##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139636_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8211202 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.941383368719954 34.0 31.0 34.0 31.0 34.0 2 33.07193855418488 34.0 33.0 34.0 31.0 34.0 3 33.130141725900785 34.0 33.0 34.0 31.0 34.0 4 36.483146194674056 37.0 37.0 37.0 35.0 37.0 5 36.448244483572566 37.0 37.0 37.0 35.0 37.0 6 36.47665615825795 37.0 37.0 37.0 35.0 37.0 7 36.45222843135512 37.0 37.0 37.0 35.0 37.0 8 36.44130092037682 37.0 37.0 37.0 35.0 37.0 9 38.237485327970255 39.0 39.0 39.0 37.0 39.0 10-11 38.17949132173341 39.0 39.0 39.0 37.0 39.0 12-13 38.15106874730399 39.0 39.0 39.0 37.0 39.0 14-15 39.67027196505457 41.0 40.0 41.0 37.0 41.0 16-17 39.64274402212977 41.0 40.0 41.0 37.0 41.0 18-19 39.65136334485499 41.0 40.0 41.0 37.0 41.0 20-21 39.64352405751811 41.0 40.0 41.0 37.0 41.0 22-23 39.586085645203674 41.0 40.0 41.0 37.0 41.0 24-25 39.52371138155764 41.0 39.5 41.0 37.0 41.0 26-27 39.47555926789675 41.0 39.0 41.0 37.0 41.0 28-29 39.30903177737021 41.0 39.0 41.0 36.0 41.0 30-31 39.22563912294298 41.0 39.0 41.0 36.0 41.0 32-33 39.12314434422745 41.0 39.0 41.0 35.5 41.0 34-35 39.02951394834044 40.5 39.0 41.0 35.0 41.0 36-37 39.11987497438959 40.5 39.0 41.0 35.0 41.0 38-39 39.14352779490612 41.0 39.0 41.0 35.0 41.0 40-41 39.134417300600674 41.0 39.0 41.0 35.0 41.0 42-43 39.090329514697345 41.0 39.0 41.0 35.0 41.0 44-45 39.0229983927437 40.0 39.0 41.0 35.0 41.0 46-47 38.93539689164524 40.0 38.5 41.0 35.0 41.0 48-49 38.85612447999564 40.0 38.0 41.0 35.0 41.0 50-51 38.76381836111476 40.0 38.0 41.0 35.0 41.0 52-53 38.655012946528245 40.0 38.0 41.0 35.0 41.0 54-55 38.52854973991998 40.0 38.0 41.0 35.0 41.0 56-57 38.35477135772316 40.0 37.5 41.0 34.0 41.0 58-59 38.18993231325847 40.0 37.0 41.0 34.0 41.0 60-61 37.992921660657515 39.5 36.5 41.0 34.0 41.0 62-63 37.74139909471332 39.0 36.0 41.0 34.0 41.0 64-65 37.43956336441673 39.0 35.5 40.0 33.5 41.0 66-67 37.113548376317 38.0 35.0 40.0 33.0 41.0 68-69 36.80097651715137 37.5 35.0 40.0 33.0 41.0 70-71 36.47182790095742 37.0 35.0 39.5 32.5 41.0 72-73 36.13055304784287 36.5 35.0 39.0 32.0 40.5 74-75 35.76192351885893 36.0 35.0 39.0 32.0 40.0 76-77 34.82960261220896 35.0 34.0 37.0 30.5 39.0 78-79 35.061800166152864 35.0 34.0 37.0 31.0 39.0 80-81 34.8833944827771 35.0 34.0 37.0 31.0 39.0 82-83 34.61753493226689 35.0 34.0 36.0 31.0 38.5 84-85 34.370292576343715 35.0 34.0 36.0 31.0 37.0 86-87 34.12195145717561 35.0 34.0 35.5 31.0 37.0 88-89 33.82391560626334 35.0 34.0 35.0 31.0 36.5 90-91 33.74720421706738 35.0 34.0 35.0 31.0 36.0 92-93 33.659624133678065 35.0 34.0 35.0 31.0 36.0 94-95 33.55326653014997 35.0 33.5 35.0 30.5 35.5 96-97 33.518451641536075 35.0 33.0 35.0 30.0 35.0 98-99 33.52025091851619 34.5 33.0 35.0 30.5 35.0 100-101 32.45070975418444 34.0 31.5 34.5 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 7.0 20 23.0 21 155.0 22 707.0 23 2339.0 24 5984.0 25 12489.0 26 22187.0 27 35191.0 28 50746.0 29 68758.0 30 88573.0 31 112352.0 32 143730.0 33 189117.0 34 275277.0 35 423736.0 36 806410.0 37 1914232.0 38 2718889.0 39 1268223.0 40 72077.