##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139637_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11666924 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.47501989384691 34.0 31.0 34.0 31.0 34.0 2 32.60249788204671 34.0 31.0 34.0 31.0 34.0 3 32.65972907683293 34.0 31.0 34.0 31.0 34.0 4 36.18991381104394 37.0 35.0 37.0 35.0 37.0 5 36.10597420536896 37.0 35.0 37.0 35.0 37.0 6 36.14034144732579 37.0 36.0 37.0 35.0 37.0 7 36.090438576611966 37.0 36.0 37.0 35.0 37.0 8 36.06137127489645 37.0 35.0 37.0 35.0 37.0 9 37.77349136756184 39.0 38.0 39.0 35.0 39.0 10-11 37.69864970406938 39.0 37.5 39.0 35.0 39.0 12-13 37.65036148345528 39.0 37.0 39.0 35.0 39.0 14-15 38.99217167267054 40.0 38.0 41.0 35.5 41.0 16-17 38.962157634694464 40.0 38.0 41.0 35.0 41.0 18-19 38.953626722862 40.0 38.0 41.0 35.0 41.0 20-21 38.91897373847122 40.0 38.0 41.0 35.0 41.0 22-23 38.81652193655969 40.0 38.0 41.0 35.0 41.0 24-25 38.69487201713573 40.0 38.0 41.0 34.0 41.0 26-27 38.62508803254841 40.0 38.0 41.0 34.5 41.0 28-29 38.566594931035254 40.0 38.0 41.0 34.0 41.0 30-31 38.49855572090771 40.0 38.0 41.0 34.0 41.0 32-33 38.39531089520683 40.0 38.0 41.0 34.0 41.0 34-35 38.28739185721997 40.0 38.0 41.0 34.0 41.0 36-37 38.43257534658283 40.0 38.0 41.0 34.0 41.0 38-39 38.49994659341991 40.0 38.0 41.0 34.0 41.0 40-41 38.42602664117592 40.0 38.0 41.0 34.0 41.0 42-43 38.3868369064142 40.0 38.0 41.0 34.0 41.0 44-45 38.35552952382238 40.0 38.0 41.0 34.0 41.0 46-47 38.25979562427164 40.0 38.0 41.0 33.0 41.0 48-49 38.17704262125858 40.0 38.0 41.0 33.0 41.0 50-51 38.10646306039855 40.0 37.0 41.0 33.0 41.0 52-53 38.02365706338799 40.0 37.0 41.0 33.0 41.0 54-55 37.89047429399976 40.0 37.0 41.0 33.0 41.0 56-57 37.72483670034134 40.0 36.5 41.0 33.0 41.0 58-59 37.5851286378736 39.0 36.0 41.0 33.0 41.0 60-61 37.42441986364161 39.0 36.0 41.0 32.0 41.0 62-63 37.18867403614625 39.0 35.0 40.5 32.0 41.0 64-65 36.84409126077274 38.0 35.0 40.0 31.5 41.0 66-67 36.53029478908803 38.0 35.0 40.0 31.0 41.0 68-69 36.23392710290374 37.0 35.0 40.0 31.0 41.0 70-71 35.91241004820051 37.0 35.0 39.0 31.0 41.0 72-73 35.592089693825145 36.0 34.0 39.0 30.5 40.5 74-75 35.26196820476326 36.0 34.0 38.5 30.0 40.0 76-77 34.28922332135097 35.0 33.0 37.0 29.0 39.0 78-79 34.60507974012971 35.0 34.0 37.0 30.0 39.0 80-81 34.45983341601101 35.0 34.0 37.0 30.0 39.0 82-83 34.23606233564472 35.0 34.0 36.0 30.0 38.5 84-85 33.9895826563963 35.0 34.0 36.0 30.0 37.0 86-87 33.78177529057049 35.0 34.0 35.5 30.0 37.0 88-89 33.59410609451619 35.0 33.0 35.0 29.5 36.5 90-91 33.4429766245846 35.0 33.0 35.0 29.0 36.0 92-93 33.32533788934923 35.0 33.0 35.0 29.0 36.0 94-95 33.275180156842524 35.0 33.0 35.0 29.0 36.0 96-97 33.30024139831754 35.0 33.0 35.0 29.5 35.0 98-99 33.35479857609755 35.0 33.0 35.0 30.0 35.0 100-101 31.890401975795974 33.5 31.0 34.5 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 0.0 15 0.0 16 1.0 17 0.0 18 2.0 19 8.0 20 57.0 21 373.0 22 1795.0 23 5908.0 24 15230.0 25 31512.0 26 54976.0 27 86214.0 28 122538.0 29 163015.0 30 206411.0 31 258171.0 32 322500.0 33 412832.0 34 562292.0 35 800425.0 36 1309655.0 37 2475729.0 38 3167378.0 39 1577869.0 40 92032.