##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139648_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8097779 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.57361098641986 34.0 31.0 34.0 31.0 34.0 2 32.71322457676358 34.0 31.0 34.0 31.0 34.0 3 32.783843569946775 34.0 31.0 34.0 31.0 34.0 4 36.26678265731876 37.0 37.0 37.0 35.0 37.0 5 36.198453921748175 37.0 37.0 37.0 35.0 37.0 6 36.22602950759708 37.0 37.0 37.0 35.0 37.0 7 36.17378728167316 37.0 37.0 37.0 35.0 37.0 8 36.15182533383536 37.0 37.0 37.0 35.0 37.0 9 37.870109693040526 39.0 38.0 39.0 35.0 39.0 10-11 37.81034756567202 39.0 38.0 39.0 35.0 39.0 12-13 37.77662943135395 39.0 38.0 39.0 35.0 39.0 14-15 39.14923314158116 40.0 39.0 41.0 36.0 41.0 16-17 39.114389575215625 40.0 38.0 41.0 36.0 41.0 18-19 39.003053862052795 40.0 38.5 41.0 35.5 41.0 20-21 39.06690352000996 40.0 39.0 41.0 36.0 41.0 22-23 38.982983963189355 40.0 38.0 41.0 35.0 41.0 24-25 38.87546191666726 40.0 38.0 41.0 35.0 41.0 26-27 38.823353735346814 40.0 38.0 41.0 35.0 41.0 28-29 38.70960262524541 40.0 38.0 41.0 35.0 41.0 30-31 38.64280435876468 40.0 38.0 41.0 35.0 41.0 32-33 38.514105168054364 40.0 38.0 41.0 34.0 41.0 34-35 38.28028096774615 40.0 38.0 41.0 34.0 41.0 36-37 38.54863665470765 40.0 38.0 41.0 34.0 41.0 38-39 38.64365341314044 40.0 38.0 41.0 35.0 41.0 40-41 38.6379132557567 40.0 38.0 41.0 35.0 41.0 42-43 38.56713907211825 40.0 38.0 41.0 34.0 41.0 44-45 38.49306781849438 40.0 38.0 41.0 34.0 41.0 46-47 38.42132346068428 40.0 38.0 41.0 34.0 41.0 48-49 38.354518155313755 40.0 38.0 41.0 34.0 41.0 50-51 38.27809179770622 40.0 38.0 41.0 33.5 41.0 52-53 38.179714795787106 40.0 37.5 41.0 33.0 41.0 54-55 38.0620913069509 40.0 37.0 41.0 33.0 41.0 56-57 37.91334299789712 40.0 37.0 41.0 33.0 41.0 58-59 37.74331207234415 39.5 36.0 41.0 33.0 41.0 60-61 37.575658641364335 39.0 36.0 41.0 33.0 41.0 62-63 37.360233090780554 39.0 35.5 41.0 32.0 41.0 64-65 37.07827288526981 38.5 35.0 40.0 32.0 41.0 66-67 36.75668109049482 38.0 35.0 40.0 31.5 41.0 68-69 36.441220968880245 37.5 35.0 40.0 31.0 41.0 70-71 36.10376397977477 37.0 35.0 39.5 31.0 41.0 72-73 35.787898887874036 36.5 34.5 39.0 31.0 41.0 74-75 35.4602170806922 36.0 34.0 39.0 31.0 40.0 76-77 34.5457920544909 35.0 33.5 37.0 29.5 39.0 78-79 34.78477109777029 35.0 34.0 37.0 30.0 39.0 80-81 34.586436276502056 35.0 34.0 37.0 30.0 39.0 82-83 34.33198183401747 35.0 34.0 36.5 30.0 38.5 84-85 34.071385293590836 35.0 34.0 36.0 30.0 37.0 86-87 33.86062656438714 35.0 34.0 36.0 30.0 37.0 88-89 33.651468785596876 35.0 33.5 35.0 29.5 36.5 90-91 33.46805590658434 35.0 33.0 35.0 29.0 36.0 92-93 33.33349496729296 35.0 33.0 35.0 29.0 36.0 94-95 33.276903408900665 35.0 33.0 35.0 29.0 36.0 96-97 33.270838420607475 35.0 33.0 35.0 29.0 35.5 98-99 33.35384175455299 35.0 33.0 35.0 30.0 35.0 100-101 31.781992735065856 33.5 30.0 34.5 25.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 7.0 20 38.0 21 203.0 22 1021.0 23 3411.0 24 8661.0 25 17899.0 26 32840.0 27 52112.0 28 75563.0 29 101596.0 30 132336.0 31 166026.0 32 210467.0 33 273486.0 34 375815.0 35 541883.0 36 892644.0 37 1713125.0 38 2273850.0 39 1161096.0 40 63698.