##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139639_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8597007 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.48449501087995 34.0 31.0 34.0 31.0 34.0 2 32.612208760560506 34.0 31.0 34.0 31.0 34.0 3 32.668601526089255 34.0 31.0 34.0 31.0 34.0 4 36.19811743784785 37.0 35.0 37.0 35.0 37.0 5 36.11484729511096 37.0 35.0 37.0 35.0 37.0 6 36.1524408436564 37.0 36.0 37.0 35.0 37.0 7 36.1060348095564 37.0 36.0 37.0 35.0 37.0 8 36.080068912355195 37.0 36.0 37.0 35.0 37.0 9 37.79527561161693 39.0 38.0 39.0 35.0 39.0 10-11 37.72255594301598 39.0 37.5 39.0 35.0 39.0 12-13 37.67011408737948 39.0 37.0 39.0 35.0 39.0 14-15 39.01000557519611 40.0 38.0 41.0 36.0 41.0 16-17 38.978397656300615 40.0 38.0 41.0 35.5 41.0 18-19 38.97579436657432 40.0 38.0 41.0 35.0 41.0 20-21 38.945280510702425 40.0 38.0 41.0 35.0 41.0 22-23 38.84113057870548 40.0 38.0 41.0 35.0 41.0 24-25 38.71594237101103 40.0 38.0 41.0 34.0 41.0 26-27 38.64962839740888 40.0 38.0 41.0 34.5 41.0 28-29 38.593664436862866 40.0 38.0 41.0 34.0 41.0 30-31 38.52475138987432 40.0 38.0 41.0 34.0 41.0 32-33 38.41737138454534 40.0 38.0 41.0 34.0 41.0 34-35 38.30744126528667 40.0 38.0 41.0 34.0 41.0 36-37 38.44600715167425 40.0 38.0 41.0 34.0 41.0 38-39 38.514092533042955 40.0 38.0 41.0 34.0 41.0 40-41 38.44436293691588 40.0 38.0 41.0 34.0 41.0 42-43 38.40434688586129 40.0 38.0 41.0 34.0 41.0 44-45 38.368191999538965 40.0 38.0 41.0 34.0 41.0 46-47 38.27574371699016 40.0 38.0 41.0 33.0 41.0 48-49 38.19548707589516 40.0 38.0 41.0 33.0 41.0 50-51 38.12318475213466 40.0 37.5 41.0 33.0 41.0 52-53 38.046234763207124 40.0 37.0 41.0 33.0 41.0 54-55 37.916951652723 40.0 37.0 41.0 33.0 41.0 56-57 37.75369950016187 40.0 36.5 41.0 33.0 41.0 58-59 37.620790539632765 39.0 36.0 41.0 33.0 41.0 60-61 37.464433391017224 39.0 36.0 41.0 32.5 41.0 62-63 37.23348611323097 39.0 35.0 40.5 32.0 41.0 64-65 36.89760754087178 38.5 35.0 40.0 31.5 41.0 66-67 36.58891776132998 38.0 35.0 40.0 31.0 41.0 68-69 36.299770738396106 37.0 35.0 40.0 31.0 41.0 70-71 35.9820827539042 37.0 35.0 39.0 31.0 41.0 72-73 35.662999003031075 36.0 34.0 39.0 31.0 40.5 74-75 35.33233214440026 36.0 34.0 39.0 30.0 40.0 76-77 34.3564680199858 35.0 33.5 37.0 29.5 39.0 78-79 34.67562580806959 35.0 34.0 37.0 30.0 39.0 80-81 34.52632138570033 35.0 34.0 37.0 30.0 39.0 82-83 34.29367853077287 35.0 34.0 36.0 30.0 38.5 84-85 34.039449801976474 35.0 34.0 36.0 30.0 37.0 86-87 33.823560181733 35.0 34.0 35.5 30.0 37.0 88-89 33.62714398485829 35.0 33.0 35.0 30.0 36.5 90-91 33.467034682909244 35.0 33.0 35.0 29.0 36.0 92-93 33.34810886354451 35.0 33.0 35.0 29.0 36.0 94-95 33.295113793026324 35.0 33.0 35.0 29.0 36.0 96-97 33.31545312185402 35.0 33.0 35.0 29.5 35.0 98-99 33.36358090126323 35.0 33.0 35.0 30.0 35.0 100-101 31.890117344518607 33.5 30.5 34.5 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 6.0 19 7.0 20 40.0 21 268.0 22 1276.0 23 4270.0 24 10992.0 25 22615.0 26 39877.0 27 62572.0 28 89015.0 29 118700.0 30 150807.0 31 187940.0 32 234696.0 33 303094.0 34 414683.0 35 590458.0 36 972631.0 37 1853183.0 38 2397687.0 39 1087487.0 40 54703.