##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139647_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8633654 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.56155840852552 34.0 31.0 34.0 31.0 34.0 2 32.70437684901433 34.0 31.0 34.0 31.0 34.0 3 32.77262987374755 34.0 31.0 34.0 31.0 34.0 4 36.26399783915362 37.0 37.0 37.0 35.0 37.0 5 36.19261218946231 37.0 35.0 37.0 35.0 37.0 6 36.22146544209439 37.0 37.0 37.0 35.0 37.0 7 36.169582542918675 37.0 37.0 37.0 35.0 37.0 8 36.14581867654182 37.0 36.0 37.0 35.0 37.0 9 37.86225160285552 39.0 38.0 39.0 35.0 39.0 10-11 37.796571648574286 39.0 38.0 39.0 35.0 39.0 12-13 37.76432313595147 39.0 38.0 39.0 35.0 39.0 14-15 39.12929844072973 40.0 38.5 41.0 36.0 41.0 16-17 39.09094278042646 40.0 38.0 41.0 36.0 41.0 18-19 38.978665232588654 40.0 38.5 41.0 35.0 41.0 20-21 39.03781491733034 40.0 39.0 41.0 36.0 41.0 22-23 38.949153431140964 40.0 38.0 41.0 35.0 41.0 24-25 38.83794530143907 40.0 38.0 41.0 35.0 41.0 26-27 38.784075611106886 40.0 38.0 41.0 35.0 41.0 28-29 38.6758294620845 40.0 38.0 41.0 35.0 41.0 30-31 38.606800083525755 40.0 38.0 41.0 35.0 41.0 32-33 38.473079345803455 40.0 38.0 41.0 34.0 41.0 34-35 38.24055353348356 40.0 38.0 41.0 34.0 41.0 36-37 38.50902827057381 40.0 38.0 41.0 34.0 41.0 38-39 38.601990551445795 40.0 38.0 41.0 34.5 41.0 40-41 38.59699958442944 40.0 38.0 41.0 34.0 41.0 42-43 38.52647583820905 40.0 38.0 41.0 34.0 41.0 44-45 38.44776578490119 40.0 38.0 41.0 34.0 41.0 46-47 38.37254596357858 40.0 38.0 41.0 34.0 41.0 48-49 38.30125612628419 40.0 38.0 41.0 33.5 41.0 50-51 38.21755989470188 40.0 38.0 41.0 33.0 41.0 52-53 38.119365510134216 40.0 37.0 41.0 33.0 41.0 54-55 37.99082167936163 40.0 37.0 41.0 33.0 41.0 56-57 37.839409621585745 40.0 37.0 41.0 33.0 41.0 58-59 37.66693135338512 39.5 36.0 41.0 33.0 41.0 60-61 37.493194407546895 39.0 36.0 41.0 32.5 41.0 62-63 37.26977616042093 39.0 35.5 40.5 32.0 41.0 64-65 36.97798634562579 38.5 35.0 40.0 32.0 41.0 66-67 36.648412450343926 38.0 35.0 40.0 31.0 41.0 68-69 36.32691960297049 37.0 35.0 40.0 31.0 41.0 70-71 35.98051277678547 37.0 35.0 39.0 31.0 41.0 72-73 35.657168506264796 36.0 34.0 39.0 31.0 40.5 74-75 35.32579283854373 36.0 34.0 39.0 30.0 40.0 76-77 34.409566027149 35.0 33.5 37.0 29.5 39.0 78-79 34.66205380889884 35.0 34.0 37.0 30.0 39.0 80-81 34.47033363974015 35.0 34.0 37.0 30.0 39.0 82-83 34.222585862832915 35.0 34.0 36.0 30.0 38.5 84-85 33.963963898594116 35.0 34.0 36.0 30.0 37.0 86-87 33.75778620631192 35.0 33.5 35.5 30.0 37.0 88-89 33.55733931423879 35.0 33.0 35.0 29.0 36.5 90-91 33.3783850830958 35.0 33.0 35.0 29.0 36.0 92-93 33.2451953019892 35.0 33.0 35.0 29.0 36.0 94-95 33.19413185038303 35.0 33.0 35.0 29.0 36.0 96-97 33.19123766024516 35.0 33.0 35.0 29.0 35.0 98-99 33.28309240935502 34.0 33.0 35.0 29.5 35.0 100-101 31.68911544118866 33.0 30.0 34.5 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 3.0 19 5.0 20 36.0 21 227.0 22 1101.0 23 3745.0 24 9675.0 25 20564.0 26 36205.0 27 57519.0 28 83005.0 29 111423.0 30 144003.0 31 182099.0 32 230955.0 33 298155.0 34 412592.0 35 595391.0 36 991474.0 37 1893402.0 38 2400418.0 39 1103762.0 40 57894.