##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139634_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10601866 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.862327160143316 34.0 31.0 34.0 31.0 34.0 2 33.01110172492276 34.0 31.0 34.0 31.0 34.0 3 33.068364380383606 34.0 33.0 34.0 31.0 34.0 4 36.45068858632999 37.0 37.0 37.0 35.0 37.0 5 36.41156075732329 37.0 37.0 37.0 35.0 37.0 6 36.439268426897684 37.0 37.0 37.0 35.0 37.0 7 36.41452400926403 37.0 37.0 37.0 35.0 37.0 8 36.399980626052056 37.0 37.0 37.0 35.0 37.0 9 38.1817054658114 39.0 39.0 39.0 37.0 39.0 10-11 38.1165741955237 39.0 39.0 39.0 37.0 39.0 12-13 38.09065144758479 39.0 39.0 39.0 37.0 39.0 14-15 39.58422904043496 41.0 40.0 41.0 37.0 41.0 16-17 39.55357005078163 41.0 40.0 41.0 37.0 41.0 18-19 39.55874399846216 41.0 40.0 41.0 37.0 41.0 20-21 39.55006249416563 41.0 40.0 41.0 37.0 41.0 22-23 39.48989612407043 41.0 39.0 41.0 37.0 41.0 24-25 39.421275495730725 41.0 39.0 41.0 36.0 41.0 26-27 39.37089676477822 41.0 39.0 41.0 36.0 41.0 28-29 39.20458319800069 41.0 39.0 41.0 36.0 41.0 30-31 39.11948902673127 40.5 39.0 41.0 36.0 41.0 32-33 39.01436478176669 40.0 39.0 41.0 35.0 41.0 34-35 38.91583450199566 40.0 38.5 41.0 35.0 41.0 36-37 39.00977243342639 40.0 39.0 41.0 35.0 41.0 38-39 39.03904881517116 40.0 39.0 41.0 35.0 41.0 40-41 39.034604060224694 40.0 39.0 41.0 35.0 41.0 42-43 38.99294658587661 40.0 39.0 41.0 35.0 41.0 44-45 38.92444252803051 40.0 38.5 41.0 35.0 41.0 46-47 38.83998340322786 40.0 38.0 41.0 35.0 41.0 48-49 38.76705360798425 40.0 38.0 41.0 35.0 41.0 50-51 38.680079806541045 40.0 38.0 41.0 35.0 41.0 52-53 38.57584168159242 40.0 38.0 41.0 35.0 41.0 54-55 38.4574645930409 40.0 38.0 41.0 34.0 41.0 56-57 38.29030222962406 40.0 37.5 41.0 34.0 41.0 58-59 38.13509587702488 40.0 37.0 41.0 34.0 41.0 60-61 37.94795276383237 39.5 36.5 41.0 34.0 41.0 62-63 37.70254304630181 39.0 36.0 41.0 33.5 41.0 64-65 37.408274446108564 39.0 35.5 40.0 33.0 41.0 66-67 37.08322798078808 38.0 35.0 40.0 33.0 41.0 68-69 36.7761556747524 37.5 35.0 40.0 32.5 41.0 70-71 36.45032334742737 37.0 35.0 39.5 32.0 41.0 72-73 36.10717056899348 36.5 35.0 39.0 32.0 40.5 74-75 35.73924736819296 36.0 35.0 39.0 32.0 40.0 76-77 34.801716684662416 35.0 34.0 37.0 30.5 39.0 78-79 35.04361357104608 35.0 34.0 37.0 31.0 39.0 80-81 34.86237105489117 35.0 34.0 37.0 31.0 39.0 82-83 34.58849779038548 35.0 34.0 36.0 31.0 38.5 84-85 34.332142158531965 35.0 34.0 36.0 31.0 37.0 86-87 34.069991089824725 35.0 34.0 35.5 31.0 37.0 88-89 33.755190136517854 35.0 34.0 35.0 30.0 36.5 90-91 33.67080095155474 35.0 34.0 35.0 30.0 36.0 92-93 33.58238363522038 35.0 33.5 35.0 30.0 36.0 94-95 33.469492960611355 35.0 33.0 35.0 30.0 35.5 96-97 33.43276212241567 35.0 33.0 35.0 30.0 35.0 98-99 33.43512048615107 34.0 33.0 35.0 30.0 35.0 100-101 32.35862833214483 33.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 1.0 15 0.0 16 0.0 17 0.0 18 0.0 19 7.0 20 32.0 21 185.0 22 985.0 23 3309.0 24 8224.0 25 17303.0 26 30684.0 27 48472.0 28 70006.0 29 93803.0 30 121427.0 31 153812.0 32 195698.0 33 257959.0 34 371707.0 35 568083.0 36 1066032.0 37 2473687.0 38 3438573.0 39 1602756.0 40 79120.