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.997606995024654 21.578109597210783 15.4533059750726 23.970977432691967 2 14.097343641146272 22.090716847039676 40.697831528745915 23.114107983068134 3 17.00338075487097 26.663761587140257 31.501918972452113 24.830938685536655 4 12.216470823793184 18.91603620183937 39.09524200943848 29.772250964928965 5 12.979534189011824 38.063710211117396 35.84578141910792 13.110974180762861 6 29.40593323636973 38.75256376553848 18.78116771340099 13.060335284690794 7 26.117507781187516 33.01692880238068 23.40656973677974 17.458993679652067 8 24.410420811039895 36.76454365902646 21.218379516175773 17.606656013757867 9 25.31332383011356 16.90554570386725 21.473091062656366 36.30803940336283 10-11 23.76972495567154 27.079242159195395 29.31227218101013 19.838760704122944 12-13 24.78176294237069 24.610013852640865 29.308781806313572 21.299441398674873 14-15 21.99286247018976 26.11497386007097 26.830111096573333 25.06205257316594 16-17 21.51318640256791 29.265744306971758 27.47357090324626 21.747498387214076 18-19 21.561287276749212 28.357680224881896 29.23206665270126 20.84896584566763 20-21 22.36587463575344 27.456420699593405 29.139489247376343 21.038215417276813 22-23 22.126869234866746 27.274254684841807 28.99122565642133 21.60765042387011 24-25 21.904226808587808 27.498140382573144 29.007622394981453 21.59001041385759 26-27 21.845866919488756 27.61777908829194 28.957633497394013 21.578720494825287 28-29 21.817647897198345 27.61026637385956 28.999693989394704 21.5723917395474 30-31 22.049459431848582 27.51303749548067 28.87506491656533 21.56243815610542 32-33 21.874909041662523 27.68094652465952 28.76026841357345 21.683876020104503 34-35 21.98231789920993 27.608242672198763 28.80839058396597 21.601048844625335 36-37 21.989767423695053 27.57654144996214 28.755479180092042 21.678211946250766 38-39 21.823625065884993 27.755765299976954 28.80661159882391 21.61399803531414 40-41 22.105280408958812 27.6178130722935 28.630732886736894 21.646173632010797 42-43 21.988651772920903 27.724827381708817 28.377676440568365 21.908844404801915 44-45 22.05348450330331 27.794138325275096 28.23532816970334 21.917049001718254 46-47 22.16784673804871 27.737676234344555 28.005015845022108 22.08946118258463 48-49 22.07899862883638 27.88494079377038 27.95760904626053 22.07845153113271 50-51 22.128188284996153 27.957910590019026 27.8467553185617 22.06714580642312 52-53 22.266285743648094 27.84859126222426 27.729248285795403 22.15587470833224 54-55 22.261610788582715 27.737846902433937 27.77632278978701 22.224219519196335 56-57 22.185777969564814 27.854145960151527 27.783711385665256 22.176364684618406 58-59 22.12785509656726 27.897441359815655 27.79125335636144 22.183450187255648 60-61 22.25686866019955 27.860938144520603 27.73292351482633 22.149269680453518 62-63 22.224465455705417 27.98616430503821 27.712975979771702 22.07639425948467 64-65 22.215611661323397 27.884265350560227 27.700444613162638 22.199678374953734 66-67 22.25345357519815 27.984900563873378 27.494609272640545 22.267036588287926 68-69 22.181098809829454 27.947502461692697 27.59698808667002 22.27441064180783 70-71 22.189426793395086 27.740948743804584 27.67856753648923 22.391056926311105 72-73 22.287018342671573 27.73752628967239 27.548346773538224 22.427108594117808 74-75 22.15492952268847 27.867546990275905 27.53677485762585 22.440748629409775 