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 38.5039930967783 21.44544891210554 15.83207565745658 24.218482333659576 2 13.644452804819654 21.579733307634445 41.390436446335 23.3853774412109 3 17.01784896431435 26.32755248390577 31.313480095139496 25.341118456640388 4 11.993004117609587 18.79785490493592 38.77819925523967 30.430941722214822 5 12.952366612035465 37.926809634395646 35.73654248203251 13.384281271536372 6 29.710192097201066 38.400132041488824 18.505209268385908 13.384466592924198 7 26.2197332530274 32.946459492798525 22.976840617815178 17.856966636358898 8 24.337864361949183 37.00101949881244 20.82150848296677 17.839607656271607 9 25.09161215265306 17.200011536581098 21.491492292671943 36.2168840180939 10-11 23.954912033756614 27.150474007413507 28.734182016877728 20.160431941952154 12-13 24.82280387886751 24.637407290123043 28.9856994500822 21.55408938092724 14-15 21.94726176901021 26.087523317370476 26.768312352284713 25.1969025613346 16-17 21.361267065860634 29.312628295283076 27.456703554320466 21.869401084535824 18-19 21.434013175074302 28.349302725503804 29.282065647426236 20.93461845199566 20-21 22.197152046289485 27.35875178516171 29.282327780796763 21.161768387752037 22-23 21.918750033304672 27.310956299402417 29.136950209338703 21.63334345795421 24-25 21.765055909481152 27.48056917484988 29.190126069711408 21.56424884595756 26-27 21.690505790854086 27.578194846844706 29.187228495750528 21.544070866550676 28-29 21.558763261372903 27.630947348062882 29.189263758668933 21.62102563189528 30-31 21.79245963212871 27.50843861976457 29.14607073473038 21.553031013376344 32-33 21.6189080912957 27.696087013561204 29.040360536509553 21.644644358633546 34-35 21.791399875602345 27.70540073491135 29.025925214876914 21.47727417460939 36-37 21.805402111404533 27.567635923467996 29.004675622741804 21.622286342385664 38-39 21.596400583218113 27.707141359727327 29.087514515676933 21.608943541377627 40-41 21.826035437344196 27.638188037663163 28.93069433377333 21.605082191219303 42-43 21.793439147229403 27.72103780536474 28.66165149161144 21.82387155579442 44-45 21.872450678694502 27.79763414564038 28.494146460617465 21.835768715047653 46-47 22.007045481840986 27.80793441865667 28.183311735916234 22.00170836358611 48-49 21.921470089591523 27.878332087465957 28.153119541797007 22.047078281145517 50-51 21.858551698576683 27.99969375084889 28.097822009921337 22.043932540653092 52-53 22.064644347648702 27.97566553955022 27.943164895419947 22.016525217381126 54-55 22.014991978662955 27.880747574312302 27.97105896074732 22.133201486277425 56-57 22.058083902202107 28.02452947182396 27.83416488462048 22.083221741353455 58-59 21.986362592074443 28.070052797661184 27.938859111796617 22.00472549846776 60-61 22.140647429618767 28.115756327066528 27.82055713082054 21.923039112494163 62-63 22.075356137133255 28.201087448167232 27.814920438836587 21.90863597586292 64-65 22.02687253319847 28.131815305989292 27.783921854071615 22.05739030674062 66-67 22.11185590483311 28.074692283773327 27.66618951137455 22.147262300019005 68-69 22.045075555800263 28.047342884642063 27.761187168356717 22.146394391200957 70-71 22.066700545734683 27.830187437552485 27.838800073517895 22.264311943194944 72-73 22.117959131113338 27.863481702366048 27.78209404797134 22.236465118549276 74-75 21.97227723971803 28.02005782670945 27.746529492234462 22.261135441338066 76-77 22.07271407322726 27.931743286666656 27.73890162585853 22.256641014247556 