##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139632_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8859656 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.92519325806781 34.0 31.0 34.0 31.0 34.0 2 33.05525485413881 34.0 33.0 34.0 31.0 34.0 3 33.113427993141045 34.0 33.0 34.0 31.0 34.0 4 36.4735332839108 37.0 37.0 37.0 35.0 37.0 5 36.43974416162433 37.0 37.0 37.0 35.0 37.0 6 36.46731295210559 37.0 37.0 37.0 35.0 37.0 7 36.44195948465719 37.0 37.0 37.0 35.0 37.0 8 36.42864485934894 37.0 37.0 37.0 35.0 37.0 9 38.22254577378625 39.0 39.0 39.0 37.0 39.0 10-11 38.16254462927229 39.0 39.0 39.0 37.0 39.0 12-13 38.13554437102299 39.0 39.0 39.0 37.0 39.0 14-15 39.64271654565369 41.0 40.0 41.0 37.0 41.0 16-17 39.61586296352816 41.0 40.0 41.0 37.0 41.0 18-19 39.62669114918232 41.0 40.0 41.0 37.0 41.0 20-21 39.6209463334433 41.0 40.0 41.0 37.0 41.0 22-23 39.56585817131867 41.0 40.0 41.0 37.0 41.0 24-25 39.5019524752895 41.0 39.5 41.0 37.0 41.0 26-27 39.45073602728908 41.0 39.0 41.0 36.5 41.0 28-29 39.277335882990656 41.0 39.0 41.0 36.0 41.0 30-31 39.19339186402975 41.0 39.0 41.0 36.0 41.0 32-33 39.08723033519284 41.0 39.0 41.0 35.0 41.0 34-35 38.99096659959045 40.0 39.0 41.0 35.0 41.0 36-37 39.08765917312448 40.5 39.0 41.0 35.0 41.0 38-39 39.109763247440206 41.0 39.0 41.0 35.0 41.0 40-41 39.10756266272614 41.0 39.0 41.0 35.0 41.0 42-43 39.06566769238437 40.5 39.0 41.0 35.0 41.0 44-45 38.99886658774851 40.0 39.0 41.0 35.0 41.0 46-47 38.91154796269407 40.0 38.5 41.0 35.0 41.0 48-49 38.83585894711078 40.0 38.0 41.0 35.0 41.0 50-51 38.745609343935605 40.0 38.0 41.0 35.0 41.0 52-53 38.64140926016486 40.0 38.0 41.0 35.0 41.0 54-55 38.5219800750036 40.0 38.0 41.0 34.5 41.0 56-57 38.35157458536047 40.0 37.5 41.0 34.0 41.0 58-59 38.19314505493625 40.0 37.0 41.0 34.0 41.0 60-61 38.00513608089986 40.0 36.5 41.0 34.0 41.0 62-63 37.75830191597193 39.0 36.0 41.0 34.0 41.0 64-65 37.46444743594448 39.0 35.5 40.5 33.0 41.0 66-67 37.14556848203591 38.0 35.0 40.0 33.0 41.0 68-69 36.83963926276183 37.5 35.0 40.0 33.0 41.0 70-71 36.5147611935424 37.0 35.0 39.5 32.5 41.0 72-73 36.17300442989334 36.5 35.0 39.0 32.0 40.5 74-75 35.80641051186082 36.0 35.0 39.0 32.0 40.0 76-77 34.86656742801367 35.0 34.0 37.0 30.5 39.0 78-79 35.097924837692545 35.0 34.0 37.0 31.0 39.0 80-81 34.91303706596557 35.0 34.0 37.0 31.0 39.0 82-83 34.63817984111023 35.0 34.0 36.0 31.0 38.5 84-85 34.385409310938954 35.0 34.0 36.0 31.0 37.0 86-87 34.1355129691391 35.0 34.0 35.5 31.0 37.0 88-89 33.83511413326623 35.0 34.0 35.0 31.0 36.5 90-91 33.75185305568738 35.0 34.0 35.0 31.0 36.0 92-93 33.66512355687588 35.0 34.0 35.0 31.0 36.0 94-95 33.55355422724037 35.0 33.5 35.0 30.5 35.5 96-97 33.51467981220481 35.0 33.0 35.0 30.0 35.0 98-99 33.52129268529768 34.5 33.0 35.0 30.5 35.0 100-101 32.47901936730027 34.0 31.5 34.5 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 5 1.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 1.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 3.0 19 2.0 20 26.0 21 128.0 22 698.0 23 2364.0 24 6423.0 25 13473.0 26 23853.0 27 38399.0 28 55074.0 29 75268.0 30 97264.0 31 123302.0 32 157519.0 33 207307.0 34 303297.0 35 460168.0 36 863372.0 37 2050380.0 38 2961499.0 39 1353315.0 40 66520.