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.65216167155496 21.58250458763623 15.413061758473626 24.352271982335182 2 13.626256867517702 21.990488763890205 41.28805786731433 23.095196501277762 3 16.66103086579578 26.824148392759202 31.500250191829455 25.014570549615563 4 11.849040116817203 18.95555526420215 39.1898763453178 30.005528273662847 5 12.899334220913019 37.915083808367676 35.89247740845597 13.29310456226334 6 29.183186165830254 38.5767504113663 18.94500637387856 13.295057048924882 7 25.68120797614382 32.98442302368498 23.623551139351427 17.710817860819773 8 24.091372216928605 36.71651763944197 21.447601771235366 17.744508372394066 9 25.117656452308612 16.923258894375042 21.71927498252426 36.239809670792084 10-11 23.60645675993521 27.145949343639014 29.32298306662989 19.92461082979588 12-13 24.587681074256174 24.820126004233593 29.298578193687792 21.29361472782244 14-15 21.814964716819386 26.232055691713473 27.052925454763173 24.90005413670397 16-17 21.26622316238577 29.250073679210832 27.741952553559447 21.741750604843947 18-19 21.314282911544336 28.31970129783769 29.593906355155436 20.772109435462536 20-21 22.09623158582519 27.44200476127076 29.542526273084825 20.91923737981923 22-23 21.836827361739587 27.361914102232305 29.378209301539105 21.423049234489003 24-25 21.61203462209736 27.52531181498249 29.45490326002468 21.40775030289547 26-27 21.559952812356826 27.66671695497661 29.375341327774656 21.397988904891907 28-29 21.497381314875483 27.64052447803258 29.436833217460073 21.425260989631862 30-31 21.718468578046757 27.58820114625143 29.314776620765205 21.37855365493661 32-33 21.556353984450947 27.7430821672557 29.209288293021274 21.491275555272086 34-35 21.675738198102252 27.71257674896468 29.237455756199132 21.37422929673394 36-37 21.66951239531386 27.640952643824324 29.18752803320134 21.502006927660478 38-39 21.55336752943026 27.794575666588678 29.207429076350284 21.444627727630774 40-41 21.714392849564355 27.681988835326777 29.097361374424313 21.506256940684555 42-43 21.67689333899922 27.791666713351937 28.86198539902339 21.669454548625453 44-45 21.764344315876038 27.8737879500099 28.66975836361431 21.692109370499754 46-47 21.854640472446327 27.877976528660575 28.34472347793473 21.92265952095837 48-49 21.82406538110092 27.987080438924387 28.288851867607605 21.900002312367086 50-51 21.842681837396924 28.096185420096454 28.160065872161976 21.901066870344643 52-53 21.99695203893214 28.01704744760036 28.03749842792651 21.948502085540994 54-55 21.96915409561661 27.95079046779197 28.063608000898594 22.016447435692825 56-57 21.966248063295836 28.042144796307888 28.02533317321277 21.966273967183504 58-59 21.900573658328177 28.092515645476528 28.02186716717003 21.985043529025265 60-61 22.00460810666846 28.099166278387987 27.974530535098186 21.921695079845367 62-63 21.965259520435666 28.176158056308715 27.963421525301996 21.895160897953623 64-65 21.96212410509644 28.083048252124843 27.951029087457226 22.00379855532149 66-67 22.045098971771875 28.155238030176317 27.745451765776767 22.05421123227504 68-69 21.967976111247328 28.13235030123647 27.804421783600127 22.095251803916074 70-71 21.960601814868184 27.93954642397637 27.9306703431891 22.16918141796635 72-73 22.022407646612756 27.95220732950107 27.830226256315672 22.195158767570497 74-75 21.933716029507444 28.06432026850803 27.795879950094882 