78-79 22.071572243026775 27.87518185876296 27.67791443362017 22.37533146459009 80-81 22.04804422469988 27.93170071942773 27.691569176028025 22.328685879844365 82-83 22.114936212875953 27.88965956706171 27.76187674679195 22.2335274732704 84-85 22.148553804840148 27.859512407814325 27.75169366816496 22.240240119180566 86-87 22.071390956012145 27.860275686223 27.844519199157947 22.223814158606906 88-89 22.073444021905598 27.82295014266378 27.813058747199896 22.290547088230724 90-91 22.093358107609 27.839603611589357 27.82680735727801 22.24023092352363 92-93 22.17108875572864 27.746971742423483 27.873539008670644 22.208400493177226 94-95 21.977880092859678 27.697798553326308 27.98038667386954 22.343934679944475 96-97 21.95516221333058 27.76563743174461 28.03512479748578 22.24407555743903 98-99 22.093741698155206 28.350192056149815 28.016899299141034 21.53916694655394 100-101 20.476330871196723 31.947970916684703 25.964352075413665 21.611346136704903 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2234.0 1 1869.0 2 2106.5 3 2860.5 4 3824.0 5 5643.0 6 7190.0 7 9092.5 8 10899.5 9 11353.5 10 10681.5 11 10228.0 12 11645.5 13 15841.0 14 25983.0 15 39753.0 16 50343.0 17 55842.5 18 56511.5 19 53294.0 20 48217.0 21 43048.5 22 40196.5 23 42009.0 24 49044.5 25 60691.5 26 75153.0 27 91566.5 28 109982.0 29 129101.0 30 148077.5 31 167179.0 32 187850.0 33 209706.5 34 230320.5 35 249430.5 36 270608.5 37 288167.5 38 301063.5 39 314280.0 40 326218.0 41 336663.5 42 342194.0 43 347771.0 44 354342.5 45 359459.5 46 364494.5 47 368749.0 48 366872.5 49 356649.5 50 345231.5 51 330945.0 52 313407.5 53 294084.0 54 272957.5 55 252472.5 56 230938.5 57 207037.0 58 182542.5 59 157270.0 60 131442.0 61 107126.5 62 84752.0 63 64772.0 64 47931.0 65 35483.0 66 26744.0 67 20458.0 68 15585.5 69 11127.0 70 7772.0 71 5440.0 72 3744.5 73 2521.5 74 1609.0 75 1036.0 76 708.5 77 460.5 78 292.5 79 195.0 80 141.5 81 102.5 82 77.0 83 54.5 84 38.0 85 30.5 86 26.0 87 21.0 88 12.5 89 5.5 90 3.0 91 2.5 92 3.0 93 2.5 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 4.633032549138522E-5 2 0.003891747341276359 3 0.005050005478560989 4 4.633032549138522E-5 5 4.633032549138522E-5 6 4.633032549138522E-5 7 4.633032549138522E-5 8 0.0 9 0.0028608975990930376 10-11 0.0010018932887512055 12-13 0.0 14-15 7.991981147263951E-4 16-17 7.528677892350099E-5 18-19 2.8956453432115767E-5 20-21 5.791513394264687E-6 22-23 6.255447452156253E-4 24-25 0.004385455720105733 26-27 0.021992570973271813 28-29 0.3363535411816213 30-31 0.32887104673405304 32-33 0.3401277655773439 34-35 0.17971185800249645 36-37 0.03792899046587667 38-39 0.03480195380711712 40-41 0.012757635835950309 42-43 0.010160994518071901 44-45 0.008953205521163448 46-47 0.005858950354168995 48-49 0.008836838561561235 50-51 0.009119905627513148 52-53 0.002882084761926104 54-55 0.003436970538765202 56-57 0.0035982178134673767 58-59 0.00415205130787384 60-61 0.0028500646604398866 62-63 0.0014341453126647686 64-65 4.5832103778025427E-4 66-67 0.006546514106878258 68-69 0.01595401822125257 70-71 0.012836309451701293 72-73 0.013884214241400477 74-75 0.007055233599816964 76-77 0.004401536073508573 78-79 0.0013776057394991124 80-81 0.0011588402412179282 82-83 4.962554648335037E-4 84-85 8.73202231235448E-5 86-87 0.0 88-89 3.8072396079528607E-4 90-91 0.004303114083357532 