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.41455275792937 21.046950591975712 15.374979654961695 24.163516995133218 2 13.776509339624655 21.467393911564592 41.44260834710717 23.313488401703587 3 16.84201211469432 26.568012701173206 31.307136824982106 25.282838359150368 4 11.95280312301135 18.747605719139823 39.092305410572465 30.207285747276362 5 12.987775820590736 37.916345265853494 35.76368783701937 13.332191076536398 6 29.478431099002282 38.38408362222723 18.788318369995036 13.349166908775445 7 26.04117497139279 33.041414484132225 23.197474754657463 17.719935789817526 8 24.460026942358365 36.41579722912461 21.2347546264499 17.889421202067123 9 25.408707536065815 16.900005824167042 21.44365750466498 36.247629135102166 10-11 23.868230193361732 27.03758239732746 29.033262444020387 20.060924965290422 12-13 24.839677712019 24.616830408952765 29.046489851635286 21.497002027392945 14-15 22.036222974182905 25.950693218419886 26.859351779389566 25.153732028007642 16-17 21.460890549749973 29.12750143842321 27.472898526473337 21.93870948535348 18-19 21.488936165625873 28.16042657193912 29.373735736534645 20.97690152590036 20-21 22.32499613266868 27.247661640198846 29.311871248258292 21.115470978874185 22-23 22.0460342986048 27.195227427324692 29.149078666083593 21.60965960798692 24-25 21.846099098168942 27.331509352918985 29.235528588428945 21.586862960483128 26-27 21.742009543808184 27.53214797007874 29.163608713012266 21.562233773100807 28-29 21.65613090360796 27.480225282758568 29.21114694182051 21.65249687181296 30-31 21.984781520148243 27.392038284821652 29.10021682492916 21.522963370100946 32-33 21.842669429301544 27.500964132892076 29.044918360228245 21.611448077578135 34-35 21.80458348354518 27.523551879542254 29.132712812542394 21.539151824370176 36-37 21.8670099281312 27.520595202684717 28.976117196596817 21.636277672587266 38-39 21.72263745341061 27.621010163716175 29.022247542581457 21.634104840291755 40-41 21.933943814086206 27.499259140714077 28.874887471080797 21.691909574118924 42-43 21.899415146752755 27.59944981522934 28.641625842268432 21.85950919574947 44-45 21.91602890776381 27.7352272997057 28.465278178753433 21.88346561377706 46-47 22.10286949159857 27.65164370927756 28.109992293961138 22.135494505162725 48-49 21.996756477274722 27.777608458353814 28.102791392055458 22.122843672316 50-51 22.003075012926033 27.916356081363176 27.986552226263207 22.094016679447588 52-53 22.219274786825554 27.83192155899125 27.85325235804274 22.09555129614045 54-55 22.1686000899898 27.760666998182288 27.84486047148223 22.225872440345682 56-57 22.160206597322258 27.892290100257384 27.775187060120228 22.17231624230013 58-59 22.071530207097098 27.956474192085203 27.893618078899458 22.07837752191824 60-61 22.122379011649006 27.89631986500092 27.82721925755125 22.154081865798826 62-63 22.241401241797963 28.006095641112832 27.777981385624866 21.97452173146434 64-65 22.073060771621943 27.912112512287308 27.76218735099436 22.252639365096385 66-67 22.140363502487638 27.92999078319733 