##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139633_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9389857 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.902735259972545 34.0 31.0 34.0 31.0 34.0 2 33.03850282277994 34.0 33.0 34.0 31.0 34.0 3 33.09742874678496 34.0 33.0 34.0 31.0 34.0 4 36.46263462798209 37.0 37.0 37.0 35.0 37.0 5 36.42628497963281 37.0 37.0 37.0 35.0 37.0 6 36.45524729503335 37.0 37.0 37.0 35.0 37.0 7 36.429744563735106 37.0 37.0 37.0 35.0 37.0 8 36.417099216739935 37.0 37.0 37.0 35.0 37.0 9 38.207127222491245 39.0 39.0 39.0 37.0 39.0 10-11 38.147863220920186 39.0 39.0 39.0 37.0 39.0 12-13 38.119839205218994 39.0 39.0 39.0 37.0 39.0 14-15 39.62064448904813 41.0 40.0 41.0 37.0 41.0 16-17 39.594124117119144 41.0 40.0 41.0 37.0 41.0 18-19 39.606435699712996 41.0 40.0 41.0 37.0 41.0 20-21 39.6024273166487 41.0 40.0 41.0 37.0 41.0 22-23 39.544214952672235 41.0 40.0 41.0 37.0 41.0 24-25 39.47933058530219 41.0 39.0 41.0 36.5 41.0 26-27 39.42960447838708 41.0 39.0 41.0 36.5 41.0 28-29 39.257811917546796 41.0 39.0 41.0 36.0 41.0 30-31 39.17084686435623 41.0 39.0 41.0 36.0 41.0 32-33 39.063727030937144 41.0 39.0 41.0 35.0 41.0 34-35 38.96731403947019 40.0 39.0 41.0 35.0 41.0 36-37 39.06229027381299 40.5 39.0 41.0 35.0 41.0 38-39 39.08846539271235 41.0 39.0 41.0 35.0 41.0 40-41 39.08226866328522 41.0 39.0 41.0 35.0 41.0 42-43 39.03984651633894 40.5 39.0 41.0 35.0 41.0 44-45 38.97391830891164 40.0 39.0 41.0 35.0 41.0 46-47 38.88898437156497 40.0 38.0 41.0 35.0 41.0 48-49 38.81274863252041 40.0 38.0 41.0 35.0 41.0 50-51 38.723575480782515 40.0 38.0 41.0 35.0 41.0 52-53 38.61838901121657 40.0 38.0 41.0 35.0 41.0 54-55 38.498661990549635 40.0 38.0 41.0 34.5 41.0 56-57 38.33048224697093 40.0 37.5 41.0 34.0 41.0 58-59 38.1722595456184 40.0 37.0 41.0 34.0 41.0 60-61 37.985211059289824 39.5 36.5 41.0 34.0 41.0 62-63 37.73500439895042 39.0 36.0 41.0 34.0 41.0 64-65 37.43905716001426 39.0 35.5 40.0 33.0 41.0 66-67 37.11979277253621 38.0 35.0 40.0 33.0 41.0 68-69 36.8124314086762 37.5 35.0 40.0 33.0 41.0 70-71 36.485442445443226 37.0 35.0 39.5 32.5 41.0 72-73 36.14411526898934 36.5 35.0 39.0 32.0 40.5 74-75 35.779421175030095 36.0 35.0 39.0 32.0 40.0 76-77 34.838426247603756 35.0 34.0 37.0 30.5 39.0 78-79 35.074681656707185 35.0 34.0 37.0 31.0 39.0 80-81 34.889934896151644 35.0 34.0 37.0 31.0 39.0 82-83 34.61397627083288 35.0 34.0 36.0 31.0 38.5 84-85 34.36409595623836 35.0 34.0 36.0 31.0 37.0 86-87 34.116750401088716 35.0 34.0 35.5 31.0 37.0 88-89 33.81822439420668 35.0 34.0 35.0 31.0 36.5 90-91 33.73351487273341 35.0 34.0 35.0 31.0 36.0 92-93 33.64817566787077 35.0 34.0 35.0 31.0 36.0 94-95 33.53893314263101 35.0 33.5 35.0 30.0 35.5 96-97 33.499768609070486 35.0 33.0 35.0 30.0 35.0 98-99 33.50810791900816 34.5 33.0 35.0 30.0 35.0 100-101 32.450338806475585 33.5 31.5 34.5 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 3.0 20 28.0 21 178.0 22 824.0 23 2725.0 24 7149.0 25 15072.0 26 26528.0 27 41764.0 28 60112.0 29 80818.0 30 104273.0 31 132222.0 32 167748.0 33 221221.0 34 321508.0 35 490924.0 36 920903.0 37 2176363.0 38 3111714.0 39 1435560.0 40 72220.