##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139635_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10659627 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.91394792707099 34.0 31.0 34.0 31.0 34.0 2 33.04899327152817 34.0 33.0 34.0 31.0 34.0 3 33.10749353612467 34.0 33.0 34.0 31.0 34.0 4 36.471277559711986 37.0 37.0 37.0 35.0 37.0 5 36.436200159724166 37.0 37.0 37.0 35.0 37.0 6 36.464572259423335 37.0 37.0 37.0 35.0 37.0 7 36.43990816939467 37.0 37.0 37.0 35.0 37.0 8 36.42797745174386 37.0 37.0 37.0 35.0 37.0 9 38.218342255315314 39.0 39.0 39.0 37.0 39.0 10-11 38.158424211278685 39.0 39.0 39.0 37.0 39.0 12-13 38.12878504097751 39.0 39.0 39.0 37.0 39.0 14-15 39.63180634744536 41.0 40.0 41.0 37.0 41.0 16-17 39.60698057258476 41.0 40.0 41.0 37.0 41.0 18-19 39.61933335003185 41.0 40.0 41.0 37.0 41.0 20-21 39.61233693846937 41.0 40.0 41.0 37.0 41.0 22-23 39.553382138677314 41.0 40.0 41.0 37.0 41.0 24-25 39.487322999737 41.0 39.0 41.0 36.5 41.0 26-27 39.435801692483906 41.0 39.0 41.0 36.5 41.0 28-29 39.26940234174146 41.0 39.0 41.0 36.0 41.0 30-31 39.18385741528803 41.0 39.0 41.0 36.0 41.0 32-33 39.075928694569924 41.0 39.0 41.0 35.0 41.0 34-35 38.97858496739079 40.0 39.0 41.0 35.0 41.0 36-37 39.06968463599708 40.5 39.0 41.0 35.0 41.0 38-39 39.094067705354924 41.0 39.0 41.0 35.0 41.0 40-41 39.08685818242015 41.0 39.0 41.0 35.0 41.0 42-43 39.04456351743416 40.5 39.0 41.0 35.0 41.0 44-45 38.976351322941056 40.0 39.0 41.0 35.0 41.0 46-47 38.888460093056054 40.0 38.0 41.0 35.0 41.0 48-49 38.81186376393822 40.0 38.0 41.0 35.0 41.0 50-51 38.721721442301956 40.0 38.0 41.0 35.0 41.0 52-53 38.616727113174235 40.0 38.0 41.0 35.0 41.0 54-55 38.4958399521076 40.0 38.0 41.0 34.5 41.0 56-57 38.32380255954405 40.0 37.0 41.0 34.0 41.0 58-59 38.16372349537308 40.0 37.0 41.0 34.0 41.0 60-61 37.97530976566376 39.5 36.5 41.0 34.0 41.0 62-63 37.72699891294706 39.0 36.0 41.0 34.0 41.0 64-65 37.43141295159583 39.0 35.5 40.0 33.0 41.0 66-67 37.11043005940396 38.0 35.0 40.0 33.0 41.0 68-69 36.802071090467464 37.5 35.0 40.0 33.0 41.0 70-71 36.47894210337992 37.0 35.0 39.5 32.5 41.0 72-73 36.141519604013574 36.5 35.0 39.0 32.0 40.5 74-75 35.775023100410266 36.0 35.0 39.0 32.0 40.0 76-77 34.83992957355921 35.0 34.0 37.0 30.5 39.0 78-79 35.07724158257901 35.0 34.0 37.0 31.0 39.0 80-81 34.897384376518225 35.0 34.0 37.0 31.0 39.0 82-83 34.628692430981914 35.0 34.0 36.0 31.0 38.5 84-85 34.37585999972656 35.0 34.0 36.0 31.0 37.0 86-87 34.122480342221536 35.0 34.0 35.5 31.0 37.0 88-89 33.817830313462984 35.0 34.0 35.0 31.0 36.5 90-91 33.7368168463297 35.0 34.0 35.0 31.0 36.0 92-93 33.64739945446872 35.0 34.0 35.0 31.0 36.0 94-95 33.538888997711595 35.0 33.5 35.0 30.0 35.5 96-97 33.502870382665684 35.0 33.0 35.0 30.0 35.0 98-99 33.50445267347597 34.5 33.0 35.0 30.0 35.0 100-101 32.42731681601345 33.5 31.0 34.5 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 12.0 20 37.0 21 170.0 22 894.0 23 3141.0 24 8054.0 25 16720.0 26 29977.0 27 47293.0 28 67415.0 29 90839.0 30 117948.0 31 148694.0 32 189149.0 33 250042.0 34 366151.0 35 557262.0 36 1044931.0 37 2461934.0 38 3508684.0 39 1659920.0 40 90359.