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.69470966484801 20.87048178098207 15.150867108339828 24.283941445830084 2 13.878629992838665 21.442448689280894 41.207184231423156 23.471737086457285 3 16.970698558067028 26.466509158222916 31.062134645362434 25.500657638347622 4 12.034245908028058 18.538739770070148 38.97750633281372 30.449507989088076 5 13.166090218238505 37.787521921278255 35.577991036632895 13.468396823850352 6 29.692943784099768 38.20870274746688 18.732560405300077 13.365793063133284 7 26.307165822291505 32.86933700311769 23.12683895167576 17.696658222915044 8 24.617860407996346 36.32927753199562 21.12101506223024 17.931846997777793 9 25.525718882231978 16.839384327597053 21.30072577831336 36.334171011857606 10-11 24.044372192949975 26.876940924173258 28.927577416686745 20.15110946619002 12-13 24.949532358356304 24.471940892453993 28.966757851043003 21.611768898146703 14-15 22.15116278361716 25.787689279558496 26.748967660151056 25.312180276673292 16-17 21.66019087824795 28.94022212376469 27.339638377230425 22.05994862075693 18-19 21.67302058821595 28.026584901942492 29.159969514816463 21.14042499502509 20-21 22.497197215038625 27.134788640084658 29.117201442279555 21.25081270259716 22-23 22.23352621713495 27.029774178579302 28.952422942900956 21.784276661384794 24-25 22.003154847924673 27.219556232188964 29.008119539976178 21.76916937991019 26-27 21.935916936795145 27.36070317092564 28.926003449594536 21.777376442684684 28-29 21.904548477354616 27.35822220188914 28.973757874114835 21.763471446641404 30-31 22.130561314580333 27.23999135350669 28.881490898292807 21.74795643362017 32-33 21.961506371180164 27.39772721210641 28.788540368201478 21.85222604851195 34-35 22.05895598829567 27.4004122192701 28.77742768863661 21.76320410379762 36-37 22.05106827806531 27.31451937412979 28.7674029040558 21.8670094437491 38-39 21.94225314112021 27.467703888157306 28.786999128704245 21.803043842018237 40-41 22.159790130260006 27.363842774432655 28.623086107020253 21.853280988287086 42-43 22.073276786091277 27.443005364090478 28.428695985884193 22.055021863934048 44-45 22.178783860180054 27.561953350698154 28.212474033141703 22.04678875598009 46-47 22.268183782924762 27.53506190749072 27.917620954509342 22.279133355075174 48-49 22.195908055964537 27.625484942836685 27.89614861657535 22.28245838462343 50-51 22.197592657409135 27.77283758931435 27.77165661606521 22.257913137211315 52-53 22.41362146951334 27.67702051891468 27.601709396458023 22.307648615113955 54-55 22.39762253418397 27.577859602730964 27.6481316361403 22.376386226944767 56-57 22.372748014993032 27.720004731680483 27.62400442808864 22.28324282523785 58-59 22.269757082854007 27.75890874555231 27.667895074774606 22.30343909681907 60-61 22.37652833765299 27.738352626730713 27.626037760967343 22.259081274648963 62-63 22.34066468644019 27.849365792147484 27.57742351419435 22.232546007217977 64-65 22.343496537948834 27.721193612483713 27.576053959801172 22.35925588976628 66-67 22.401391240880763 27.805636344707434 27.396772784109853 22.39619963030195 68-69 22.349726485658408 27.752726930086887 27.50667656273788 22.390870021516825 70-71 22.343867376511923 27.567672583557695 27.563429777285144 22.52503026264524 72-73 22.390180132595724 27.570786742708552 27.47043825303244 22.56859487166328 74-75 22.31966616694388 27.72910178727067 27.392073192235415 22.559158853550034 76-77 22.462004141388128 