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.36132134095787 21.180422913878864 15.39256995981301 24.06568578535025 2 13.788498460333171 21.682958673793735 41.27915305064696 23.249389815226134 3 16.747468411386542 26.766217369703792 31.428227592438862 25.058086626470804 4 11.921387497464018 18.795689603300584 39.25219292523687 30.030729973998533 5 12.94887940229109 37.941427210537334 35.77167059555233 13.338022791619252 6 29.313977691881295 38.497122692522936 18.916873583244893 13.272026032350873 7 25.867992636734005 33.15017111552841 23.445260869310548 17.536575378427035 8 24.43944566993938 36.31560097241098 21.365373295887256 17.87958006176239 9 25.45488818493616 16.820764156132668 21.58064545330136 36.143702205629815 10-11 23.79100112430833 27.00754853179092 29.17451785043153 20.026932493469225 12-13 24.76268807927533 24.706558363987867 29.164182159536615 21.36657139720019 14-15 22.018379303068084 26.033994878834932 26.982635675277432 24.964990142819556 16-17 21.391287437540644 29.12082657327077 27.621503804272468 21.86638218491612 18-19 21.40481479110917 28.190365412380615 29.532159009450304 20.87266078705991 20-21 22.264755442532813 27.306490739701378 29.44879545082279 20.979958366943023 22-23 22.01091374568637 27.170981358955125 29.286124683012876 21.531980212345626 24-25 21.72171474267643 27.377780850434423 29.360601338317142 21.539903068572002 26-27 21.704120489732087 27.51930676217917 29.27481036619513 21.501762381893613 28-29 21.607015138083263 27.52592155314446 29.315496830637827 21.551566478134447 30-31 21.884045015034097 27.42733073994948 29.186927589560874 21.501696655455554 32-33 21.709903793048845 27.56246650093615 29.117177096918024 21.610452609096985 34-35 21.78015292191527 27.59038523268011 29.145149570956384 21.484312274448232 36-37 21.8313598177549 27.488693322699064 29.052634403147998 21.627312456398034 38-39 21.688326028303617 27.675687237886077 29.08773653304796 21.54825020076235 40-41 21.904085548382955 27.55275846451715 28.920403856863462 21.62275213023643 42-43 21.84671428619269 27.640029234672696 28.664972089210224 21.84828438992439 44-45 21.891451504097954 27.772791872099887 28.47071281958689 21.86504380421526 46-47 22.03377766437045 27.72623992868768 28.159273133626385 22.080709273315488 48-49 21.985063004149037 27.84466360678268 28.123862009102794 22.046411379965484 50-51 22.01708716579393 27.977298655606564 27.950493090171573 22.055121088427928 52-53 22.17986984056621 27.90612562856815 27.813694499178986 22.10031003168665 54-55 22.14619764149412 27.80121692185636 27.848990297693238 22.203595138956285 56-57 22.13405440718581 27.96321902501568 27.76959993576762 22.133126632030894 58-59 22.083143041967904 27.974928557251026 27.86573500249534 22.076193398285724 60-61 22.108669350796557 27.859231449042767 27.86042611296399 22.171673087196687 62-63 22.281242541137424 27.926243963037866 27.842266230708674 21.950247265116037 64-65 22.06826113721371 27.854719194976983 27.796585010951176 22.280434656858134 66-67 22.102228044632742 27.89339825816825 27.66449493401857 22.339878763180433 