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.37999126423221 21.163307448743033 15.359594297134683 24.097106989890076 2 13.70830815140268 21.66583889180867 41.423430012558285 23.202422944230367 3 16.784119214711513 26.80423812322086 31.342503262779246 25.06913939928838 4 11.900147697517285 18.715491278116374 39.310945676883165 30.073415347483174 5 12.957051768430105 37.990458200026566 35.70831391426189 13.344176117281433 6 29.24188507962382 38.567992642141974 18.864924316279826 13.32519796195438 7 25.91964782247479 33.12168421700428 23.367897404261164 17.59077055625977 8 24.430022216539303 36.45848362784961 21.264498397973814 17.846995757637277 9 25.46310111866246 16.880419114967204 21.51824575113243 36.1382340152379 10-11 23.83986641071435 27.06078476669368 29.07402877470059 20.025320047891384 12-13 24.840259419959065 24.693612637665463 29.133022196742907 21.333105745632565 14-15 22.03505489499442 25.989082729372072 26.961560745482206 25.01430163015131 16-17 21.40305290575041 29.16122393917004 27.565916886783636 21.869806268295914 18-19 21.426863381510756 28.19583445047697 29.49107220084457 20.886229967167704 20-21 22.297516206935615 27.28489237553418 29.429210502183402 20.988380915346802 22-23 22.046542990105138 27.149397363383887 29.27323335705739 21.530826289453593 24-25 21.76757151657013 27.367951029639393 29.334871066290123 21.52960638750035 26-27 21.658710069054802 27.51066488207593 29.27997414539909 21.55065090347018 28-29 21.59976017742799 27.5111820761088 29.324472739972883 21.564585006490326 30-31 21.8993100752403 27.40309566691037 29.1963294861672 21.50126477168213 32-33 21.707638574769273 27.581560021295005 29.074804545738264 21.635996858197455 34-35 21.837667851154574 27.561601202782143 29.122531112149964 21.478199833913322 36-37 21.822977074747673 27.495154698471335 29.081988576288108 21.59987965049288 38-39 21.667665408550974 27.679760653209645 29.10008520009614 21.552488738143243 40-41 21.901066313392658 27.52834597550333 28.95383578597065 21.61675192513336 42-43 21.810640368496237 27.650544424390006 28.69460194481976 21.844213262293998 44-45 21.920503869215953 27.756978548449435 28.509633384886463 21.81288419744815 46-47 22.030438757607804 27.71035789875998 28.20226794856449 22.056935395067722 48-49 21.94396399151771 27.849957822931753 28.163920823657858 22.04215736189268 50-51 22.00060822857268 27.963722714225277 27.992011014568725 22.043658042633318 52-53 22.16209263637257 27.85974490014492 27.872860066836264 22.10530239664624 54-55 22.135413415519118 27.786156484851755 27.91172413680647 22.16670596282266 56-57 22.088336433773925 27.931994394393815 27.868374185668777 22.111294986163475 58-59 22.04640180180731 27.937623498262937 27.923723670174226 22.092251029755527 60-61 22.156334028980133 27.93857036561354 27.879244341231086 22.025851264175238 62-63 22.12297486417401 28.026727162726132 27.84198916406833 22.008308809031526 64-65 22.119171549513872 27.929781434087133 27.814684895442987 22.136362120956008 66-67 22.162580581982386 28.035378600157134 27.599392721875404 22.20264809598508 68-69 22.095112690821118 27.974629312574873 27.719588337792082 22.210669658811923 70-71 22.102013211448433 27.76666513798239 27.797463468965983 22.3338581816032 72-73 22.150475696914548 27.799011979617084 27.692602376973685 22.35790994649468 74-75 22.04296383986838 27.934277011180125 27.64171448193464 22.38104466701685 76-77 22.19690581466187 