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.704637405161755 21.61526931585252 15.68525135378526 23.994841925200472 2 13.8565913118587 21.96857687754099 41.110266441049006 23.064565369551296 3 16.948225928887336 26.80990335472605 31.511796083427186 24.73007463295943 4 12.088080431722393 19.078327966736328 39.1628085405547 29.670783060986583 5 12.859697899478029 38.11166352565068 35.89582233628777 13.132816238583525 6 29.10834306734228 38.86490250210364 18.864962988277547 13.161791442276533 7 25.763713553299834 33.17065266675399 23.490631505898683 17.5750022740475 8 24.22515184645075 36.783010645449046 21.35720024422453 17.63463726387567 9 25.19374475326122 16.982549857177037 21.637704843092486 36.18600054646925 10-11 23.69581910570536 27.195305233182854 29.26171776786874 19.847157893243047 12-13 24.63275814236718 24.785878091464845 29.276171344055474 21.305192422112505 14-15 21.851198286565978 26.161792750021245 26.987766494713362 24.999242468699418 16-17 21.296216380446868 29.33213609482185 27.650696067910154 21.72095145682113 18-19 21.35639430750659 28.389534682190522 29.4745752183958 20.77949579190709 20-21 22.150820462366074 27.483732783295245 29.422927626734698 20.94251912760398 22-23 21.89885771750456 27.39007094921248 29.26058667333017 21.450484659952792 24-25 21.677871970662476 27.577556887851056 29.306605451796635 21.437965689689833 26-27 21.661741070622977 27.704449102594626 29.220931173405624 21.412878653376772 28-29 21.585512005191205 27.703766633085507 29.279248099808182 21.431473261915105 30-31 21.786669756284567 27.603284644182057 29.209322820682402 21.400722778850973 32-33 21.66781106963049 27.77628196652425 29.051675444586788 21.504231519258468 34-35 21.830563063778584 27.699118094289314 29.0959250209577 21.374393820974394 36-37 21.719356516420795 27.683884632731203 29.060832020184257 21.535926830663744 38-39 21.591788544928583 27.791094130073486 29.110091677066052 21.507025647931883 40-41 21.841877960649512 27.68075836283578 28.955331657399046 21.522032019115663 42-43 21.779614069593414 27.746913983617194 28.747256587546705 21.726215359242687 44-45 21.834579994873916 27.873322220804326 28.544421871660514 21.747675912661247 46-47 21.954219338863744 27.846294925551074 28.243864751019487 21.955620984565698 48-49 21.888408944072648 27.975903167629667 28.19695481164619 21.93873307665149 50-51 21.90322553194743 28.051944752524555 28.076480851298413 21.9683488642296 52-53 22.036193313612927 27.99983411118549 27.976980940294055 21.986991634907525 54-55 22.012742350654854 27.94131885560742 27.98728577705068 22.058653016687042 56-57 22.034194276554103 28.05068341386591 27.920575615389232 21.994546694190753 58-59 21.927983615751835 28.071264295010906 28.03719496990025 21.96355711933701 60-61 22.064548123145343 28.089327563728272 27.93503275397327 21.911091559153114 62-63 22.02227524110113 28.191186679501307 27.89534907727365 21.89118900212391 64-65 22.00055793219861 28.07284152421453 27.91007007737762 22.01653046620924 66-67 22.053118872249364 28.15033756692049 27.699647998603353 22.09689556222679 68-69 21.995145106931556 28.086126143020135 27.822125727599804 22.0966030224485 70-71 21.99994646993002 27.89457983892547 27.904353436915585 22.201120254228925 72-73 22.048078040346095 27.926328352262892 27.797875883030272 22.227717724360744 74-75 21.94052550983257 28.004725898438075 