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.6858592566998 21.509283163850625 15.537521527510387 24.267336051939186 2 13.555001141102514 21.6891972664914 41.74371578544901 23.01208580695707 3 16.896419710548706 26.677645512936888 31.303271794985793 25.122662981528617 4 11.834604505087693 18.76168993518963 39.23384908798438 30.1698564717383 5 12.799338287614207 38.13090455184126 35.91667985958617 13.153077300958364 6 29.486187445494306 38.682006347914204 18.716183624693095 13.115622581898393 7 25.991376893760236 33.051424724165074 23.392281191210724 17.564917190863962 8 23.98334160514877 37.47405307060121 21.074556369098243 17.468048955151776 9 25.070005681960623 17.180762049591007 21.634994356940002 36.114237911508376 10-11 23.80555354881414 27.228807421361978 29.11370567339759 19.851933356426297 12-13 24.627931930471306 24.7369741752646 29.32415172110773 21.31094217315637 14-15 21.710675317984332 26.21999064922671 27.00498263339609 25.064351399392866 16-17 21.22275918721387 29.363617862484716 27.71186804870868 21.701754901592736 18-19 21.29530025222978 28.46229365473849 29.51552741339442 20.72687867963731 20-21 22.038229208905786 27.570554342115116 29.46205183464352 20.929164614335573 22-23 21.743525127387958 27.498347170824545 29.329161933784814 21.428965768002683 24-25 21.543054107047947 27.661688192767958 29.37274070130176 21.422516998882337 26-27 21.529235827019814 27.774567116955666 29.30607086799076 21.390126188033765 28-29 21.49294359740818 27.820495548469626 29.310841468751953 21.37571938537024 30-31 21.730287779196477 27.678578913056857 29.263987633953548 21.32714567379312 32-33 21.467423334653944 27.886193858706765 29.164353111229524 21.482029695409768 34-35 21.667293746549994 27.913208820218742 29.11728321696779 21.302214216263472 36-37 21.596935770845928 27.777446817847355 29.13530005212775 21.490317359178963 38-39 21.468288532793725 27.90981521801537 29.17903859336814 21.44285765582276 40-41 21.73494927095373 27.78661915889906 29.03040641030762 21.448025159839588 42-43 21.650062154127568 27.899745293386424 28.79882309869685 21.651369453789158 44-45 21.732569873073636 28.01217335865503 28.57700834614797 21.67824842212336 46-47 21.825969291038952 27.967924037746812 28.343670578325508 21.862436092888725 48-49 21.765832079053794 28.09698906581715 28.292139835810925 21.845039019318126 50-51 21.755282992787432 28.190380568441313 28.1751597391904 21.879176699580853 52-53 21.90944687407127 28.130482817607383 28.079501068231977 21.880569240089372 54-55 21.90436004868071 28.09772780693666 28.080445750439292 21.917466393943332 56-57 21.910941571098817 28.21306157401534 28.006139373731965 21.86985748115388 58-59 21.84349271032888 28.26505059272901 28.047627918001456 21.84382877894065 60-61 21.94980502794325 28.268137496595617 28.004704030576338 21.777353444884792 62-63 21.928460037869446 28.320085269836916 27.95565230600714 21.795802386286503 64-65 21.865721976834294 28.239916550078203 27.963356071668855 21.931005401418645 66-67 21.928679195383904 28.26174651891301 27.843477882752047 21.96609640295103 68-69 21.905396738464642 28.193177150516323 27.942458330030483 21.95896778098855 70-71 21.889068260743578 28.02143682245989 27.98527027013246 22.104224646664075 72-73 21.979210332462998 28.06982051323958 27.87360142457429 22.077367729723132 74-75 21.817161468895048 28.225671831161513 27.87472591300094 22.082440786942495 76-77 