27.80558196289546 27.673811642878032 22.32370057956463 78-79 22.176440311951037 27.825437851955925 27.573004630673054 22.42511720541998 80-81 22.165858733758586 27.865775361549016 27.527090194411986 22.44127571028042 82-83 22.231084194387453 27.805144640564816 27.64934342208225 22.31442774296548 84-85 22.27699270530883 27.762497685244664 27.609521522720637 22.35098808672587 86-87 22.180842819630282 27.772531383575465 27.698341345781703 22.34828445101255 88-89 22.25459047402531 27.75075110464755 27.647139610345 22.34751881098214 90-91 22.274775215554353 27.790847689155346 27.670859583671092 22.263517511619206 92-93 22.36193202568958 27.66429650244585 27.717021228518483 22.256750243346087 94-95 22.203793892810335 27.666976024924644 27.750959143344378 22.378270938920643 96-97 22.218758950359714 27.68913517362379 27.808775669277825 22.283330206738675 98-99 22.40914099710548 28.28019014410635 27.84762805936889 21.463040799419282 100-101 22.92464839075817 30.961941207096295 25.073207801231884 21.040202600913656 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3377.0 1 2792.5 2 3146.5 3 4249.0 4 5606.0 5 8650.5 6 11282.5 7 13958.0 8 16373.5 9 16775.0 10 15440.0 11 14181.0 12 15765.0 13 21059.5 14 33542.5 15 50404.0 16 63562.5 17 70511.0 18 70879.0 19 66152.0 20 59260.0 21 52604.5 22 49185.0 23 51377.5 24 59520.5 25 73929.5 26 93155.5 27 114779.5 28 139213.5 29 165341.0 30 189590.0 31 213367.0 32 239980.5 33 268486.5 34 293975.5 35 316581.0 36 342934.5 37 364451.5 38 377376.0 39 389497.5 40 402427.5 41 412749.5 42 415839.0 43 420227.0 44 426660.0 45 430706.0 46 430043.0 47 424413.0 48 419746.0 49 416373.5 50 409310.5 51 396635.5 52 379468.0 53 358529.5 54 336532.0 55 314340.5 56 288970.0 57 260911.0 58 233242.5 59 203823.0 60 173167.0 61 142525.0 62 112796.0 63 86737.5 64 65103.5 65 48901.5 66 37490.5 67 28945.0 68 22338.5 69 16599.5 70 12030.0 71 8708.5 72 6105.5 73 4171.5 74 2768.5 75 1774.0 76 1122.5 77 695.5 78 444.5 79 273.5 80 173.5 81 110.5 82 76.0 83 55.0 84 38.5 85 27.5 86 22.0 87 19.5 88 13.0 89 8.5 90 6.5 91 4.5 92 3.5 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 2.8143573879273636E-5 2 0.004962650194045251 3 2.8143573879273636E-5 4 2.8143573879273636E-5 5 2.8143573879273636E-5 6 2.8143573879273636E-5 7 2.8143573879273636E-5 8 9.381191293091212E-6 9 2.0638620844800668E-4 10-11 8.396166207316635E-4 12-13 0.0 14-15 2.8143573879273636E-5 16-17 0.0013415103549120435 18-19 9.381191293091212E-6 20-21 4.690694216177022E-6 22-23 6.895752315084655E-4 24-25 0.0025898252989242513 26-27 0.007217816236088105 28-29 0.3643621010644853 30-31 0.33418248490706154 32-33 0.3331013353392628 34-35 0.18612542329411202 36-37 0.048334728668565585 38-39 0.04680186686545654 40-41 0.026616179286583674 42-43 0.02603240229183759 44-45 0.014357633432841875 46-47 0.009795453874671109 48-49 0.009573583914428481 50-51 0.008180652495869398 52-53 0.00700471789244678 54-55 8.764486179704681E-4 56-57 0.003960694295839925 58-59 0.002978815904618211 60-61 0.005977707644218336 62-63 0.0015864099584803311 64-65 1.5951633795578004E-4 66-67 7.086794006333231E-4 68-69 0.001643194385069209 70-71 0.004087282661073043 72-73 0.0021694314927293607 74-75 0.0014030372682473102 76-77 5.47816347562703E-4 78-79 1.5984348126314713E-4 80-81 