92-93 0.017293636711665027 94-95 0.0015365056897354442 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 188.0 20-21 726.0 22-23 1281.0 24-25 2658.0 26-27 4845.0 28-29 6878.0 30-31 15571.0 32-33 21074.0 34-35 30693.0 36-37 43133.0 38-39 51402.0 40-41 54811.0 42-43 65852.0 44-45 79036.0 46-47 78542.0 48-49 69157.0 50-51 60855.0 52-53 59053.0 54-55 64124.0 56-57 67527.0 58-59 67545.0 60-61 67230.0 62-63 67252.0 64-65 72862.0 66-67 78181.0 68-69 75809.0 70-71 74010.0 72-73 71305.0 74-75 73020.0 76-77 75097.0 78-79 80786.0 80-81 81081.0 82-83 80533.0 84-85 82433.0 86-87 88130.0 88-89 95492.0 90-91 105019.0 92-93 110761.0 94-95 130277.0 96-97 200229.0 98-99 794915.0 100-101 5284281.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.76619256302422 #Duplication Level Percentage of deduplicated Percentage of total 1 90.64325412519614 78.64770041965907 2 6.73624080863988 11.689559343066996 3 1.5086003263604824 3.9268651925290436 4 0.5450162071268184 1.8915592471013847 5 0.22361735177701525 0.9701213102359015 6 0.11335501365860713 0.5901229765852168 7 0.07075171119031991 0.4297199618111941 8 0.04188801304465232 0.2907570724731819 9 0.025950307486717297 0.20264484388159815 >10 0.0894045461454324 1.1893815851739482 >50 0.001555778289368422 0.08724751765215376 >100 3.2520724146256776E-4 0.057034597227282 >500 4.0603843079754505E-5 0.02728593260302625 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.1582581372846307E-5 1.1582581372846307E-5 2 0.0 1.1582581372846307E-5 0.0 1.1582581372846307E-5 1.1582581372846307E-5 3 0.0 1.1582581372846307E-5 0.0 1.1582581372846307E-5 1.1582581372846307E-5 4 0.0 5.7912906864231527E-5 0.0 1.1582581372846307E-5 3.474774411853892E-5 5 0.0 5.7912906864231527E-5 0.0 1.1582581372846307E-5 3.474774411853892E-5 6 2.3165162745692613E-5 5.7912906864231527E-5 0.0 1.1582581372846307E-5 3.474774411853892E-5 7 2.3165162745692613E-5 5.7912906864231527E-5 0.0 1.1582581372846307E-5 3.474774411853892E-5 8 2.3165162745692613E-5 5.7912906864231527E-5 0.0 3.474774411853892E-5 3.474774411853892E-5 9 2.3165162745692613E-5 9.266065098277045E-5 0.0 8.107806960992415E-5 4.633032549138523E-5 10-11 2.8956453432115767E-5 9.266065098277045E-5 0.0 1.100345230420399E-4 5.7912906864231527E-5 12-13 3.474774411853892E-5 9.84519416691936E-5 0.0 1.2740839510130936E-4 5.7912906864231527E-5 14-15 4.053903480496207E-5 1.737387205926946E-4 0.0 1.2740839510130936E-4 6.370419755065468E-5 16-17 7.528677892350099E-5 1.7953001127911773E-4 0.0 1.3899097647415568E-4 6.949548823707784E-5 18-19 8.107806960992415E-5 2.316516274569261E-4 0.0 1.737387205926946E-4 6.949548823707784E-5 20-21 8.107806960992415E-5 2.7798195294831136E-4 0.0 2.4323420882977243E-4 6.949548823707784E-5 22-23 9.266065098277045E-5 3.185209877532734E-4 0.0 2.7798195294831136E-4 8.107806960992415E-5 24-25 9.84519416691936E-5 3.6485131324465864E-4 0.0 3.0114711569400395E-4 9.266065098277045E-5 26-27 1.0424323235561675E-4 3.938077666767744E-4 0.0 3.995990573631976E-4 9.266065098277045E-5 28-29 1.0424323235561675E-4 3.938077666767744E-4 0.0 7.007461730572015E-4 9.84519416691936E-5 30-31 1.0424323235561675E-4 4.16972929422467E-4 0.0 0.001407283636800826 1.1582581372846305E-4 32-33 1.1582581372846305E-4 4.16972929422467E-4 0.0 0.002762445657423844 1.5057355784700197E-4 34-35 1.2161710441488621E-4 