21.952112443919248 28.12949920493682 27.833549831528416 22.08483851961552 78-79 21.916567395003582 28.10537046390093 27.800339173746476 22.177722967349016 80-81 21.92281154203764 28.10886369474553 27.839716529717695 22.128608233499133 82-83 21.989094678865122 28.049372144784822 27.90825701509289 22.053276161257163 84-85 22.02258356116338 28.031950561616302 27.885892788879456 22.059573088340866 86-87 21.925528410486155 28.01152351119709 27.992692991860473 22.07025508645628 88-89 21.9391255128948 27.99334672850457 27.969000949461094 22.09852680913954 90-91 21.955881069221647 28.022205282389333 27.975870985326733 22.046042663062284 92-93 22.03383243352212 27.908807318041056 28.022382782999234 22.03497746543759 94-95 21.846053372230024 27.91464826561012 28.109559955104547 22.12973840705531 96-97 21.842236694962516 27.930919059012727 28.160715771886586 22.06612847413817 98-99 21.952516710624266 28.518323891571363 28.170335956558056 21.358823441246322 100-101 20.316650098919403 32.1293762465518 26.15061839981398 21.40335525471482 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2242.0 1 1881.5 2 2091.0 3 2809.0 4 3688.0 5 5493.5 6 7097.5 7 8887.5 8 10494.0 9 10825.5 10 10090.5 11 9366.5 12 10586.5 13 14677.0 14 23977.5 15 36594.0 16 46492.0 17 51522.0 18 52267.5 19 49887.5 20 45908.0 21 42144.5 22 40807.0 23 43684.0 24 50891.5 25 62197.5 26 77384.5 27 94146.0 28 112116.5 29 132168.5 30 151808.0 31 171016.5 32 191322.0 33 211775.5 34 231116.5 35 248876.5 36 267901.0 37 283820.0 38 294806.0 39 304045.5 40 313346.5 41 321545.5 42 324612.5 43 328279.0 44 332909.0 45 335162.5 46 336381.0 47 334243.5 48 328250.0 49 321118.0 50 312931.0 51 300714.5 52 284375.5 53 267731.5 54 250112.5 55 231625.0 56 212196.5 57 191265.5 58 170332.0 59 146834.0 60 121801.0 61 98646.5 62 78087.5 63 60132.5 64 44360.0 65 32472.5 66 24606.5 67 18776.0 68 14077.0 69 10319.5 70 7391.0 71 5203.5 72 3597.5 73 2456.5 74 1675.5 75 1079.5 76 672.5 77 420.0 78 277.0 79 201.5 80 137.5 81 89.5 82 66.5 83 44.0 84 27.0 85 21.0 86 18.5 87 15.5 88 12.0 89 6.5 90 3.5 91 2.5 92 1.5 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.2349065095503347E-5 2 0.004285125588139662 3 0.0048037863221508026 4 1.2349065095503347E-5 5 1.2349065095503347E-5 6 1.2349065095503347E-5 7 1.2349065095503347E-5 8 0.0 9 0.002741492451201743 10-11 9.138308170672478E-4 12-13 0.0 14-15 6.545004500616774E-4 16-17 3.704719528651004E-5 18-19 4.939626038201339E-5 20-21 6.174745291756716E-6 22-23 6.731072948466226E-4 24-25 0.0040393586709002935 26-27 0.021247230337955766 28-29 0.3320945497954817 30-31 0.3250303779867612 32-33 0.33540874576009627 34-35 0.17795335598914389 36-37 0.03844185753405107 38-39 0.035417115745510486 40-41 0.01311423198608018 42-43 0.009966369401473288 44-45 0.009020588044542402 46-47 0.005889994024841603 48-49 0.009134134002670765 50-51 0.00948809727472958 52-53 0.0030927437018579036 54-55 0.003724326309442487 56-57 0.003567379716789462 58-59 0.00424525794742807 60-61 0.002554516603423343 62-63 0.0012367718689041383 64-65 4.0912189462374333E-4 66-67 0.006707416777779789 68-69 0.016110512931064296 70-71 0.013059045311682558 72-73 0.014162460499322424 74-75 0.007021847168306238 76-77 0.004413481071918013 78-79 0.0014751756827782211 80-81 0.0011928093145017215 82-83 