76-77 22.326019681102053 27.75893603731021 27.51216414999844 22.40288013158929 78-79 22.295216850708293 27.73603469925707 27.448122161538812 22.52062628849583 80-81 22.259915686982627 27.82062780462023 27.389622766644734 22.529833741752412 82-83 22.33487831088122 27.74774335902956 27.4887595023094 22.42861882777982 84-85 22.364726029287876 27.729422247347074 27.487785677139975 22.41806604622507 86-87 22.277098466440876 27.727891215858808 27.554296166832586 22.440714150867734 88-89 22.300518510242547 27.706061770805036 27.54883934577522 22.444580373177196 90-91 22.332961894483585 27.74513145945454 27.571398277374897 22.350508368686977 92-93 22.4221666456713 27.6172723463396 27.573537378949958 22.38702362903915 94-95 22.257019044973493 27.60834626772018 27.641413386912394 22.493221300393927 96-97 22.26710103298607 27.626670467168076 27.687770051722705 22.418458448123154 98-99 22.408697983022122 28.193782651916937 27.79460655618472 21.60291280887622 100-101 22.70742183304376 31.04856819926305 24.973941194568823 21.270068773124372 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2944.0 1 2442.5 2 2739.5 3 3708.0 4 4813.5 5 7288.5 6 9530.0 7 11913.5 8 14181.5 9 14842.0 10 13969.5 11 12833.0 12 14068.5 13 18882.0 14 30675.5 15 47175.0 16 60434.5 17 67332.5 18 68191.5 19 64949.0 20 59754.5 21 54660.0 22 52249.5 23 55544.0 24 65221.5 25 81556.5 26 103581.5 27 128336.5 28 156575.0 29 186887.5 30 213849.0 31 240120.5 32 269263.5 33 299256.0 34 326294.0 35 350691.0 36 379368.5 37 403654.5 38 419981.5 39 434417.0 40 448655.5 41 462183.0 42 468568.5 43 473712.0 44 479397.0 45 482314.0 46 481643.0 47 476463.0 48 471263.0 49 465889.0 50 456691.0 51 442189.5 52 423950.5 53 402219.0 54 377179.5 55 350592.0 56 321582.0 57 290484.0 58 258905.5 59 224871.5 60 189142.5 61 154676.5 62 123365.0 63 95523.5 64 71173.0 65 53010.0 66 40221.5 67 30654.0 68 23408.5 69 17380.0 70 12553.5 71 9073.5 72 6468.5 73 4529.5 74 3108.0 75 2079.5 76 1356.0 77 843.0 78 544.5 79 360.5 80 237.0 81 155.0 82 106.0 83 70.5 84 48.5 85 35.5 86 26.0 87 20.5 88 14.0 89 8.0 90 5.0 91 2.5 92 1.5 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 2.5713718543122418E-5 2 0.023673763538701376 3 2.5713718543122418E-5 4 2.5713718543122418E-5 5 2.5713718543122418E-5 6 2.5713718543122418E-5 7 2.5713718543122418E-5 8 8.571239514374139E-6 9 8.571239514374139E-6 10-11 3.514208200893397E-4 12-13 0.0016756773250601444 14-15 2.142809878593535E-5 16-17 4.2856197571870694E-6 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.008505284551068018 26-27 0.027938801716587424 28-29 0.3301417344157978 30-31 0.31577402024108076 32-33 0.31793714894359093 34-35 0.16888793725886764 36-37 0.02798203943515325 38-39 0.026772491478871143 40-41 0.009955139050579355 42-43 0.007493275084369055 44-45 0.0026308199801352993 46-47 0.0018686521682729402 48-49 0.0016549431647838305 50-51 0.0018123813614700785 52-53 2.086897774054546E-4 54-55 1.870030627361615E-5 56-57 1.367659770014333E-4 58-59 2.8556595459844E-4 60-61 0.0021957512741363275 62-63 0.0019451398764152225 64-65 0.0019940707995082336 66-67 0.0069346825715923 68-69 0.010866743811028676 70-71 0.015345844555108863 72-73 0.014670795198620884 74-75 0.011339383977465995 76-77 0.005550432975741355 78-79 0.0023736807552319347 80-81 