0.0012066884721239663 82-83 0.0013665562228386001 84-85 5.906871321643556E-6 86-87 0.0038611757877979077 88-89 0.0016463291550669564 90-91 0.005349423811230122 92-93 0.013475047262250062 94-95 0.001491774821394731 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 126.0 20-21 526.0 22-23 1186.0 24-25 2775.0 26-27 3954.0 28-29 7131.0 30-31 20532.0 32-33 27921.0 34-35 41282.0 36-37 56302.0 38-39 64306.0 40-41 70855.0 42-43 85074.0 44-45 103623.0 46-47 102472.0 48-49 89079.0 50-51 78455.0 52-53 72503.0 54-55 77965.0 56-57 81342.0 58-59 82702.0 60-61 82744.0 62-63 81814.0 64-65 88552.0 66-67 93056.0 68-69 94115.0 70-71 92236.0 72-73 89462.0 74-75 91297.0 76-77 93364.0 78-79 98092.0 80-81 99010.0 82-83 96699.0 84-85 98409.0 86-87 103039.0 88-89 108673.0 90-91 116755.0 92-93 119226.0 94-95 131866.0 96-97 196253.0 98-99 889490.0 100-101 6725364.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.39626442707977 #Duplication Level Percentage of deduplicated Percentage of total 1 89.45511580828739 75.49677608111266 2 7.3117109123422095 12.341621751447954 3 1.7766359278364257 4.498243066689996 4 0.6685912481354614 2.2570641508508684 5 0.2925241135970821 1.234397122121823 6 0.16823267723009427 0.8518925707671959 7 0.09690046407672351 0.5724626032528131 8 0.05749327078508983 0.3881773827164913 9 0.03703215643366068 0.2812838100012189 >10 0.13193009615158863 1.718886229862511 >50 0.003020556542962149 0.17167225537430042 >100 6.806412967551961E-4 0.09178398615407013 >500 9.437759886870267E-5 0.053445736302370345 >1k 3.774968574710909E-5 0.04229325334569482 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 9.381191293091212E-6 0.0 3 0.0 0.0 0.0 9.381191293091212E-6 0.0 4 0.0 4.6905956465456064E-5 0.0 9.381191293091212E-6 0.0 5 0.0 4.6905956465456064E-5 0.0 9.381191293091212E-6 0.0 6 2.8143573879273636E-5 4.6905956465456064E-5 0.0 9.381191293091212E-6 0.0 7 2.8143573879273636E-5 4.6905956465456064E-5 0.0 9.381191293091212E-6 0.0 8 2.8143573879273636E-5 4.6905956465456064E-5 0.0 9.381191293091212E-6 0.0 9 2.8143573879273636E-5 9.381191293091213E-5 0.0 1.8762382586182425E-5 0.0 10-11 2.8143573879273636E-5 9.381191293091213E-5 0.0 4.6905956465456064E-5 1.8762382586182425E-5 12-13 2.8143573879273636E-5 9.381191293091213E-5 0.0 5.628714775854727E-5 2.345297823272803E-5 14-15 2.8143573879273636E-5 1.3602727374982258E-4 0.0 7.50495303447297E-5 3.752476517236485E-5 16-17 4.6905956465456064E-5 1.500990606894594E-4 0.0 8.912131728436652E-5 4.6905956465456064E-5 18-19 4.6905956465456064E-5 1.54789656336005E-4 0.0 1.2664608245673136E-4 5.628714775854727E-5 20-21 5.1596552112001664E-5 1.594802519825506E-4 0.0 1.7824263456873301E-4 7.97401259912753E-5 22-23 5.628714775854727E-5 1.594802519825506E-4 0.0 4.456065864218326E-4 8.912131728436652E-5 24-25 5.628714775854727E-5 1.594802519825506E-4 0.0 0.0013884163113774995 9.381191293091213E-5 26-27 5.628714775854727E-5 1.594802519825506E-4 0.0 0.004690595646545606 1.0319310422400333E-4 28-29 5.628714775854727E-5 1.594802519825506E-4 0.0 0.02039940046682684 1.0319310422400333E-4 30-31 5.628714775854727E-5 1.7824263456873304E-4 0.0 0.027988784222937633 1.0319310422400333E-4 32-33 5.628714775854727E-5 1.8293323021527865E-4 0.0 0.030502943489486074 1.0319310422400333E-4 34-35 5.628714775854727E-5 