68-69 22.058237098262737 28.05415699699535 27.740819419007188 22.146786485734722 70-71 22.065513722611477 27.839568665180934 27.801698421183758 22.293219191023827 72-73 22.131478262788164 27.889955664771744 27.471256003082424 22.50731006935767 74-75 22.02134438929354 27.98645671891974 27.489161398596863 22.503037493189858 76-77 22.166499485659248 27.696673588532008 27.656687082458077 22.48013984335067 78-79 22.11463658438013 27.674856978089306 27.60984540131888 22.60066103621169 80-81 22.327298851007217 27.69972468646447 27.41960129500954 22.553375167518773 82-83 22.414215278224145 27.850581209805814 27.46145750304819 22.27374600892185 84-85 22.212928177254312 27.6211650848711 27.454736059166905 22.711170678707678 86-87 22.154880201522726 27.784692259405748 27.554334293333277 22.506093245738253 88-89 22.438410378093177 27.534938591426627 27.476048909394528 22.55060212108567 90-91 22.442699948527178 27.748694597469452 27.52818130013833 22.28042415386504 92-93 22.30068495743309 27.674414433144616 27.536020433471165 22.488880175951124 94-95 22.360712488107055 27.462304396614307 27.59598305632491 22.58100005895373 96-97 22.401807721212073 27.687881208977434 27.62196406091971 22.288347008890785 98-99 22.658444535470696 28.08665193134879 27.73138375144912 21.523519781731395 100-101 23.025939244578655 30.8464538334986 24.98830526170415 21.139301660218596 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2686.0 1 2266.0 2 2781.0 3 3883.0 4 5205.5 5 7926.5 6 10171.5 7 12361.0 8 14243.0 9 14567.5 10 13450.0 11 12462.0 12 13949.0 13 18844.5 14 30459.0 15 46145.5 16 58464.0 17 64736.0 18 65069.5 19 60896.5 20 54541.0 21 48226.5 22 44678.0 23 46283.0 24 53588.0 25 66157.5 26 82247.0 27 100667.0 28 121769.5 29 144724.5 30 166053.0 31 186011.0 32 208523.5 33 232451.0 34 254424.0 35 274442.5 36 297013.5 37 315377.5 38 328032.0 39 340249.0 40 351437.5 41 361697.0 42 365653.5 43 369628.5 44 375307.0 45 379549.5 46 381542.5 47 379595.0 48 376481.0 49 373019.5 50 367197.5 51 354760.5 52 338516.5 53 320021.5 54 299300.5 55 278377.5 56 255460.0 57 231144.5 58 207124.5 59 178786.5 60 148208.0 61 120806.5 62 96076.0 63 73969.5 64 54737.5 65 40303.0 66 30248.0 67 23137.5 68 17797.5 69 13130.5 70 9453.5 71 6731.5 72 4686.5 73 3278.0 74 2215.5 75 1377.0 76 883.5 77 560.5 78 360.5 79 234.5 80 159.5 81 112.0 82 79.0 83 51.5 84 35.5 85 26.5 86 22.0 87 20.5 88 13.0 89 7.5 90 6.0 91 5.5 92 5.0 93 2.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 2.1299578896675422E-5 2 0.005197097250788803 3 2.1299578896675422E-5 4 2.1299578896675422E-5 5 2.1299578896675422E-5 6 2.1299578896675422E-5 7 2.1299578896675422E-5 8 0.0 9 2.3429536786342966E-4 10-11 8.945823136603677E-4 12-13 0.0 14-15 1.597468417250657E-5 16-17 0.0016081182066989945 18-19 0.0 20-21 0.0 22-23 7.66850133786059E-4 24-25 0.002673707927980748 26-27 0.007074920477734004 28-29 0.3618887737252335 30-31 0.33281846356323136 32-33 0.3317354706744593 34-35 0.18552526498802355 36-37 0.04662888106409702 38-39 0.04482973150250977 40-41 0.025034335020980288 42-43 0.02443494330813237 44-45 0.013285162666267353 