27.63012079335056 22.299524920964476 68-69 22.068815207132836 28.042210188343102 27.754768021291166 22.134206583232892 70-71 22.09394145606057 27.820591959734607 27.798768058787243 22.28669852541758 72-73 22.14707435337993 27.862201584361877 27.516679510272773 22.47404455198542 74-75 22.037580380302337 27.957957104624164 27.490206813893643 22.514255701179852 76-77 22.16523112518732 27.663564283810633 27.6738380413866 22.497366549615442 78-79 22.158881288491138 27.649845715525736 27.60353178439871 22.58774121158442 80-81 22.33013677081815 27.706849330527483 27.396517017115997 22.56649688153837 82-83 22.43195327689777 27.832057963093803 27.453314881997066 22.282673878011362 84-85 22.252480788670418 27.59153650055916 27.45631889804898 22.69966381272144 86-87 22.13923204256741 27.796098883747977 27.547374960615574 22.517294113069042 88-89 22.43900036464121 27.570158869508564 27.48854663691932 22.50229412893091 90-91 22.439624454763916 27.775121638145468 27.51885320129831 22.266400705792307 92-93 22.292860245969155 27.687622326043943 27.548755289622434 22.47076213836447 94-95 22.390757005634867 27.476312300681847 27.57946468716186 22.553466006521422 96-97 22.393740070325237 27.69615966535182 27.644290908579944 22.265809355743 98-99 22.64753510134338 28.098124613092857 27.78188370866022 21.472456576903546 100-101 23.039566997003025 30.90988059318437 24.98276790144031 21.0677845083723 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2329.0 1 1988.5 2 2456.5 3 3513.0 4 4748.5 5 7184.0 6 9223.5 7 11111.5 8 12795.5 9 13199.5 10 12208.5 11 11162.0 12 12405.5 13 16672.5 14 27002.0 15 41141.0 16 52420.0 17 58384.0 18 58728.5 19 54929.0 20 49141.5 21 43385.5 22 40225.0 23 41712.5 24 48320.0 25 59893.5 26 75223.5 27 92361.5 28 111546.5 29 132358.5 30 151571.5 31 171115.5 32 192964.0 33 214919.5 34 236297.0 35 256247.5 36 277856.5 37 295632.5 38 308055.0 39 319941.0 40 331647.0 41 341974.5 42 346035.0 43 349735.5 44 354272.0 45 356451.5 46 356930.5 47 355903.5 48 355594.5 49 353869.5 50 348523.5 51 337586.0 52 321295.5 53 303642.5 54 284557.0 55 264023.0 56 241869.5 57 218266.0 58 194786.5 59 169408.0 60 142323.0 61 116129.0 62 92205.5 63 71173.0 64 52889.5 65 39004.5 66 29487.5 67 22723.5 68 17454.0 69 12896.5 70 9330.0 71 6805.0 72 4862.0 73 3363.0 74 2289.0 75 1465.0 76 939.5 77 605.0 78 368.5 79 228.0 80 152.0 81 106.5 82 75.5 83 49.5 84 35.0 85 25.5 86 18.5 87 15.0 88 11.5 89 6.5 90 4.5 91 4.0 92 3.5 93 2.5 94 1.5 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 2.2574239902768235E-5 2 0.005271085017296382 3 2.2574239902768235E-5 4 2.2574239902768235E-5 5 2.2574239902768235E-5 6 2.2574239902768235E-5 7 2.2574239902768235E-5 8 1.1287119951384118E-5 9 2.2574239902768234E-4 10-11 7.844548366211961E-4 12-13 2.2574239902768235E-5 14-15 2.8217799878460292E-5 16-17 0.001450394913752859 18-19 1.6930679927076178E-5 20-21 0.0 22-23 8.466099648702017E-4 24-25 0.0025006802075959716 26-27 0.007413640963861408 28-29 0.3650477588052535 30-31 0.3355001321136022 32-33 0.33444823633088017 34-35 0.1863162263245265 36-37 0.04719500385655982 38-39 0.045465281362969394 40-41 0.025419169551575027 42-43 