27.78573837509465 22.2690102166347 76-77 22.06042173313654 27.936113797246794 27.733452697335082 22.27001177228159 78-79 22.012398766092872 27.92605057101163 27.712428424767864 22.349122238127634 80-81 22.018212588526932 27.9771983437496 27.68045041593641 22.324138651787056 82-83 22.113102109025697 27.921005130143712 27.725683505853603 22.240209254976993 84-85 22.16701389348878 27.924840323802314 27.7018014748652 22.206344307843707 86-87 22.066171113749427 27.90900579430266 27.792957014819603 22.231866077128313 88-89 22.098028941798812 27.858091595119706 27.783623172546466 22.260256290535015 90-91 22.141929242477552 27.868983589739027 27.8293053610994 22.15978180668402 92-93 22.200663929366975 27.795769976428534 27.83051928536851 22.173046808835977 94-95 22.019441830317426 27.788210036865557 27.925226319659558 22.267121813157463 96-97 22.01745902487963 27.834194888949526 27.93724892515436 22.21109716101648 98-99 22.182498606048107 28.411786506678517 28.029300719342277 21.376414167931106 100-101 22.409590332262404 31.279411077553064 25.316104038434585 20.99489455174995 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2452.0 1 2017.5 2 2268.5 3 3089.5 4 3980.5 5 5959.0 6 7755.0 7 9745.5 8 11547.0 9 11927.0 10 11028.5 11 10048.5 12 11117.0 13 15142.0 14 24864.0 15 38097.0 16 48388.0 17 53829.0 18 54521.5 19 51306.5 20 46243.0 21 41294.0 22 38818.0 23 41036.0 24 47555.0 25 59233.0 26 75309.0 27 92953.0 28 113008.5 29 134874.0 30 155775.5 31 176340.5 32 197974.5 33 219631.0 34 240306.0 35 259054.5 36 278826.5 37 295235.5 38 307111.5 39 318433.5 40 328677.5 41 336974.5 42 340008.5 43 342419.5 44 345786.5 45 348408.0 46 349722.0 47 347206.5 48 341322.5 49 334921.0 50 327633.0 51 316003.5 52 300223.0 53 282825.5 54 264210.5 55 244208.0 56 222603.5 57 199737.0 58 176831.5 59 153257.5 60 128977.0 61 105051.5 62 82766.0 63 63524.0 64 46999.0 65 34448.0 66 26062.5 67 19901.0 68 15231.0 69 11175.0 70 8017.0 71 5782.0 72 4056.5 73 2782.5 74 1773.5 75 1078.0 76 697.5 77 451.5 78 292.0 79 199.0 80 143.5 81 98.0 82 73.5 83 57.0 84 40.0 85 25.0 86 15.0 87 10.5 88 6.5 89 4.0 90 3.0 91 2.0 92 1.5 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.1631955167653114E-5 2 0.022507833249408776 3 1.1631955167653114E-5 4 1.1631955167653114E-5 5 1.1631955167653114E-5 6 1.1631955167653114E-5 7 1.1631955167653114E-5 8 0.0 9 0.0 10-11 3.5477463261342E-4 12-13 0.0017680571854832735 14-15 2.9079887919132785E-5 16-17 1.1631955167653114E-5 18-19 1.1631955167653114E-5 20-21 1.1632317789338493E-5 22-23 5.81660545464973E-6 24-25 0.008179673093488951 26-27 0.026537038664348943 28-29 0.3294596254328928 30-31 0.31572289039029633 32-33 0.3171556368294196 34-35 0.16930291705069905 36-37 0.02923845939685856 38-39 0.028094932316110353 40-41 0.010782360485270275 42-43 0.008544973082439716 44-45 0.003115003274962902 46-47 0.0020205133681533115 48-49 0.001823704002803853 50-51 0.0018252205772901371 52-53 2.855862153742235E-4 54-55 1.875180017281659E-5 56-57 1.8891760226534874E-4 58-59 4.1253669831267415E-4 60-61 0.0028473949855134777 62-63 0.0025612709891157594 64-65 0.0026229675499862444 66-67 0.0065003501578914675 68-69 0.009966172777847237 70-71 0.013950753437938498 72-73 0.013149082687203712 74-75 0.010195885542768044 76-77 