27.621054045573008 27.395347156908045 22.52159465613082 78-79 22.407500635718055 27.60589681932371 27.356354528978827 22.630248015979404 80-81 22.385195992786848 27.663309500393417 27.299154436084283 22.652340070735445 82-83 22.47836401020673 27.585122082430935 27.382639326088615 22.553874581273725 84-85 22.510507818691618 27.561464894077663 27.387534001242535 22.540493285988177 86-87 22.43797805721464 27.56286273607959 27.459364536874542 22.539794669831224 88-89 22.48364506374366 27.5417429674221 27.410788448177676 22.563823520656562 90-91 22.501345586339 27.58153938227055 27.428376811423018 22.488738219967438 92-93 22.57114466573824 27.47452997129034 27.455867216375434 22.49845814659598 94-95 22.41051304728978 27.463201157280725 27.525156655661004 22.601129139768492 96-97 22.41364668059331 27.50700179876639 27.57672296029324 22.502628560347063 98-99 22.630831196712073 28.091414084557165 27.60295389243747 21.67480082629329 100-101 23.15786754088572 30.77974483444285 24.807984712649287 21.254402912022137 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2145.0 1 1797.5 2 2109.5 3 2948.0 4 4037.5 5 6284.5 6 8200.5 7 10011.5 8 11426.0 9 11528.0 10 10453.0 11 9536.0 12 10889.5 13 14974.0 14 24244.0 15 36583.0 16 46145.5 17 51027.5 18 51282.0 19 47813.5 20 42548.5 21 37425.0 22 34596.5 23 36282.5 24 42431.0 25 53117.0 26 67309.5 27 83188.0 28 100407.5 29 119419.0 30 137073.5 31 153334.0 32 171577.0 33 191431.0 34 211028.0 35 228965.5 36 249102.0 37 265829.0 38 278008.0 39 290172.0 40 302350.5 41 312059.0 42 316569.0 43 322121.5 44 327900.5 45 332058.0 46 333513.0 47 331735.0 48 330029.0 49 327616.0 50 323339.5 51 315664.0 52 303021.0 53 287021.0 54 270247.5 55 253446.5 56 234158.0 57 211968.0 58 189987.0 59 166243.0 60 140126.5 61 115015.5 62 92024.5 63 71348.0 64 53067.5 65 39373.0 66 29951.0 67 23073.5 68 17693.0 69 13142.5 70 9696.0 71 6953.0 72 4813.0 73 3262.5 74 2172.0 75 1399.5 76 894.5 77 536.0 78 330.5 79 202.5 80 136.5 81 94.5 82 61.0 83 35.0 84 21.0 85 17.5 86 12.0 87 7.5 88 7.5 89 7.0 90 5.0 91 3.5 92 3.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 2.4356969905258696E-5 2 0.005382890349062171 3 2.4356969905258696E-5 4 2.4356969905258696E-5 5 2.4356969905258696E-5 6 2.4356969905258696E-5 7 2.4356969905258696E-5 8 1.2178484952629348E-5 9 2.0703424419469892E-4 10-11 8.342262192551104E-4 12-13 0.0 14-15 1.2178484952629348E-5 16-17 0.001266562435073452 18-19 0.0 20-21 0.0 22-23 8.525626816262997E-4 24-25 0.002844264403793457 26-27 0.007633096717488186 28-29 0.3631670797092445 30-31 0.33404219603648483 32-33 0.33252606135038915 34-35 0.18651259143845064 36-37 0.049749483724517304 38-39 0.04793540657574814 40-41 0.027815994613738425 42-43 0.027187053125731383 44-45 0.0152630974047051 46-47 0.010419182722878052 48-49 0.010084828402171887 50-51 0.008953830546031837 52-53 0.007751437921145393 54-55 0.0012112316191487556 56-57 0.004212690028808166 58-59 0.0033640752742273112 60-61 0.006365947146049461 62-63 0.0018835415122689608 64-65 1.9887741244301903E-4 66-67 6.160673266062935E-4 68-69 0.0015727403966898639 70-71 0.003988502383006636 72-73 0.001981554719279273 74-75 0.001425017316119508 76-77 4.5793916038381407E-4 78-79 2.130073292883976E-4 80-81 0.0013589076283653477 82-83 0.001351468539501736 84-85 0.0 86-87 