 28.057263245639568 27.934531334394837 22.071840045108253 84-85 21.997715938929886 28.02487643151879 27.915901468178106 22.061506161373217 86-87 21.894862547821166 28.050358661135515 27.961415319960565 22.093363471082753 88-89 21.9156054899211 28.015169010958612 27.950169991990915 22.11905550712937 90-91 21.955023629401353 28.02241061551623 27.964481397029182 22.05808435805324 92-93 21.99169846320616 27.930588707947972 28.03412395304057 22.043588875805295 94-95 21.81115956838928 27.907656254454622 28.120235032436742 22.160949144719357 96-97 21.789312941679462 27.958304713153296 28.15766549921189 22.09471684595535 98-99 21.947609926611598 28.485595676549725 28.210831896576288 21.355962500262393 100-101 20.259586124046997 32.141877101476496 26.180649329677543 21.417887444798968 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2763.0 1 2280.5 2 2537.5 3 3474.0 4 4622.0 5 6953.0 6 9027.5 7 11244.0 8 13120.5 9 13528.5 10 12746.0 11 12080.5 12 13806.5 13 18684.5 14 29931.5 15 45322.5 16 57565.5 17 63912.5 18 64393.5 19 60861.0 20 55562.0 21 51052.0 22 49477.0 23 52835.5 24 61705.5 25 76459.0 26 95782.0 27 116555.0 28 138781.5 29 163558.0 30 186806.5 31 209839.0 32 235965.5 33 261759.0 34 286235.0 35 308752.0 36 333018.5 37 351920.5 38 363688.0 39 377820.0 40 391412.5 41 401432.0 42 405571.5 43 409116.5 44 414633.0 45 420649.5 46 430479.5 47 436115.5 48 427245.5 49 415361.5 50 405109.5 51 386011.5 52 362990.0 53 339447.5 54 314563.0 55 290707.5 56 265688.0 57 238328.5 58 211276.5 59 182614.0 60 152096.0 61 123067.5 62 96469.5 63 73119.5 64 53884.0 65 39626.5 66 29644.0 67 22653.0 68 16920.0 69 12068.5 70 8647.5 71 6063.5 72 4088.0 73 2646.0 74 1693.5 75 1065.0 76 693.5 77 459.5 78 303.0 79 210.5 80 149.0 81 95.0 82 69.0 83 48.0 84 31.5 85 23.0 86 17.5 87 14.0 88 11.0 89 8.5 90 6.0 91 5.0 92 4.0 93 2.5 94 2.0 95 2.0 96 2.0 97 1.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 9.828065850399933E-6 2 0.004068819262065573 3 0.004579878686286369 4 9.828065850399933E-6 5 9.828065850399933E-6 6 9.828065850399933E-6 7 9.828065850399933E-6 8 0.0 9 0.00293859168926958 10-11 0.0010712591776935927 12-13 4.9140329251999665E-6 14-15 6.437383132011957E-4 16-17 4.42262963267997E-5 18-19 2.4570164625999834E-5 20-21 1.4742496499271352E-5 22-23 5.012816346184703E-4 24-25 0.0042370180004941875 26-27 0.021196412864821317 28-29 0.3339199578964499 30-31 0.32609447786197626 32-33 0.33681517316106835 34-35 0.17917412709964498 36-37 0.0392495517514311 38-39 0.03615400556690711 40-41 0.013225723201560726 42-43 0.010831172418181333 44-45 0.01002061558976816 46-47 0.006264922410432509 48-49 0.00977951594157487 50-51 0.009579728432828422 52-53 0.0032835649049829 54-55 0.003934486370955227 56-57 0.004013314075171905 58-59 0.0048243380730777895 60-61 0.003361468790492448 62-63 0.0018863127097031869 64-65 5.942790660489603E-4 66-67 0.006681670363139141 68-69 0.015995812506349252 70-71 0.012949981393104692 