46-47 0.009053114195747464 48-49 0.008837544238576626 50-51 0.007517304475850958 52-53 0.006076318444802476 54-55 5.845042709321975E-4 56-57 0.0034484038266429633 58-59 0.002512636147219059 60-61 0.004807995394732874 62-63 0.0011274854342602616 64-65 7.223128022540494E-5 66-67 9.300478774058302E-4 68-69 0.0019345621754157806 70-71 0.004268985023370522 72-73 0.002507195808670623 74-75 0.0018172705925410225 76-77 8.062504631141053E-4 78-79 1.876139107563325E-4 80-81 0.001151734548221326 82-83 0.0013040567949170116 84-85 6.695997367133835E-6 86-87 0.0038562072500627057 88-89 0.0017023420588660274 90-91 0.004676597942018536 92-93 0.013338337269284364 94-95 0.001448720320956098 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 126.0 20-21 452.0 22-23 1058.0 24-25 2242.0 26-27 3605.0 28-29 6578.0 30-31 18044.0 32-33 25043.0 34-35 36165.0 36-37 49405.0 38-39 56782.0 40-41 62800.0 42-43 76371.0 44-45 91610.0 46-47 90654.0 48-49 78242.0 50-51 68859.0 52-53 64794.0 54-55 69709.0 56-57 72218.0 58-59 41902.0 60-61 73634.0 62-63 73620.0 64-65 79443.0 66-67 84352.0 68-69 83338.0 70-71 81774.0 72-73 80431.0 74-75 81948.0 76-77 84022.0 78-79 87975.0 80-81 87892.0 82-83 85810.0 84-85 88352.0 86-87 92409.0 88-89 98037.0 90-91 103484.0 92-93 105929.0 94-95 116471.0 96-97 174001.0 98-99 810356.0 100-101 5899920.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.22503045578031 #Duplication Level Percentage of deduplicated Percentage of total 1 89.6920670540856 76.44009146326336 2 7.277523084435032 12.404542530272398 3 1.7132441849034181 4.38033863509747 4 0.6012032308056562 2.049502546221023 5 0.2865646704351924 1.221124138269496 6 0.14819668839317998 0.757804036905273 7 0.08394506848901226 0.5007954713012044 8 0.050724303811163364 0.3458384269723721 9 0.03521171304544794 0.27008273850286485 >10 0.1088847529529063 1.4242022725624732 >50 0.0018447227029241894 0.1028758588581646 >100 5.505554693206236E-4 0.08173310476857049 >500 3.9970471150541424E-5 0.021068777005313965 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.0649789448337711E-5 0.0 2 0.0 0.0 0.0 1.0649789448337711E-5 0.0 3 0.0 0.0 0.0 1.0649789448337711E-5 0.0 4 0.0 3.194936834501314E-5 0.0 1.0649789448337711E-5 0.0 5 0.0 3.194936834501314E-5 0.0 1.0649789448337711E-5 0.0 6 0.0 3.194936834501314E-5 0.0 1.0649789448337711E-5 0.0 7 0.0 3.194936834501314E-5 0.0 1.0649789448337711E-5 0.0 8 0.0 6.389873669002627E-5 0.0 2.1299578896675422E-5 0.0 9 0.0 1.1714768393171483E-4 0.0 2.1299578896675422E-5 0.0 10-11 0.0 1.1714768393171483E-4 0.0 2.662447362084428E-5 0.0 12-13 0.0 1.224725786558837E-4 0.0 3.194936834501314E-5 0.0 14-15 0.0 1.4377215755255913E-4 0.0 3.7274263069181994E-5 5.3248947241688556E-6 16-17 0.0 1.4909705227672798E-4 0.0 4.79240525175197E-5 1.0649789448337711E-5 18-19 0.0 1.5442194700089683E-4 0.0 6.922363141419514E-5 1.0649789448337711E-5 20-21 0.0 1.5974684172506568E-4 0.0 1.0117299975920827E-4 1.0649789448337711E-5 22-23 0.0 1.7572152589757223E-4 0.0 4.0469199903683307E-4 2.662447362084428E-5 24-25 0.0 1.916962100700788E-4 0.0 0.0014270717860772534 4.2599157793350844E-5 26-27 0.0 