0.0037930240452386456 88-89 0.0019041632314007553 90-91 0.00489781249677646 92-93 0.013725662101506662 94-95 0.001539948118337394 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 93.0 20-21 402.0 22-23 814.0 24-25 1671.0 26-27 2674.0 28-29 5053.0 30-31 14532.0 32-33 20386.0 34-35 29373.0 36-37 40524.0 38-39 46657.0 40-41 51020.0 42-43 61892.0 44-45 75546.0 46-47 74705.0 48-49 64939.0 50-51 57478.0 52-53 53731.0 54-55 57838.0 56-57 60465.0 58-59 61453.0 60-61 61754.0 62-63 61299.0 64-65 66225.0 66-67 69984.0 68-69 70382.0 70-71 68953.0 72-73 67226.0 74-75 68296.0 76-77 70228.0 78-79 73670.0 80-81 74280.0 82-83 72905.0 84-85 73726.0 86-87 77517.0 88-89 82247.0 90-91 87660.0 92-93 89924.0 94-95 99710.0 96-97 150283.0 98-99 693847.0 100-101 5249840.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.89672658270977 #Duplication Level Percentage of deduplicated Percentage of total 1 90.07287949610667 77.3696550259444 2 7.04652460865109 12.105467953352774 3 1.629171738313958 4.198215580866962 4 0.6167602418025269 2.1191074342879044 5 0.2502477892387603 1.0747732965084686 6 0.13596526308089665 0.700738261656359 7 0.07691253122482836 0.46245742657822464 8 0.04168513943160938 0.28644936194552684 9 0.031444344456111335 0.24308696324872275 >10 0.09612851816625452 1.2177188569254098 >50 0.0017675167542210682 0.09913591297981891 >100 4.469278196361084E-4 0.07137382034058469 >500 4.3923543975587515E-5 0.027806065519192985 >1k 2.196140947502092E-5 0.024014039845645808 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.4356969905258693E-5 0.0 0.0 0.0 3 0.0 2.4356969905258693E-5 0.0 0.0 0.0 4 0.0 8.524939466840543E-5 0.0 0.0 0.0 5 0.0 8.524939466840543E-5 0.0 1.2178484952629346E-5 0.0 6 2.4356969905258693E-5 8.524939466840543E-5 0.0 1.2178484952629346E-5 1.2178484952629346E-5 7 2.4356969905258693E-5 9.742787962103477E-5 0.0 1.2178484952629346E-5 1.2178484952629346E-5 8 2.4356969905258693E-5 1.0960636457366413E-4 0.0 1.2178484952629346E-5 1.2178484952629346E-5 9 2.4356969905258693E-5 2.4356969905258693E-4 0.0 3.6535454857888044E-5 1.2178484952629346E-5 10-11 2.4356969905258693E-5 2.4356969905258693E-4 0.0 7.916015219209077E-5 1.2178484952629346E-5 12-13 2.4356969905258693E-5 2.4356969905258693E-4 0.0 9.133863714472009E-5 1.826772742894402E-5 14-15 2.4356969905258693E-5 3.409975786736217E-4 0.0 1.0960636457366413E-4 3.6535454857888044E-5 16-17 1.2178484952629347E-4 3.7753303353150975E-4 0.0 1.2178484952629347E-4 3.6535454857888044E-5 18-19 1.2178484952629347E-4 4.140684883893978E-4 0.0 1.4614181943155218E-4 6.089242476314673E-5 20-21 1.2178484952629347E-4 4.810501556288592E-4 0.0 1.8876651676575488E-4 6.089242476314673E-5 22-23 1.2787409200260816E-4 5.662995502972647E-4 0.0 4.384254582946565E-4 7.916015219209075E-5 24-25 1.4614181943155218E-4 6.211027325840967E-4 0.0 0.0014005257695523749 1.0960636457366413E-4 26-27 1.4614181943155218E-4 6.33281217536726E-4 0.0 0.003842312002554559 1.0960636457366413E-4 28-29 1.4614181943155218E-4 6.393704600130407E-4 0.0 0.018596546522665014 1.0960636457366413E-4 30-31 1.4614181943155218E-4 7.307090971577609E-4 0.0 0.02549565824832954 1.0960636457366413E-4 32-33 1.4614181943155218E-4 7.307090971577609E-4 0.0 0.027657339327421246 1.2178484952629347E-4 34-35 1.5223106190786684E-4 8.707616741129983E-4 