0.002156888172986089 82-83 3.48739880208941E-4 84-85 0.0 86-87 0.0 88-89 6.247961957409234E-4 90-91 0.002637673421977245 92-93 0.015901095654778992 94-95 4.307621360800323E-4 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 234.0 20-21 764.0 22-23 1595.0 24-25 3821.0 26-27 5082.0 28-29 8832.0 30-31 24179.0 32-33 33478.0 34-35 48069.0 36-37 65995.0 38-39 74246.0 40-41 81172.0 42-43 97040.0 44-45 115554.0 46-47 113709.0 48-49 100412.0 50-51 90363.0 52-53 84687.0 54-55 91467.0 56-57 95949.0 58-59 99163.0 60-61 99054.0 62-63 100189.0 64-65 109091.0 66-67 114350.0 68-69 114090.0 70-71 112761.0 72-73 110320.0 74-75 112496.0 76-77 113445.0 78-79 119261.0 80-81 120783.0 82-83 118339.0 84-85 122012.0 86-87 128352.0 88-89 137558.0 90-91 146980.0 92-93 152538.0 94-95 172916.0 96-97 254052.0 98-99 1008571.0 100-101 6963955.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.06665713749047 #Duplication Level Percentage of deduplicated Percentage of total 1 89.84690330414608 76.42975718239053 2 7.040805491969512 11.978755735142608 3 1.755251578870933 4.479401527495574 4 0.6309212158680453 2.146814350040625 5 0.2770452544946217 1.1783656837831387 6 0.14170477304205195 0.7232610805868481 7 0.08783220105346973 0.5230114212852646 8 0.059283456566563746 0.40344363789385485 9 0.036437349071374074 0.27896431324082716 >10 0.1204921314775608 1.5924585561349145 >50 0.002668183206943217 0.15171566501664258 >100 6.042263639379291E-4 0.08502069992507985 >500 5.0833868872049896E-5 0.029030147064120604 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.428495805749656E-5 0.0 0.0 0.0 3 0.0 5.142743708624484E-5 0.0 8.57123951437414E-6 0.0 4 0.0 5.999867660061898E-5 0.0 8.57123951437414E-6 0.0 5 0.0 7.714115562936726E-5 0.0 8.57123951437414E-6 0.0 6 1.714247902874828E-5 7.714115562936726E-5 0.0 8.57123951437414E-6 8.57123951437414E-6 7 1.714247902874828E-5 7.714115562936726E-5 0.0 1.714247902874828E-5 8.57123951437414E-6 8 1.714247902874828E-5 1.1142611368686382E-4 0.0 1.714247902874828E-5 8.57123951437414E-6 9 1.714247902874828E-5 2.0570974834497937E-4 0.0 5.999867660061898E-5 8.57123951437414E-6 10-11 1.714247902874828E-5 2.0570974834497937E-4 0.0 7.714115562936726E-5 8.57123951437414E-6 12-13 1.714247902874828E-5 2.0570974834497937E-4 0.0 8.142677538655434E-5 8.57123951437414E-6 14-15 1.714247902874828E-5 3.04279002760282E-4 0.0 8.57123951437414E-5 1.285685927156121E-5 16-17 6.856991611499312E-5 3.128502422746561E-4 0.0 8.57123951437414E-5 1.714247902874828E-5 18-19 6.856991611499312E-5 3.4713520033215266E-4 0.0 1.1571173344405089E-4 2.571371854312242E-5 20-21 6.856991611499312E-5 3.7713453863246214E-4 0.0 2.142809878593535E-4 3.428495805749656E-5 22-23 6.856991611499312E-5 4.414188349902682E-4 0.0 6.042723857633769E-4 3.857057781468363E-5 24-25 6.856991611499312E-5 5.057031313480743E-4 0.0 0.0015642512113732804 4.28561975718707E-5 26-27 6.856991611499312E-5 5.399880894055709E-4 0.0 0.004718467352662964 4.28561975718707E-5 28-29 6.856991611499312E-5 5.399880894055709E-4 0.0 0.023103776110995494 4.28561975718707E-5 30-31 6.856991611499312E-5 6.214148647921251E-4 0.0 0.03230928734943332 4.7141817329057775E-5 32-33 6.856991611499312E-5 6.257004845493122E-4 0.0 0.03562635704149611 5.999867660061898E-5 34-35 6.856991611499312E-5 