72-73 0.014227914899364615 74-75 0.007403241849993144 76-77 0.00474632082327658 78-79 0.0015611775562936123 80-81 0.0012120827757038375 82-83 6.380631030780411E-4 84-85 6.89555781270148E-5 86-87 0.0 88-89 5.275031116250621E-4 90-91 0.004622631962104864 92-93 0.017539307492662092 94-95 0.001513281817797356 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 155.0 20-21 618.0 22-23 1276.0 24-25 2819.0 26-27 4827.0 28-29 8467.0 30-31 19521.0 32-33 26239.0 34-35 38571.0 36-37 53685.0 38-39 63606.0 40-41 66862.0 42-43 80360.0 44-45 94788.0 46-47 94800.0 48-49 84439.0 50-51 74771.0 52-53 73611.0 54-55 81113.0 56-57 89131.0 58-59 88999.0 60-61 91963.0 62-63 91716.0 64-65 98412.0 66-67 107990.0 68-69 95632.0 70-71 89925.0 72-73 86637.0 74-75 88209.0 76-77 89449.0 78-79 94381.0 80-81 96821.0 82-83 95236.0 84-85 96590.0 86-87 103557.0 88-89 112006.0 90-91 122289.0 92-93 128516.0 94-95 149094.0 96-97 230034.0 98-99 908286.0 100-101 6149541.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.98768586267086 #Duplication Level Percentage of deduplicated Percentage of total 1 89.45122335131356 76.02252470213045 2 7.389920717008702 12.56104520894358 3 1.7998993299214856 4.58907836507397 4 0.6452925879595213 2.1936769502005475 5 0.2828421990395049 1.2019051980338236 6 0.16256206837164003 0.8289464399972978 7 0.0798478483261074 0.47502586952445836 8 0.048023958018411236 0.3265156046360662 9 0.03638167922397269 0.2782795252539104 >10 0.10156725994914907 1.2989514387673629 >50 0.0019384362638656723 0.1070769198954955 >100 4.266331058836399E-4 0.06798139365428266 >500 5.5450319944425885E-5 0.03023855341905694 >1k 1.8481178216694374E-5 0.01875383046971034 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 9.828065850399933E-6 0.0 0.0 0.0 3 0.0 9.828065850399933E-6 0.0 9.828065850399933E-6 0.0 4 0.0 6.879646095279954E-5 0.0 1.9656131700799866E-5 0.0 5 0.0 9.828065850399934E-5 0.0 1.9656131700799866E-5 0.0 6 0.0 9.828065850399934E-5 0.0 2.94841975511998E-5 0.0 7 0.0 9.828065850399934E-5 0.0 4.914032925199967E-5 0.0 8 0.0 1.2776485605519913E-4 0.0 6.879646095279954E-5 0.0 9 0.0 1.769051853071988E-4 0.0 7.862452680319946E-5 0.0 10-11 0.0 1.769051853071988E-4 0.0 1.0810872435439926E-4 0.0 12-13 0.0 1.769051853071988E-4 0.0 1.2285082312999917E-4 4.9140329251999665E-6 14-15 0.0 2.063893828583986E-4 0.0 1.3759292190559908E-4 9.828065850399933E-6 16-17 0.0 2.2604551455919847E-4 0.0 1.47420987755999E-4 1.9656131700799866E-5 18-19 0.0 2.4570164625999834E-4 0.0 1.621630865315989E-4 2.4570164625999834E-5 20-21 0.0 2.653577779607982E-4 0.0 1.9656131700799867E-4 2.94841975511998E-5 22-23 0.0 2.94841975511998E-4 0.0 2.506156791851983E-4 4.914032925199967E-5 24-25 0.0 3.1449810721279785E-4 0.0 3.0467004136239793E-4 7.862452680319946E-5 26-27 0.0 3.292402059883978E-4 0.0 3.7838053524039746E-4 7.862452680319946E-5 28-29 0.0 3.3415423891359775E-4 0.0 6.584804119767955E-4 7.862452680319946E-5 30-31 0.0 