1.916962100700788E-4 0.0 0.0043823883579909685 4.2599157793350844E-5 28-29 0.0 1.916962100700788E-4 0.0 0.019936405847288195 4.2599157793350844E-5 30-31 0.0 2.1299578896675424E-4 0.0 0.02746580698726296 4.2599157793350844E-5 32-33 0.0 2.1299578896675424E-4 0.0 0.030037731139036516 4.2599157793350844E-5 34-35 0.0 2.555949467601051E-4 0.0 0.033658659551471334 4.2599157793350844E-5 36-37 0.0 3.0884389400179365E-4 0.0 0.03863743611856922 4.2599157793350844E-5 38-39 0.0 3.1949368345013135E-4 0.0 0.04787080357027801 4.79240525175197E-5 40-41 0.0 3.3014347289846905E-4 0.0 0.0676368127863928 5.324894724168856E-5 42-43 0.0 3.4611815707097566E-4 0.0 0.07693940386951581 5.324894724168856E-5 44-45 0.0 3.9936710431266417E-4 0.0 0.0894529064713126 5.324894724168856E-5 46-47 0.0 4.41966262106015E-4 0.0 0.10406974248915613 5.324894724168856E-5 48-49 0.0 4.472911568301839E-4 0.0 0.1170837851950248 5.324894724168856E-5 50-51 0.0 5.111898935202102E-4 0.0 0.12966118653351164 5.324894724168856E-5 52-53 0.0 5.111898935202102E-4 0.0 0.14679669775588702 6.389873669002627E-5 54-55 0.0 5.165147882443791E-4 0.0 0.18433720556127745 7.454852613836399E-5 56-57 0.0 5.218396829685479E-4 0.0 0.2252749962006876 7.987342086253284E-5 58-59 0.0 5.218396829685479E-4 0.0 0.25725631391404574 8.519831558670169E-5 60-61 0.0 5.324894724168856E-4 0.0 0.599513922309999 8.519831558670169E-5 62-63 0.0 5.644388407618987E-4 0.0 0.6070433234499737 8.519831558670169E-5 64-65 0.0 7.02886103590289E-4 0.0 0.6147484461158461 8.519831558670169E-5 66-67 0.0 7.02886103590289E-4 0.0 0.6216867839414382 8.519831558670169E-5 68-69 0.0 7.348354719353021E-4 0.0 0.6285026491883743 8.519831558670169E-5 70-71 0.0 7.454852613836398E-4 0.0 0.635116168435792 8.519831558670169E-5 72-73 0.0 7.454852613836398E-4 0.0 0.6393228352678852 1.1714768393171483E-4 74-75 0.0 7.614599455561463E-4 0.0 0.6434283291002195 1.1714768393171483E-4 76-77 0.0 7.934093139011595E-4 0.0 0.6473314769330353 1.1714768393171483E-4 78-79 0.0 8.040591033494971E-4 0.0 0.6508672070298834 1.1714768393171483E-4 80-81 0.0 8.09383998073666E-4 0.0 0.6523528526579265 1.224725786558837E-4 82-83 0.0 8.200337875220037E-4 0.0 0.6530131396037235 1.4377215755255913E-4 84-85 0.0 8.360084716945103E-4 0.0 0.653316658603001 1.4909705227672798E-4 86-87 0.0 8.519831558670169E-4 0.0 0.653439131181657 1.4909705227672798E-4 88-89 0.0 8.786076294878611E-4 0.0 0.6534604307605536 1.4909705227672798E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12415 0.0 53.032745 1 GTATCAA 23715 0.0 38.814236 1 TCAACGC 29930 0.0 30.11065 4 ATCAACG 30105 0.0 30.006624 3 TATCAAC 30710 0.0 29.541714 2 CAACGCA 30770 0.0 29.288963 5 AACGCAG 31525 0.0 28.628199 6 ACGCAGA 36160 0.0 24.923159 7 CGCAGAG 37215 0.0 24.216488 8 GAGACCG 7220 0.0 23.85636 88-89 CGAGACC 7195 0.0 23.659025 88-89 GACCGAG 7575 0.0 23.144701 90-91 AGACCGA 7420 0.0 23.035501 90-91 ACCGAGG 7760 0.0 22.800417 92-93 ATCTCCG 7505 0.0 22.07912 74-75 ACGAGAC 8135 0.0 21.372696 86-87 GCAGAGT 42285 0.0 21.232029 9 GCCCACG 8025 0.0 21.116714 82-83 CCCACGA 7970 0.0 20.998768 84-85 GTGGTAT 6075 0.0 20.972013 1 >>END_MODULE