0.004729710854243865 78-79 0.0019921173663285754 80-81 0.0018879167178419373 82-83 3.147800313563836E-4 84-85 3.6195840345070875E-5 86-87 0.0 88-89 7.726113438809145E-4 90-91 0.0024350666484526697 92-93 0.014783124289998329 94-95 3.507429944737713E-4 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 159.0 20-21 533.0 22-23 1174.0 24-25 2618.0 26-27 3404.0 28-29 5516.0 30-31 13643.0 32-33 18811.0 34-35 27950.0 36-37 37370.0 38-39 43642.0 40-41 49034.0 42-43 60776.0 44-45 73231.0 46-47 72404.0 48-49 63635.0 50-51 56446.0 52-53 53242.0 54-55 57969.0 56-57 61544.0 58-59 63729.0 60-61 64120.0 62-63 66034.0 64-65 73363.0 66-67 77026.0 68-69 76246.0 70-71 74423.0 72-73 73449.0 74-75 75905.0 76-77 76156.0 78-79 81525.0 80-81 82597.0 82-83 81563.0 84-85 84684.0 86-87 89063.0 88-89 96236.0 90-91 103729.0 92-93 109083.0 94-95 123960.0 96-97 186485.0 98-99 765041.0 100-101 5369489.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.22627725141962 #Duplication Level Percentage of deduplicated Percentage of total 1 90.2732923614836 77.83929935559745 2 6.90026124356035 11.899676781889205 3 1.6168846750881987 4.182538388331795 4 0.5944753146660193 2.050375732060684 5 0.2516354344287544 1.08487933676676 6 0.1342177868714773 0.694386006171117 7 0.06793962127378184 0.41007264342166905 8 0.041875954695862326 0.28886461438186495 9 0.02668621962078307 0.20709480346325235 >10 0.09078816091243722 1.1889555599156942 >50 0.0015883505843667365 0.08760992448486993 >100 3.3416700935810323E-4 0.05371103316196615 >500 2.0709805085573573E-5 0.01253582035382332 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.1631955167653114E-5 2 0.0 1.1631955167653114E-5 0.0 0.0 1.1631955167653114E-5 3 0.0 1.1631955167653114E-5 0.0 0.0 1.1631955167653114E-5 4 0.0 3.4895865502959345E-5 0.0 0.0 1.1631955167653114E-5 5 0.0 3.4895865502959345E-5 0.0 0.0 2.326391033530623E-5 6 0.0 3.4895865502959345E-5 0.0 0.0 3.4895865502959345E-5 7 0.0 3.4895865502959345E-5 0.0 0.0 3.4895865502959345E-5 8 0.0 3.4895865502959345E-5 0.0 0.0 4.652782067061246E-5 9 0.0 1.0468759650887803E-4 0.0 2.326391033530623E-5 4.652782067061246E-5 10-11 0.0 1.0468759650887803E-4 0.0 3.4895865502959345E-5 4.652782067061246E-5 12-13 0.0 1.1050357409270458E-4 0.0 5.2343798254439014E-5 5.2343798254439014E-5 14-15 0.0 1.8611128268244983E-4 0.0 9.887161892505148E-5 9.305564134122491E-5 16-17 5.815977583826557E-6 1.8611128268244983E-4 0.0 1.221355292603577E-4 1.1631955167653114E-4 18-19 1.1631955167653114E-5 1.919272602662764E-4 0.0 1.919272602662764E-4 1.337674844280108E-4 20-21 1.1631955167653114E-5 1.9774323785010296E-4 0.0 2.442710585207154E-4 1.5121541717949048E-4 22-23 1.1631955167653114E-5 2.3845508093688886E-4 0.0 4.187503860355121E-4 1.8611128268244983E-4 24-25 2.326391033530623E-5 3.373266998619403E-4 0.0 0.0010003481444181678 2.3263910335306228E-4 26-27 2.326391033530623E-5 3.7222256536489966E-4 0.0 0.0029487006350000645 2.3263910335306228E-4 28-29 2.326391033530623E-5 3.7222256536489966E-4 0.0 0.013033605765355316 2.3263910335306228E-4 30-31 2.907988791913279E-5 3.8385452053255276E-4 0.0 0.01845991285106549 2.3845508093688886E-4 32-33 3.4895865502959345E-5 3.8385452053255276E-4 0.0 0.02084446366043438 2.6753496885602166E-4 34-35 3.4895865502959345E-5 