3.7838053524039746E-4 0.0 0.0016658571616427888 7.862452680319946E-5 32-33 0.0 4.0786473279159723E-4 0.0 0.003675696628049575 8.353855972839942E-5 34-35 0.0 4.914032925199967E-4 0.0 0.006545491856366356 8.84525926535994E-5 36-37 0.0 5.700278193231962E-4 0.0 0.011061488114625125 8.84525926535994E-5 38-39 0.0 5.749418522483961E-4 0.0 0.01781828338677508 8.84525926535994E-5 40-41 0.0 6.928786424531953E-4 0.0 0.02461930495525183 8.84525926535994E-5 42-43 0.0 7.371049387799951E-4 0.0 0.031636543972437384 8.84525926535994E-5 44-45 0.0 8.353855972839943E-4 0.0 0.03935157566500133 1.031946914291993E-4 46-47 0.0 9.041820582367939E-4 0.0 0.04807398410723128 1.1302275727959923E-4 48-49 0.0 9.041820582367939E-4 0.0 0.056452410244697215 1.2776485605519913E-4 50-51 0.0 0.0010565170789179929 0.0 0.06537138000393516 1.3267888898039912E-4 52-53 0.0 0.0011007433752447927 0.0 0.07345496416588909 1.5724905360639893E-4 54-55 0.0 0.0011007433752447927 0.0 0.08147957993274066 1.769051853071988E-4 56-57 0.0 0.0011105714410951926 0.0 0.088123352447611 1.8673325115759875E-4 58-59 0.0 0.0011253135398707923 0.0 0.09390225516764616 1.9656131700799867E-4 60-61 0.0 0.001164625803272392 0.0 0.09990720340224052 1.9656131700799867E-4 62-63 0.0 0.0012285082312999916 0.0 0.1054551465747913 2.063893828583986E-4 64-65 0.0 0.00144963971293399 0.0 0.11065419340965285 2.063893828583986E-4 66-67 0.0 0.00147420987755999 0.0 0.11637412773458561 2.063893828583986E-4 68-69 0.0 0.00149386600926079 0.0 0.12212354625706957 2.1130341578359856E-4 70-71 0.0 0.0014987800421859898 0.0 0.12773045782472275 2.1621744870879854E-4 72-73 0.0 0.00150369407511119 0.0 0.13209411906230029 2.358735804095984E-4 74-75 0.0 0.0015430063385127896 0.0 0.13602534540246028 2.358735804095984E-4 76-77 0.0 0.0015921466677647892 0.0 0.13922929486969066 2.358735804095984E-4 78-79 0.0 0.0016019747336151891 0.0 0.14211383219678303 2.358735804095984E-4 80-81 0.0 0.0016019747336151891 0.0 0.14330794219760662 2.4570164625999834E-4 82-83 0.0 0.0016068887665403892 0.0 0.14377968935842583 2.604437450355982E-4 84-85 0.0 0.001611802799465589 0.0 0.14414332779489064 2.702718108859982E-4 86-87 0.0 0.0016412869970167888 0.0 0.14425143651924505 2.800998767363981E-4 88-89 0.0 0.0017248255567451883 0.0 0.14430549088142222 3.0467004136239793E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12770 0.0 50.807587 1 GTATCAA 23165 0.0 36.775833 1 CTTATAC 9490 0.0 35.5496 1 TCAACGC 28570 0.0 29.295881 4 ATCAACG 28805 0.0 29.072767 3 CAACGCA 29360 0.0 28.507605 5 TATACAC 13780 0.0 28.243198 3 TATCAAC 29890 0.0 28.146196 2 AACGCAG 30325 0.0 27.71252 6 TTATACA 14525 0.0 24.659931 2 ACGCAGA 34705 0.0 24.16605 7 CGCAGAG 35190 0.0 23.832985 8 ACATCTC 16105 0.0 21.605968 8 TACACAT 17950 0.0 21.44442 5 ACACATC 16180 0.0 21.295748 6 GCAGAGT 40760 0.0 20.48261 9 GTACATG 28120 0.0 20.09633 1 GTGGTAT 6415 0.0 19.539156 1 GAGTACT 24885 0.0 19.53117 12-13 TACATGG 28520 0.0 19.21855 2 >>END_MODULE