5.063448515361841E-4 84-85 7.885205288954136E-5 86-87 0.0 88-89 4.2100937158764815E-4 90-91 0.004520615816368969 92-93 0.017147464180852598 94-95 0.001429337631328903 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 153.0 20-21 591.0 22-23 1209.0 24-25 2255.0 26-27 4192.0 28-29 6947.0 30-31 16358.0 32-33 22017.0 34-35 31886.0 36-37 45014.0 38-39 53848.0 40-41 56212.0 42-43 66776.0 44-45 79141.0 46-47 78682.0 48-49 70273.0 50-51 62121.0 52-53 60045.0 54-55 64699.0 56-57 67990.0 58-59 67864.0 60-61 67368.0 62-63 66215.0 64-65 72068.0 66-67 75523.0 68-69 74765.0 70-71 73262.0 72-73 70800.0 74-75 71498.0 76-77 73300.0 78-79 77519.0 80-81 79359.0 82-83 77397.0 84-85 78687.0 86-87 84056.0 88-89 90294.0 90-91 99085.0 92-93 103153.0 94-95 118680.0 96-97 182702.0 98-99 719268.0 100-101 4884507.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.16960226099017 #Duplication Level Percentage of deduplicated Percentage of total 1 89.90310667695483 76.57011837703614 2 7.019871232846134 11.957592816497439 3 1.7316542510164674 4.42452911437876 4 0.6153308854238949 2.096299470818242 5 0.28453831597678775 1.2117007599877478 6 0.14497811421055065 0.7408636994316603 7 0.08291582911983292 0.4943335731093478 8 0.04875051988714105 0.33216499110434355 9 0.040542141415601966 0.31076622532580733 >10 0.12613973627614475 1.6691677089275152 >50 0.0017508642705750077 0.09725465588041055 >100 3.740142775327654E-4 0.06296039938991561 >500 4.741832445256246E-5 0.03224820811272148 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.704719528651004E-5 0.0 0.0 1.2349065095503347E-5 3 0.0 3.704719528651004E-5 0.0 0.0 1.2349065095503347E-5 4 0.0 6.174532547751674E-5 0.0 0.0 2.4698130191006694E-5 5 0.0 6.174532547751674E-5 0.0 1.2349065095503347E-5 2.4698130191006694E-5 6 0.0 6.174532547751674E-5 0.0 1.2349065095503347E-5 2.4698130191006694E-5 7 0.0 6.174532547751674E-5 0.0 1.2349065095503347E-5 2.4698130191006694E-5 8 0.0 7.409439057302008E-5 0.0 1.2349065095503347E-5 2.4698130191006694E-5 9 4.939626038201339E-5 1.3583971605053683E-4 0.0 7.409439057302008E-5 2.4698130191006694E-5 10-11 7.409439057302008E-5 1.3583971605053683E-4 0.0 8.644345566852343E-5 2.4698130191006694E-5 12-13 8.026892312077176E-5 1.3583971605053683E-4 0.0 8.644345566852343E-5 2.4698130191006694E-5 14-15 8.644345566852343E-5 2.4698130191006695E-4 0.0 1.2349065095503347E-4 3.087266273875837E-5 16-17 9.261798821627511E-5 2.4698130191006695E-4 0.0 1.3583971605053683E-4 3.704719528651004E-5 18-19 1.1114158585953012E-4 2.593303670055703E-4 0.0 1.4818878114604016E-4 3.704719528651004E-5 20-21 1.4201424859828848E-4 2.84028497196577E-4 0.0 2.0375957407580523E-4 3.704719528651004E-5 22-23 1.605378462415435E-4 2.963775622920803E-4 0.0 2.8402849719657696E-4 4.939626038201339E-5 24-25 1.7288691133704687E-4 3.0872662738758367E-4 0.0 3.272502250308387E-4 4.939626038201339E-5 26-27 1.9758504152805355E-4 3.21075692483087E-4 0.0 3.951700830561071E-4 4.939626038201339E-5 28-29 2.099341066235569E-4 3.21075692483087E-4 0.0 9.014817519717444E-4 4.939626038201339E-5 30-31 2.346322368145636E-4 3.4577382267409374E-4 0.0 0.002136388261522079 4.939626038201339E-5 32-33 2.4698130191006695E-4 3.4577382267409374E-4 0.0 0.00450123422731097 5.557079292976506E-5 34-35 2.4698130191006695E-4 