0.025059190132537084 44-45 0.01325803877032687 46-47 0.008843668971880861 48-49 0.0088317178898337 50-51 0.007543256994006063 52-53 0.006148768015723365 54-55 5.930804992441587E-4 56-57 0.003346217400108632 58-59 0.0025474841729779033 60-61 0.0049640571045148196 62-63 0.0012216321584968231 64-65 5.0819909360150666E-5 66-67 7.183538511014096E-4 68-69 0.0015289932428216844 70-71 0.0039130980749978615 72-73 0.002054670487340752 74-75 0.0013273971775800615 76-77 5.052642130991567E-4 78-79 2.110124684544868E-4 80-81 0.0011835412351959291 82-83 0.0011061218137865493 84-85 0.0 86-87 0.003663533669581701 88-89 0.0018433338997744797 90-91 0.004989435381195052 92-93 0.013305734719890985 94-95 0.0013963665191848373 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 105.0 20-21 474.0 22-23 962.0 24-25 2182.0 26-27 3275.0 28-29 6028.0 30-31 16599.0 32-33 22757.0 34-35 32914.0 36-37 45563.0 38-39 52438.0 40-41 56659.0 42-43 69001.0 44-45 82885.0 46-47 81764.0 48-49 71324.0 50-51 62862.0 52-53 58779.0 54-55 62840.0 56-57 66391.0 58-59 39202.0 60-61 67862.0 62-63 68060.0 64-65 73149.0 66-67 78591.0 68-69 77271.0 70-71 73798.0 72-73 71791.0 74-75 73652.0 76-77 75409.0 78-79 78808.0 80-81 79625.0 82-83 77784.0 84-85 79640.0 86-87 83520.0 88-89 88008.0 90-91 94168.0 92-93 96531.0 94-95 107854.0 96-97 161322.0 98-99 769228.0 100-101 5648581.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.69956745809992 #Duplication Level Percentage of deduplicated Percentage of total 1 90.09530969742777 77.21129071073116 2 7.061630024542977 12.103572773049294 3 1.5994166605002007 4.112079479704376 4 0.5692283785129729 1.9513050329374948 5 0.257498010993302 1.103373408172352 6 0.14057643196574043 0.722840364856018 7 0.08245021889890515 0.4946163667523279 8 0.04919599842697737 0.33728606286890594 9 0.030151727507779634 0.2325591004978087 >10 0.11151031188082093 1.461176189691312 >50 0.0024935747170551762 0.13979630993535588 >100 4.3399166195930356E-4 0.059664793053518954 >500 8.397873836340895E-5 0.047067851447460556 >1k 2.0994225217006925E-5 0.023371556302598403 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 2.2574239902768235E-5 0.0 1.1287119951384118E-5 0.0 5 0.0 3.386135985415235E-5 0.0 1.1287119951384118E-5 0.0 6 0.0 4.514847980553647E-5 0.0 2.2574239902768235E-5 1.1287119951384118E-5 7 0.0 4.514847980553647E-5 0.0 2.2574239902768235E-5 1.1287119951384118E-5 8 0.0 4.514847980553647E-5 0.0 2.2574239902768235E-5 1.1287119951384118E-5 9 0.0 1.354454394166094E-4 0.0 3.386135985415235E-5 1.1287119951384118E-5 10-11 0.0 1.354454394166094E-4 0.0 3.386135985415235E-5 1.1287119951384118E-5 12-13 0.0 1.354454394166094E-4 0.0 3.386135985415235E-5 1.1287119951384118E-5 14-15 0.0 1.6930679927076175E-4 0.0 3.386135985415235E-5 2.2574239902768235E-5 16-17 0.0 1.9188103917352998E-4 0.0 5.6435599756920584E-5 2.2574239902768235E-5 18-19 0.0 2.0881171910060615E-4 0.0 1.0158407956245705E-4 3.9504919829844406E-5 20-21 0.0 2.4267307895475853E-4 0.0 2.0881171910060615E-4 4.514847980553647E-5 22-23 0.0 2.991086787116791E-4 0.0 6.095044773747424E-4 5.079203978122853E-5 24-25 0.0 3.103957986630632E-4 0.0 0.0016761373127805413 