22.20608375188964 76-77 22.08516497127733 27.95149771982064 27.781431408839946 22.181905900062084 78-79 22.04058100242363 27.95893489420555 27.707206904512798 22.29327719885802 80-81 22.01735641118058 27.998694912021964 27.697933680641846 22.286014996155608 82-83 22.103030983263956 27.9429667809252 27.783970023817684 22.17003221199316 84-85 22.122564737159188 27.919695388489725 27.750875456446916 22.206864417904175 86-87 22.04337856301679 27.8930703498953 27.85631253623606 22.207238550851848 88-89 22.174486626201823 27.883022477166758 27.747256774237684 22.195234122393735 90-91 22.13147746521021 27.931622496693336 27.800699206759255 22.1362008313372 92-93 22.210722550340098 27.820121793229397 27.824280016514802 22.144875639915703 94-95 22.06410399939526 27.789575883765533 27.916015601950594 22.23030451488861 96-97 22.055578156925222 27.833592157797316 27.949905696551664 22.160923988725795 98-99 22.28453234256893 28.38184662481541 28.030815290317797 21.302805742297863 100-101 22.778423323477636 31.12007585386369 25.246595647160554 20.854905175498125 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 4439.0 1 3639.5 2 3745.5 3 4820.0 4 6214.5 5 9166.5 6 11641.5 7 14077.0 8 15946.5 9 15984.0 10 14752.0 11 13650.5 12 15326.5 13 20968.5 14 34035.0 15 51176.0 16 64118.5 17 70287.5 18 70340.5 19 65958.0 20 59470.0 21 53349.5 22 50281.0 23 53648.5 24 63539.0 25 79324.5 26 99459.0 27 121350.0 28 144770.5 29 168952.0 30 191171.0 31 214001.0 32 240149.0 33 267857.0 34 293921.0 35 316673.0 36 341965.5 37 363027.0 38 377546.0 39 392326.5 40 406301.0 41 418627.0 42 425422.0 43 430563.5 44 435393.5 45 439468.5 46 440177.0 47 435396.0 48 429312.5 49 421923.0 50 412992.0 51 398414.0 52 377960.5 53 355564.0 54 330396.0 55 304451.5 56 278719.5 57 250512.0 58 221349.5 59 190682.0 60 158881.0 61 128984.0 62 101992.5 63 78146.5 64 58057.0 65 43153.5 66 32497.5 67 24895.0 68 19057.5 69 13931.5 70 9939.5 71 7072.0 72 4878.0 73 3210.0 74 2111.0 75 1351.0 76 861.0 77 545.5 78 358.0 79 240.5 80 158.0 81 100.0 82 66.5 83 41.0 84 29.5 85 25.5 86 21.0 87 18.0 88 14.0 89 9.0 90 5.5 91 2.5 92 1.0 93 1.0 94 1.5 95 2.0 96 2.0 97 1.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 9.43230182309416E-6 2 0.004810473929778022 3 9.43230182309416E-6 4 2.8296905469282484E-5 5 9.43230182309416E-6 6 9.43230182309416E-6 7 9.43230182309416E-6 8 0.0 9 2.35807545577354E-4 10-11 7.357195422013446E-4 12-13 0.0 14-15 1.4148452734641242E-5 16-17 0.0015516136498989895 18-19 9.43230182309416E-6 20-21 9.432554055019616E-6 22-23 7.49942763802272E-4 24-25 0.0026700036365826917 26-27 0.007318560567954275 28-29 0.36643658757875036 30-31 0.33726564163696615 32-33 0.33538479917008546 34-35 0.18774593867362 36-37 0.047662669746344755 38-39 0.046266278208597376 40-41 0.025923221046754718 42-43 0.025607821713845107 44-45 0.013892618950328358 46-47 0.009519575290877153 48-49 0.009328853677983319 50-51 0.007903467993180957 52-53 0.006853923611185481 54-55 7.039484985112516E-4 56-57 0.00376110302479717 58-59 0.002816453943401294 60-61 0.00592991442052929 62-63 0.0014994701606235626 64-65 9.1203013347561E-5 66-67 7.151068876224153E-4 68-69 0.0016911427193651548 70-71 0.0042636551436271136 72-73 0.0021563397730055755 74-75 0.0015066107200600476 76-77 