0.0 0.030653246625768068 1.2178484952629347E-4 36-37 1.583203043841815E-4 0.0010229927360208653 0.0 0.035153196815764606 1.2178484952629347E-4 38-39 1.583203043841815E-4 0.0010412604634498094 0.0 0.04344065582602888 1.3396333447892282E-4 40-41 1.583203043841815E-4 0.0011691345554524174 0.0 0.06318197993424104 1.4614181943155218E-4 42-43 1.583203043841815E-4 0.0011995807678339908 0.0 0.07095794257649489 1.4614181943155218E-4 44-45 1.7049878933681086E-4 0.0013579010722181723 0.0 0.08200991767100602 1.4614181943155218E-4 46-47 1.826772742894402E-4 0.0014918644066970951 0.0 0.09559501763566405 1.4614181943155218E-4 48-49 1.826772742894402E-4 0.0014979536491734097 0.0 0.1071036859158988 1.4614181943155218E-4 50-51 1.826772742894402E-4 0.001638006226128647 0.0 0.11786946661402313 1.4614181943155218E-4 52-53 1.826772742894402E-4 0.0016440954686049618 0.0 0.13466968660617534 1.644095468604962E-4 54-55 1.826772742894402E-4 0.0016745416809865353 0.0 0.17385396194126024 1.8876651676575488E-4 56-57 1.826772742894402E-4 0.0017293448632733674 0.0 0.21485283153428694 1.9485575924206954E-4 58-59 1.826772742894402E-4 0.0017415233482259967 0.0 0.24364276996230272 1.9485575924206954E-4 60-61 2.0094500171838423E-4 0.0018024157729891433 0.0 0.2631161674015571 1.9485575924206954E-4 62-63 2.313912140999576E-4 0.0018389512278470315 0.0 0.2753616340214259 2.1921272914732825E-4 64-65 2.313912140999576E-4 0.0021312348667101356 0.0 0.2842580172793216 2.313912140999576E-4 66-67 2.313912140999576E-4 0.002186038048996968 0.0 0.28951303353638114 2.313912140999576E-4 68-69 2.313912140999576E-4 0.0022225735038548557 0.0 0.29488374540049067 2.313912140999576E-4 70-71 2.3748045657627227E-4 0.002277376686141688 0.0 0.30013267241507396 2.313912140999576E-4 72-73 2.6792666895784564E-4 0.002313912140999576 0.0 0.30455955169535476 2.313912140999576E-4 74-75 2.6792666895784564E-4 0.0023748045657627226 0.0 0.30829225733333565 2.313912140999576E-4 76-77 2.8010515391047497E-4 0.002460053960431128 0.0 0.3116535191802613 2.313912140999576E-4 78-79 2.8010515391047497E-4 0.0024965894152890163 0.0 0.3143936782946029 2.313912140999576E-4 80-81 2.8010515391047497E-4 0.0024965894152890163 0.0 0.31569677618453423 2.313912140999576E-4 82-83 2.8619439638678963E-4 0.0025148571427179604 0.0 0.31615346937025784 2.4356969905258693E-4 84-85 2.9228363886310435E-4 0.002533124870146904 0.0 0.316330057402071 2.4356969905258693E-4 86-87 2.9228363886310435E-4 0.0025818388099574214 0.0 0.31649446694893146 2.4356969905258693E-4 88-89 2.9228363886310435E-4 0.0027158021444363446 0.0 0.31651882391883673 2.4356969905258693E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10420 0.0 53.653133 1 GTATCAA 19540 0.0 38.500057 1 ATCAACG 24455 0.0 30.12869 3 TCAACGC 24400 0.0 30.108986 4 CAACGCA 25135 0.0 29.297401 5 TATCAAC 25295 0.0 29.231443 2 AACGCAG 25695 0.0 28.658892 6 ACGCAGA 29725 0.0 24.758986 7 CGCAGAG 30505 0.0 24.18221 8 GTGGTAT 5050 0.0 21.85212 1 TGGTATC 4765 0.0 20.996399 2 GCAGAGT 35080 0.0 20.955019 9 GTACATG 25185 0.0 19.879635 1 GAGTACT 20465 0.0 19.638363 12-13 TACATGG 25210 0.0 19.31488 2 ACATGGG 25010 0.0 18.987688 3 AGAGTAC 31745 0.0 18.96353 10-11 CAGAGTA 34060 0.0 18.859644 10-11 GTACTTT 22650 0.0 17.6588 14-15 AGTACTT 22400 0.0 17.414785 12-13 >>END_MODULE