6.77227197083047E-5 26-27 0.0 3.1603935863875525E-4 0.0 0.004729303259629945 6.77227197083047E-5 28-29 0.0 3.216829186144473E-4 0.0 0.019978202313949887 7.336627968399675E-5 30-31 0.0 4.063363182498282E-4 0.0 0.0276421567609397 7.900983965968881E-5 32-33 0.0 4.063363182498282E-4 0.0 0.03020997654987959 1.0158407956245705E-4 34-35 0.0 4.5712835803105674E-4 0.0 0.03350017201570806 1.0158407956245705E-4 36-37 0.0 5.361381976907455E-4 0.0 0.038308485114997695 1.0158407956245705E-4 38-39 0.0 5.7564311752059E-4 0.0 0.04656501335943518 1.0158407956245705E-4 40-41 0.0 6.546529571802788E-4 0.0 0.06597321611584017 1.0158407956245705E-4 42-43 0.0 6.77227197083047E-4 0.0 0.07458528863874625 1.0158407956245705E-4 44-45 0.0 7.393063568156596E-4 0.0 0.08660607138697032 1.0158407956245705E-4 46-47 0.0 7.78811276645504E-4 0.0 0.10016754600855834 1.0158407956245705E-4 48-49 0.0 7.900983965968882E-4 0.0 0.11254951659522672 1.1287119951384117E-4 50-51 0.0 8.860389161836532E-4 0.0 0.12376327026692685 1.1287119951384117E-4 52-53 0.0 8.916824761593452E-4 0.0 0.1394918719191806 1.1851475948953323E-4 54-55 0.0 9.142567160621135E-4 0.0 0.17404174609036738 1.241583194652253E-4 56-57 0.0 9.368309559648817E-4 0.0 0.21215270660621588 1.2980187944091736E-4 58-59 0.0 9.481180759162659E-4 0.0 0.24232882179624132 1.4108899939230146E-4 60-61 0.0 9.763358757947261E-4 0.0 0.5702027257040228 1.4673255936799352E-4 62-63 0.0 9.819794357704182E-4 0.0 0.5769129185151207 1.4673255936799352E-4 64-65 0.0 0.001072276395381491 0.0 0.5834086560471423 1.5237611934368556E-4 66-67 0.0 0.0010892070753085671 0.0 0.5893908296213758 1.5801967931937763E-4 68-69 0.0 0.0011174248751870276 0.0 0.5957059732341752 1.636632392950697E-4 70-71 0.0 0.001145642675065488 0.0 0.6013156718500131 1.6930679927076175E-4 72-73 0.0 0.001162573354992564 0.0 0.6055257675918795 2.031681591249141E-4 74-75 0.0 0.0011907911548710245 0.0 0.609143289536298 2.031681591249141E-4 76-77 0.0 0.0012133653947737928 0.0 0.6124165543221994 2.031681591249141E-4 78-79 0.0 0.0012246525147251767 0.0 0.6154358589091946 2.031681591249141E-4 80-81 0.0 0.0012302960747008688 0.0 0.6166774421038469 2.2009883905199027E-4 82-83 0.0 0.0012302960747008688 0.0 0.6169539765426558 2.3702951897906646E-4 84-85 0.0 0.0012302960747008688 0.0 0.6172361545414404 2.3702951897906646E-4 86-87 0.0 0.001264157434555021 0.0 0.6173320950610273 2.3702951897906646E-4 88-89 0.0 0.0012867316744577893 0.0 0.6173828871008085 2.3702951897906646E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11845 0.0 52.894478 1 GTATCAA 22060 0.0 38.88659 1 TCAACGC 27360 0.0 30.709272 4 ATCAACG 27660 0.0 30.46894 3 CAACGCA 28030 0.0 29.96009 5 TATCAAC 28620 0.0 29.598524 2 AACGCAG 28785 0.0 29.218992 6 ACGCAGA 33185 0.0 25.306053 7 CGCAGAG 34115 0.0 24.616192 8 GCAGAGT 38720 0.0 21.555578 9 GTGGTAT 5605 0.0 21.13129 1 GTACATG 27300 0.0 20.529251 1 GAGTACT 23215 0.0 20.148628 12-13 TGGTATC 5420 0.0 20.110691 2 TACATGG 27550 0.0 19.860088 2 AGACCGA 8425 0.0 19.541594 90-91 ACATGGG 27460 0.0 19.424 3 GAGACCG 8440 0.0 19.39485 88-89 CGAGACC 8370 0.0 19.318552 88-89 AGAGTAC 35505 0.0 19.247427 10-11 >>END_MODULE