5.929394706293419E-4 78-79 1.7865687719189656E-4 80-81 0.0011889727671615979 82-83 0.001320436130622258 84-85 0.0 86-87 0.003932581558846378 88-89 0.0016184861657604671 90-91 0.004915030634135519 92-93 0.014068141682013396 94-95 0.001403377610960124 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 158.0 20-21 655.0 22-23 1233.0 24-25 2666.0 26-27 3975.0 28-29 8113.0 30-31 22643.0 32-33 30163.0 34-35 44437.0 36-37 60223.0 38-39 67844.0 40-41 73313.0 42-43 86497.0 44-45 104676.0 46-47 102906.0 48-49 90172.0 50-51 79621.0 52-53 72585.0 54-55 78071.0 56-57 82318.0 58-59 83055.0 60-61 83173.0 62-63 81997.0 64-65 88639.0 66-67 93349.0 68-69 94445.0 70-71 92237.0 72-73 89487.0 74-75 90612.0 76-77 92686.0 78-79 96595.0 80-81 97536.0 82-83 94561.0 84-85 96427.0 86-87 101747.0 88-89 107409.0 90-91 115731.0 92-93 118779.0 94-95 131930.0 96-97 197923.0 98-99 884328.0 100-101 6656951.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.5461921781808 #Duplication Level Percentage of deduplicated Percentage of total 1 89.91578695654314 76.91953190836801 2 7.112158323113424 12.168361254214181 3 1.6607910745179815 4.262230572855679 4 0.6315303983615201 2.161000832983907 5 0.26781743872153063 1.1455381040770112 6 0.14461322958882178 0.7422666677947638 7 0.08389467669303408 0.5023809094576047 8 0.04639642120234843 0.3175229731644737 9 0.03263656290190634 0.2512740313837589 >10 0.10191637501051384 1.3206244151733018 >50 0.002118068336942265 0.12023914068661334 >100 2.701637753721728E-4 0.04291077671206167 >500 7.031123345632578E-5 0.04611841312861808 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.886460364618832E-5 0.0 0.0 0.0 3 0.0 1.886460364618832E-5 0.0 9.43230182309416E-6 0.0 4 0.0 3.772920729237664E-5 0.0 1.886460364618832E-5 0.0 5 0.0 4.716150911547081E-5 0.0 2.8296905469282484E-5 0.0 6 9.43230182309416E-6 4.716150911547081E-5 0.0 2.8296905469282484E-5 0.0 7 9.43230182309416E-6 4.716150911547081E-5 0.0 2.8296905469282484E-5 0.0 8 1.886460364618832E-5 7.545841458475328E-5 0.0 3.772920729237664E-5 0.0 9 1.886460364618832E-5 1.414845273464124E-4 0.0 5.659381093856497E-5 0.0 10-11 2.35807545577354E-5 1.4620067825795948E-4 0.0 7.545841458475328E-5 0.0 12-13 3.772920729237664E-5 1.5091682916950656E-4 0.0 1.0375532005403578E-4 0.0 14-15 4.716150911547081E-5 2.2637524375425985E-4 0.0 1.3205222552331824E-4 1.886460364618832E-5 16-17 9.90391691424887E-5 2.641044510466365E-4 0.0 1.7921373463878904E-4 3.772920729237664E-5 18-19 1.0847147096558286E-4 2.9240135651591897E-4 0.0 2.546721492235423E-4 4.244535820392372E-5 20-21 1.1318762187712994E-4 3.2541441289674853E-4 0.0 3.6785977110067225E-4 4.716150911547081E-5 22-23 1.17903772788677E-4 3.678597711006723E-4 0.0 9.809593896017927E-4 4.716150911547081E-5 24-25 1.414845273464124E-4 4.0558897839304894E-4 0.0 0.002815542094193607 4.716150911547081E-5 26-27 1.5091682916950656E-4 4.338858838623314E-4 0.0 0.006861999576301002 4.716150911547081E-5 28-29 1.5091682916950656E-4 4.338858838623314E-4 0.0 0.026580226537479348 4.716150911547081E-5 30-31 1.6034913099260072E-4 4.857635438893493E-4 0.0 0.036238903604327764 5.187766002701789E-5 32-33 1.6034913099260072E-4 4.904796948008963E-4 0.0 0.03915348486766386 5.659381093856497E-5 34-35 1.6034913099260072E-4 5.470735057394613E-4 