4.013446156038588E-4 0.0 0.007588500501186807 6.174532547751674E-5 36-37 2.4698130191006695E-4 4.569154085336238E-4 0.0 0.012416984953528616 6.174532547751674E-5 38-39 2.902030297443287E-4 4.692644736291272E-4 0.0 0.01962883896930257 6.79198580252684E-5 40-41 2.963775622920803E-4 5.063116689156372E-4 0.0 0.02727908479596689 8.026892312077176E-5 42-43 2.963775622920803E-4 5.124862014633889E-4 0.0 0.03413281592397125 9.261798821627511E-5 44-45 2.963775622920803E-4 5.927551245841606E-4 0.0 0.04288212854413537 9.879252076402678E-5 46-47 3.0872662738758367E-4 6.791985802526841E-4 0.0 0.05244030492805496 1.0496705331177845E-4 48-49 3.1490115993533535E-4 6.791985802526841E-4 0.0 0.061418075252485896 1.2349065095503347E-4 50-51 3.21075692483087E-4 7.162457755391942E-4 0.0 0.07032792571889157 1.2349065095503347E-4 52-53 3.272502250308387E-4 7.285948406346975E-4 0.0 0.07922542712020172 1.2349065095503347E-4 54-55 3.4577382267409374E-4 7.285948406346975E-4 0.0 0.08802413600074785 1.2349065095503347E-4 56-57 3.7047195286510045E-4 7.409439057302008E-4 0.0 0.09447034798060061 1.2349065095503347E-4 58-59 3.8282101796060375E-4 7.471184382779525E-4 0.0 0.10070662585382979 1.2349065095503347E-4 60-61 3.8282101796060375E-4 7.532929708257041E-4 0.0 0.10664652616476691 1.2349065095503347E-4 62-63 3.889955505083554E-4 7.656420359212075E-4 0.0 0.11207394027424063 1.2349065095503347E-4 64-65 4.013446156038588E-4 9.014817519717444E-4 0.0 0.11750135438371434 1.2349065095503347E-4 66-67 4.1369368069936214E-4 9.014817519717444E-4 0.0 0.12299051381866558 1.2349065095503347E-4 68-69 4.3221727834261717E-4 9.385289472582544E-4 0.0 0.12876987628336115 1.2349065095503347E-4 70-71 4.3221727834261717E-4 9.632270774492611E-4 0.0 0.13420346492538263 1.2349065095503347E-4 72-73 4.6308994108137556E-4 9.632270774492611E-4 0.0 0.13879731714090987 1.4818878114604016E-4 74-75 4.8161353872463054E-4 9.879252076402678E-4 0.0 0.14264405091815915 1.4818878114604016E-4 76-77 4.8161353872463054E-4 0.001037321468022281 0.0 0.14595360036375404 1.4818878114604016E-4 78-79 4.877880712723822E-4 0.001055845065665536 0.0 0.1490408666376299 1.4818878114604016E-4 80-81 4.939626038201339E-4 0.001062019598213288 0.0 0.15028812221227572 1.605378462415435E-4 82-83 4.939626038201339E-4 0.001062019598213288 0.0 0.15075121215335713 1.9758504152805355E-4 84-85 5.063116689156372E-4 0.001062019598213288 0.0 0.15106611331329245 1.9758504152805355E-4 86-87 5.063116689156372E-4 0.0010743686633087912 0.0 0.15117108036660423 2.0375957407580523E-4 88-89 5.063116689156372E-4 0.0011978593142638247 0.0 0.151226651159534 2.099341066235569E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11740 0.0 45.87535 1 GTATCAA 20315 0.0 34.679844 1 TCAACGC 24835 0.0 27.85247 4 ATCAACG 25030 0.0 27.637869 3 CAACGCA 25460 0.0 27.16874 5 TATCAAC 26265 0.0 26.516552 2 AACGCAG 26195 0.0 26.487417 6 ACGCAGA 30400 0.0 22.781736 7 CGCAGAG 31025 0.0 22.363832 8 GTACATG 23275 0.0 19.821007 1 GCAGAGT 35290 0.0 19.396723 9 TACATGG 23530 0.0 19.101168 2 GAGTACT 20925 0.0 18.748808 12-13 AGAGTAC 31145 0.0 18.714373 10-11 ACATGGG 23765 0.0 18.42976 3 CAGAGTA 33915 0.0 17.761452 10-11 AGTACTT 22810 0.0 17.125006 12-13 GTACTTT 23340 0.0 16.900187 14-15 CATGGGG 16555 0.0 16.20049 4 TATACCG 565 0.0 15.772884 5 >>END_MODULE