4.92259708345968E-4 0.0 0.004661989002570638 1.621561392198483E-4 36-37 1.2740839510130936E-4 5.675464872694691E-4 0.0 0.007459182404113021 1.621561392198483E-4 38-39 1.2740839510130936E-4 5.791290686423153E-4 0.0 0.011524668465982074 1.6794742990627144E-4 40-41 1.2740839510130936E-4 6.486245568793932E-4 0.0 0.01634881360777256 1.737387205926946E-4 42-43 1.2740839510130936E-4 6.717897196250858E-4 0.0 0.020790733564259117 1.737387205926946E-4 44-45 1.2740839510130936E-4 7.991981147263951E-4 0.0 0.02619400777469192 1.737387205926946E-4 46-47 1.2740839510130936E-4 9.150239284548582E-4 0.0 0.032616549145935196 2.0269517402481035E-4 48-49 1.2740839510130936E-4 9.266065098277045E-4 0.0 0.03859895242501031 2.200690460840798E-4 50-51 1.331996857877325E-4 0.0011061365211068224 0.0 0.044645059901636086 2.200690460840798E-4 52-53 1.3899097647415568E-4 0.0011177191024796685 0.0 0.05061588059933836 2.2586033677050296E-4 54-55 1.3899097647415568E-4 0.0011466755559117843 0.0 0.05679518776175187 2.316516274569261E-4 56-57 1.3899097647415568E-4 0.001169840718657477 0.0 0.06308452944720741 2.316516274569261E-4 58-59 1.3899097647415568E-4 0.001181423300030323 0.0 0.06825036073949686 2.3744291814334925E-4 60-61 1.4478226716057883E-4 0.0012219623348352854 0.0 0.07371733914748031 2.4323420882977243E-4 62-63 1.5057355784700197E-4 0.0012393362068945548 0.0 0.07915536110203165 2.548167902026187E-4 64-65 1.5057355784700197E-4 0.0013319968578773252 0.0 0.0846455046727608 2.548167902026187E-4 66-67 1.5057355784700197E-4 0.0013319968578773252 0.0 0.09050629084742104 2.548167902026187E-4 68-69 1.5057355784700197E-4 0.0013551620206230176 0.0 0.09656398090541965 2.548167902026187E-4 70-71 1.5057355784700197E-4 0.0013899097647415567 0.0 0.10201937673203026 2.7798195294831136E-4 72-73 1.5057355784700197E-4 0.001401492346114403 0.0 0.10621227118900062 2.7798195294831136E-4 74-75 1.5057355784700197E-4 0.0014304487995465188 0.0 0.10976812367046444 2.7798195294831136E-4 76-77 1.5636484853342515E-4 0.0014883617064107503 0.0 0.11304599419897995 2.7798195294831136E-4 78-79 1.621561392198483E-4 0.0015404833225885588 0.0 0.11572736178679387 2.7798195294831136E-4 80-81 1.621561392198483E-4 0.0015404833225885588 0.0 0.11692615895888346 2.8956453432115765E-4 82-83 1.621561392198483E-4 0.0015462746132749818 0.0 0.11731996672556023 3.4168615049896605E-4 84-85 1.6794742990627144E-4 0.0015694397760206745 0.0 0.1176384877133135 3.474774411853892E-4 86-87 1.737387205926946E-4 0.0015752310667070976 0.0 0.11775431352704196 3.474774411853892E-4 88-89 1.737387205926946E-4 0.001627352682884906 0.0 0.11781801772459262 3.474774411853892E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 16125 0.0 36.921482 1 GTATCAA 25795 0.0 30.795942 1 TCAACGC 31030 0.0 25.144627 4 ATCAACG 31095 0.0 25.079782 3 CAACGCA 31535 0.0 24.769045 5 TATCAAC 32020 0.0 24.555487 2 AACGCAG 32390 0.0 24.194326 6 ACGCAGA 36845 0.0 21.268944 7 CGCAGAG 37595 0.0 20.799202 8 GTACATG 25845 0.0 19.466364 1 GAGTACT 22180 0.0 19.26322 12-13 TACATGG 25800 0.0 19.003704 2 AGAGTAC 34320 0.0 18.73303 10-11 GCAGAGT 42180 0.0 18.487686 9 ACATGGG 25925 0.0 18.335382 3 GTACTTT 24355 0.0 17.570152 14-15 AGTACTT 24050 0.0 17.214962 12-13 CAGAGTA 40470 0.0 16.719898 10-11 CATGGGG 18040 0.0 16.097586 4 CTTATAC 5290 0.0 15.824007 1 >>END_MODULE