4.303823412031652E-4 0.0 0.02424681054697292 2.9079887919132786E-4 36-37 3.4895865502959345E-5 4.769101618737777E-4 0.0 0.029504454282752127 2.9079887919132786E-4 38-39 3.4895865502959345E-5 4.8272613945760426E-4 0.0 0.038693698865198085 2.9079887919132786E-4 40-41 3.4895865502959345E-5 5.350699377120433E-4 0.0 0.05817140779343323 2.9079887919132786E-4 42-43 3.4895865502959345E-5 5.641498256311761E-4 0.0 0.06772705896366026 3.0824681194280756E-4 44-45 3.4895865502959345E-5 6.339415566370948E-4 0.0 0.08224373901289134 3.256947446942872E-4 46-47 3.4895865502959345E-5 6.979173100591869E-4 0.0 0.0988774349026353 3.3151072227811376E-4 48-49 4.07118430867859E-5 6.979173100591869E-4 0.0 0.11359185818971648 3.5477463261342E-4 50-51 4.652782067061246E-5 7.153652428106666E-4 0.0 0.12841096907330657 3.6059061019724656E-4 52-53 4.652782067061246E-5 7.211812203944931E-4 0.0 0.14801081353080203 3.7803854294872626E-4 54-55 4.652782067061246E-5 7.269971979783197E-4 0.0 0.19153758976816 3.954864757002059E-4 56-57 4.652782067061246E-5 7.328131755621462E-4 0.0 0.23687313503408802 3.954864757002059E-4 58-59 4.652782067061246E-5 7.328131755621462E-4 0.0 0.2724145740488521 3.954864757002059E-4 60-61 4.652782067061246E-5 7.328131755621462E-4 0.0 0.29272978374915826 3.954864757002059E-4 62-63 4.652782067061246E-5 7.502611083136259E-4 0.0 0.3089854410959535 3.954864757002059E-4 64-65 4.652782067061246E-5 8.723966375739836E-4 0.0 0.31777338322511545 3.954864757002059E-4 66-67 4.652782067061246E-5 8.840285927416367E-4 0.0 0.3235021211451846 4.07118430867859E-4 68-69 4.652782067061246E-5 8.898445703254633E-4 0.0 0.3300160160390704 4.187503860355121E-4 70-71 4.652782067061246E-5 9.072925030769429E-4 0.0 0.3358029137349778 4.7109418428995116E-4 72-73 4.652782067061246E-5 9.18924458244596E-4 0.0 0.3399497057522461 5.11806027376737E-4 74-75 4.652782067061246E-5 9.421883685799023E-4 0.0 0.34344510828012587 5.11806027376737E-4 76-77 4.652782067061246E-5 0.0010003481444181678 0.0 0.34697540667350857 5.11806027376737E-4 78-79 4.652782067061246E-5 0.001011980099585821 0.0 0.35007532272568814 5.11806027376737E-4 80-81 4.652782067061246E-5 0.001011980099585821 0.0 0.35133157388379466 5.176220049605636E-4 82-83 4.652782067061246E-5 0.001023612054753474 0.0 0.35179103611291695 5.234379825443901E-4 84-85 4.652782067061246E-5 0.0010352440099211271 0.0 0.35210509890244357 5.350699377120432E-4 86-87 4.652782067061246E-5 0.0010817718305917397 0.0 0.352227234431704 5.467018928796964E-4 88-89 4.652782067061246E-5 0.001105035740927046 0.0 0.35227376225237456 5.641498256311761E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10930 0.0 53.046757 1 GTATCAA 20170 0.0 37.78739 1 TCAACGC 25095 0.0 29.611109 4 ATCAACG 25205 0.0 29.498943 3 CAACGCA 25825 0.0 28.85768 5 TATCAAC 26175 0.0 28.6089 2 AACGCAG 26470 0.0 28.186993 6 ACGCAGA 31030 0.0 23.989908 7 CGCAGAG 31960 0.0 23.265053 8 GTGGTAT 5505 0.0 22.424028 1 TGGTATC 5220 0.0 22.329956 2 GCAGAGT 36625 0.0 20.125608 9 GTACATG 26465 0.0 20.120457 1 TACATGG 26535 0.0 19.645931 2 GAGTACT 21295 0.0 19.275652 12-13 ACATGGG 26900 0.0 18.943674 3 AGAGTAC 33205 0.0 18.598022 10-11 CAGAGTA 36000 0.0 18.055998 10-11 GTACTTT 23880 0.0 17.20723 14-15 AGTACTT 23475 0.0 17.146719 12-13 >>END_MODULE