2.0638620844800666E-4 0.0 0.03412877392426583 1.2195548681018576E-4 36-37 5.628714775854727E-5 2.2514859103418909E-4 0.0 0.039199307818181636 1.2195548681018576E-4 38-39 5.628714775854727E-5 2.2514859103418909E-4 0.0 0.04800824644239428 1.3133667810327697E-4 40-41 6.566833905163849E-5 2.4391097362037151E-4 0.0 0.06916283280831495 1.3133667810327697E-4 42-43 7.50495303447297E-5 2.5798276056000834E-4 0.0 0.07757307080257123 1.3133667810327697E-4 44-45 8.912131728436651E-5 2.86126334439282E-4 0.0 0.08962790161419344 1.3133667810327697E-4 46-47 1.0319310422400333E-4 3.001981213789188E-4 0.0 0.10368092617124408 1.3133667810327697E-4 48-49 1.0319310422400333E-4 3.048887170254644E-4 0.0 0.11623296012140012 1.4071786939636819E-4 50-51 1.1257429551709454E-4 3.0957931267201E-4 0.0 0.12771084766849722 1.500990606894594E-4 52-53 1.1257429551709454E-4 3.0957931267201E-4 0.0 0.1453474872995087 1.594802519825506E-4 54-55 1.1257429551709454E-4 3.0957931267201E-4 0.0 0.18720167225363515 1.6886144327564183E-4 56-57 1.1257429551709454E-4 3.142699083185556E-4 0.0 0.23039736756267362 1.8293323021527865E-4 58-59 1.1257429551709454E-4 3.189605039651012E-4 0.0 0.2619228609031067 2.0169561280146105E-4 60-61 1.1257429551709454E-4 3.2834169525819244E-4 0.0 0.2827631773607088 2.0638620844800666E-4 62-63 1.2195548681018576E-4 3.4241348219782926E-4 0.0 0.29488836710702915 2.1107680409455226E-4 64-65 1.2664608245673136E-4 4.0339122560292215E-4 0.0 0.30389900134404324 2.1576739974109787E-4 66-67 1.4071786939636819E-4 4.127724168960133E-4 0.0 0.31003899104537147 2.2514859103418909E-4 68-69 1.4071786939636819E-4 4.2215360818910453E-4 0.0 0.31584594845579494 2.4391097362037151E-4 70-71 1.4071786939636819E-4 4.3622539512874135E-4 0.0 0.3211650839189777 2.5329216491346273E-4 72-73 1.7355203892218743E-4 4.4091599077528696E-4 0.0 0.32541945417039453 2.6267335620655394E-4 74-75 1.8762382586182426E-4 4.4560658642183256E-4 0.0 0.3288951855444848 2.6736395185309955E-4 76-77 1.8762382586182426E-4 4.549877777149238E-4 0.0 0.3319393821190929 2.7674514314619076E-4 78-79 1.8762382586182426E-4 4.596783733614694E-4 0.0 0.3350117222675803 2.8143573879273637E-4 80-81 1.8762382586182426E-4 4.596783733614694E-4 0.0 0.3362312771356821 2.86126334439282E-4 82-83 1.8762382586182426E-4 4.596783733614694E-4 0.0 0.33671440848727635 2.908169300858276E-4 84-85 1.8762382586182426E-4 4.596783733614694E-4 0.0 0.3370333689912414 2.955075257323732E-4 86-87 1.8762382586182426E-4 4.596783733614694E-4 0.0 0.33717877745628433 3.048887170254644E-4 88-89 1.8762382586182426E-4 5.441090949992903E-4 0.0 0.33720692103016364 3.142699083185556E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14425 0.0 55.071056 1 GTATCAA 27350 0.0 38.602676 1 TCAACGC 34390 0.0 30.189411 4 ATCAACG 34760 0.0 29.84335 3 CAACGCA 35225 0.0 29.486038 5 TATCAAC 35500 0.0 29.343351 2 AACGCAG 36100 0.0 28.80684 6 ACGCAGA 41475 0.0 25.063288 7 CGCAGAG 42460 0.0 24.49192 8 TGGTATC 6050 0.0 22.59024 2 GTGGTAT 6430 0.0 22.251541 1 GCAGAGT 48720 0.0 21.34497 9 GTACATG 34160 0.0 20.967249 1 TACATGG 34505 0.0 20.163471 2 GAGTACT 29115 0.0 20.066946 12-13 ACATGGG 34500 0.0 19.756662 3 AGAGTAC 44570 0.0 19.42796 10-11 CAGAGTA 47945 0.0 18.942226 10-11 GTACTTT 32230 0.0 18.107916 14-15 CATGGGG 24495 0.0 18.027891 4 >>END_MODULE