0.0 0.04318579389703662 5.659381093856497E-5 36-37 1.6034913099260072E-4 6.083834675895733E-4 0.0 0.04891120110365477 5.659381093856497E-5 38-39 1.6034913099260072E-4 6.225319203242146E-4 0.0 0.0594423660891394 5.659381093856497E-5 40-41 1.6034913099260072E-4 6.838418821743266E-4 0.0 0.08372111098178378 5.659381093856497E-5 42-43 1.6034913099260072E-4 7.121387876436092E-4 0.0 0.09357315023600563 5.659381093856497E-5 44-45 1.650652819041478E-4 8.441910131669274E-4 0.0 0.10743391776504249 5.659381093856497E-5 46-47 1.7449758372724196E-4 9.479463332209633E-4 0.0 0.12398760746457274 5.659381093856497E-5 48-49 1.7921373463878907E-4 9.526624841325103E-4 0.0 0.13814077635012553 5.659381093856497E-5 50-51 1.7921373463878907E-4 0.001056417804186546 0.0 0.15126110818604951 5.659381093856497E-5 52-53 1.7921373463878907E-4 0.0010752824078327345 0.0 0.17088029597808538 5.659381093856497E-5 54-55 1.8864603646188323E-4 0.0010988631623904698 0.0 0.21468390564453466 5.659381093856497E-5 56-57 1.8864603646188323E-4 0.0011035793133020169 0.0 0.2597797406607478 6.602611276165912E-5 58-59 1.8864603646188323E-4 0.0011082954642135639 0.0 0.2935190842819556 7.545841458475328E-5 60-61 1.980783382849774E-4 0.001117727766036658 0.0 0.3156755612644038 7.545841458475328E-5 62-63 1.980783382849774E-4 0.0011318762187712992 0.0 0.3294655865297675 7.545841458475328E-5 64-65 1.980783382849774E-4 0.0012544961424715234 0.0 0.3386149192981688 7.545841458475328E-5 66-67 2.0279448919652447E-4 0.0012827930479408058 0.0 0.34449124333395653 7.545841458475328E-5 68-69 2.0751064010807155E-4 0.0013016576515869943 0.0 0.34986765537312015 8.017456549630036E-5 70-71 2.0751064010807155E-4 0.0013158061043216354 0.0 0.3553478227323379 8.489071640784744E-5 72-73 2.0751064010807155E-4 0.0013252384061447297 0.0 0.35938956406353373 9.432301823094162E-5 74-75 2.0751064010807155E-4 0.001353535311614012 0.0 0.36298327105813255 9.432301823094162E-5 76-77 2.0751064010807155E-4 0.0014195614243756713 0.0 0.36616667292342686 9.432301823094162E-5 78-79 2.0751064010807155E-4 0.001462006782579595 0.0 0.36896806656488584 9.432301823094162E-5 80-81 2.0751064010807155E-4 0.001462006782579595 0.0 0.3701046589345687 9.90391691424887E-5 82-83 2.0751064010807155E-4 0.0014667229334911422 0.0 0.3706234355348389 1.0375532005403578E-4 84-85 2.0751064010807155E-4 0.0014714390844026892 0.0 0.37098186300411645 1.1318762187712992E-4 86-87 2.0751064010807155E-4 0.0014950198389604246 0.0 0.37108090217325895 1.2261992370022408E-4 88-89 2.0751064010807155E-4 0.0015468974989874425 0.0 0.37109505062599357 1.2261992370022408E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14530 0.0 53.114944 1 GTATCAA 26105 0.0 35.77386 1 TCAACGC 32730 0.0 27.775818 4 ATCAACG 32810 0.0 27.734098 3 CAACGCA 33595 0.0 27.048206 5 TATCAAC 34030 0.0 26.866058 2 AACGCAG 34605 0.0 26.28342 6 TGGTATC 6395 0.0 25.217093 2 GTGGTAT 6925 0.0 24.026394 1 ACGCAGA 39710 0.0 22.87227 7 CGCAGAG 40495 0.0 22.449959 8 GTACATG 31635 0.0 19.89152 1 TACATGG 31290 0.0 19.49729 2 GCAGAGT 46795 0.0 19.299892 9 GAGTACT 27935 0.0 19.265137 12-13 ACATGGG 31625 0.0 18.737047 3 AGAGTAC 42350 0.0 18.409351 10-11 CAGAGTA 45985 0.0 18.030298 10-11 GTACTTT 31535 0.0 16.99857 14-15 CATGGGG 21715 0.0 16.915028 4 >>END_MODULE