7.585546970221114E-4 0.0 0.04029768257683002 5.999867660061898E-5 36-37 6.856991611499312E-5 8.785520502233494E-4 0.0 0.047073247412942776 5.999867660061898E-5 38-39 6.856991611499312E-5 8.956945292520977E-4 0.0 0.060024390319162096 5.999867660061898E-5 40-41 6.856991611499312E-5 0.001045691220753645 0.0 0.08914089094949106 5.999867660061898E-5 42-43 6.856991611499312E-5 0.0010885474183255158 0.0 0.10154347452679044 5.999867660061898E-5 44-45 7.285553587218019E-5 0.0012128303912839408 0.0 0.11995449700366609 6.856991611499312E-5 46-47 7.714115562936726E-5 0.0013113996456992434 0.0 0.14176830156774828 8.57123951437414E-5 48-49 8.142677538655434E-5 0.0013242565049708045 0.0 0.15987504504186364 8.57123951437414E-5 50-51 9.856925441530261E-5 0.0014313969989004816 0.0 0.1770903796064841 8.57123951437414E-5 52-53 1.0285487417248969E-4 0.0014399682384148556 0.0 0.2032069464067821 1.1142611368686382E-4 54-55 1.0285487417248969E-4 0.0014485394779292296 0.0 0.2652755773501224 1.285685927156121E-4 56-57 1.0285487417248969E-4 0.001474253196472352 0.0 0.3309312720302283 1.285685927156121E-4 58-59 1.0285487417248969E-4 0.001474253196472352 0.0 0.37641455451325473 1.328542124727992E-4 60-61 1.0285487417248969E-4 0.0014828244359867263 0.0 0.3987597759272281 1.4571107174436037E-4 62-63 1.1142611368686382E-4 0.0015171093940442228 0.0 0.41186091552494897 1.4571107174436037E-4 64-65 1.1142611368686382E-4 0.001705676663360454 0.0 0.4214692750205624 1.4571107174436037E-4 66-67 1.285685927156121E-4 0.0017356760016607633 0.0 0.4277177086265411 1.4999669150154743E-4 68-69 1.285685927156121E-4 0.001774246579475447 0.0 0.43355472273582996 1.6285355077310867E-4 70-71 1.285685927156121E-4 0.0017871034387470083 0.0 0.43923745453386 1.6285355077310867E-4 72-73 1.285685927156121E-4 0.0017999602980185694 0.0 0.44345450437493206 1.7999602980185695E-4 74-75 1.285685927156121E-4 0.001829959636318879 0.0 0.447071567449998 1.7999602980185695E-4 76-77 1.285685927156121E-4 0.0019413857500057427 0.0 0.4506200606089489 1.7999602980185695E-4 78-79 1.285685927156121E-4 0.0019928131870919877 0.0 0.45380856170829603 1.7999602980185695E-4 80-81 1.285685927156121E-4 0.0020013844266063615 0.0 0.45515424631205276 1.885672693162311E-4 82-83 1.285685927156121E-4 0.0020056700463635486 0.0 0.4556428069643721 1.9713850883060522E-4 84-85 1.285685927156121E-4 0.002022812525392297 0.0 0.4560499408413049 2.0142412858779228E-4 86-87 1.328542124727992E-4 0.0020442406241782327 0.0 0.4561399388562058 2.0570974834497937E-4 88-89 1.3713983222998625E-4 0.0021599523576222835 0.0 0.45616993819450613 2.0570974834497937E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14020 0.0 51.322556 1 GTATCAA 25735 0.0 37.07124 1 TCAACGC 32375 0.0 28.886871 4 ATCAACG 32865 0.0 28.494812 3 CAACGCA 33390 0.0 28.072367 5 TATCAAC 34120 0.0 27.66325 2 AACGCAG 34475 0.0 27.201149 6 ACGCAGA 40035 0.0 23.413324 7 CGCAGAG 41270 0.0 22.65116 8 GTGGTAT 7130 0.0 22.261227 1 TGGTATC 6840 0.0 21.596169 2 GCAGAGT 46930 0.0 19.729948 9 GTACATG 34205 0.0 19.328531 1 GAGTACT 27280 0.0 18.777853 12-13 TACATGG 34720 0.0 18.712683 2 AGAGTAC 42450 0.0 18.447632 10-11 ACATGGG 34370 0.0 18.345299 3 CAGAGTA 46265 0.0 17.676495 10-11 GTACTTT 30040 0.0 16.96124 14-15 AGTACTT 30195 0.0 16.488546 12-13 >>END_MODULE