##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139631_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8169973 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.92237526366366 34.0 31.0 34.0 31.0 34.0 2 33.053565538099086 34.0 33.0 34.0 31.0 34.0 3 33.11210171686002 34.0 33.0 34.0 31.0 34.0 4 36.471986137530685 37.0 37.0 37.0 35.0 37.0 5 36.437077699032784 37.0 37.0 37.0 35.0 37.0 6 36.466807540245235 37.0 37.0 37.0 35.0 37.0 7 36.442280164206174 37.0 37.0 37.0 35.0 37.0 8 36.42982871546822 37.0 37.0 37.0 35.0 37.0 9 38.223308326722744 39.0 39.0 39.0 37.0 39.0 10-11 38.163787077386914 39.0 39.0 39.0 37.0 39.0 12-13 38.13586464728831 39.0 39.0 39.0 37.0 39.0 14-15 39.64309478134138 41.0 40.0 41.0 37.0 41.0 16-17 39.616566419497346 41.0 40.0 41.0 37.0 41.0 18-19 39.63026126279732 41.0 40.0 41.0 37.0 41.0 20-21 39.62645994110824 41.0 40.0 41.0 37.0 41.0 22-23 39.56898128066702 41.0 40.0 41.0 37.0 41.0 24-25 39.505304457067524 41.0 39.5 41.0 37.0 41.0 26-27 39.45571693169643 41.0 39.0 41.0 36.5 41.0 28-29 39.284080601468254 41.0 39.0 41.0 36.0 41.0 30-31 39.195726778181424 41.0 39.0 41.0 36.0 41.0 32-33 39.08699537493401 41.0 39.0 41.0 35.0 41.0 34-35 38.990425868333574 40.0 39.0 41.0 35.0 41.0 36-37 39.084374009941556 40.5 39.0 41.0 35.0 41.0 38-39 39.10913632975952 41.0 39.0 41.0 35.0 41.0 40-41 39.10209302022426 41.0 39.0 41.0 35.0 41.0 42-43 39.05876335039026 40.5 39.0 41.0 35.0 41.0 44-45 38.99133250294288 40.0 39.0 41.0 35.0 41.0 46-47 38.905737100737184 40.0 38.5 41.0 35.0 41.0 48-49 38.82932642849367 40.0 38.0 41.0 35.0 41.0 50-51 38.7405583790902 40.0 38.0 41.0 35.0 41.0 52-53 38.635871423033564 40.0 38.0 41.0 35.0 41.0 54-55 38.51577662424966 40.0 38.0 41.0 34.5 41.0 56-57 38.3473194787843 40.0 37.5 41.0 34.0 41.0 58-59 38.189651303862505 40.0 37.0 41.0 34.0 41.0 60-61 38.00337306793256 40.0 36.5 41.0 34.0 41.0 62-63 37.75734384331792 39.0 36.0 41.0 34.0 41.0 64-65 37.46505778456205 39.0 35.5 40.5 33.0 41.0 66-67 37.14869961479841 38.0 35.0 40.0 33.0 41.0 68-69 36.84184859503895 37.5 35.0 40.0 33.0 41.0 70-71 36.51979584331842 37.0 35.0 39.5 32.5 41.0 72-73 36.179774331020035 36.5 35.0 39.0 32.0 41.0 74-75 35.8161360314473 36.0 35.0 39.0 32.0 40.0 76-77 34.87434316937633 35.0 34.0 37.0 30.5 39.0 78-79 35.108116619095284 35.0 34.0 37.0 31.0 39.0 80-81 34.923323841795074 35.0 34.0 37.0 31.0 39.0 82-83 34.64763492765212 35.0 34.0 36.0 31.0 38.5 84-85 34.39456911266872 35.0 34.0 36.0 31.0 37.0 86-87 34.14469870363064 35.0 34.0 35.5 31.0 37.0 88-89 33.841437002739355 35.0 34.0 35.0 31.0 36.5 90-91 33.755468165811024 35.0 34.0 35.0 31.0 36.0 92-93 33.67093445180548 35.0 34.0 35.0 31.0 36.0 94-95 33.559406018797276 35.0 33.5 35.0 30.5 35.5 96-97 33.5185313766049 35.0 33.0 35.0 30.0 35.0 98-99 33.524143274046104 35.0 33.0 35.0 30.5 35.0 100-101 32.470716921577214 34.0 31.5 34.5 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 2.0 20 24.0 21 154.0 22 697.0 23 2295.0 24 6083.0 25 12323.0 26 22367.0 27 35420.0 28 50730.0 29 69181.0 30 89893.0 31 114292.0 32 144734.0 33 190897.0 34 277978.0 35 425167.0 36 798986.0 37 1886107.0 38 2724632.0 39 1256254.0 40 61756.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.50749898439077 21.08746259014565 15.401348327589332 24.00369009787425 2 13.783398337064881 21.559144582473582 41.447740390482636 23.209716689978897 3 16.827754510327022 26.691275479123373 31.36313914378909 25.117830866760514 4 11.910528957684438 18.73120021326876 39.24322638520348 30.115044443843324 5 12.967141996674897 37.906502261390585 35.77102396788827 13.355331774046256 6 29.322520404902196 38.53017629311627 18.844933759267015 13.302369542714523 7 26.006267095374735 33.09815099756144 23.31751891958517 17.57806298747866 8 24.420239822089986 36.406693143294355 21.269898933570527 17.903168101045132 9 25.388395937355302 16.9351485547829 21.506609159983743 36.16984634787806 10-11 23.821019249118702 27.048547006015305 29.10737717744995 20.02305656741604 12-13 24.82482500248165 24.703729131050984 29.118296963772096 21.35314890269527 14-15 22.000639781913563 26.01367703669468 26.98885179709623 24.996831384295525 16-17 21.365222629016188 29.175613692643203 27.609495012574897 21.849668665765712 18-19 21.39829242988838 28.160665666908034 29.56060926524595 20.880432637957632 20-21 22.249097651445716 27.25000832334532 29.534613610725952 20.966280414483013 22-23 21.99004394737968 27.170048382329654 29.361033633458543 21.478874036832117 24-25 21.72941178559122 27.357841506938215 29.40728624123874 21.505460466231828 26-27 21.679921531396747 27.512992780183076 29.322907022200273 21.484178666219897 28-29 21.608754784798865 27.47038622799294 29.381268684400563 21.539590302807635 30-31 21.87955858486945 27.413784819198344 29.255850692112805 21.4508059038194 32-33 21.724695411425813 27.54061751180651 29.149808776276043 21.584878300491642 34-35 21.768832448907233 27.553434694193996 29.179326897911253 21.49840595898752 36-37 21.80030521515366 27.49620028362716 29.111648376595667 21.59184612462352 38-39 21.66650000724922 27.64502029438794 29.13697780040557 21.55150189795727 40-41 21.88569398640207 27.575415780501487 28.932404774508385 21.606485458588054 42-43 21.821901711508975 27.66547236592852 28.70893584269032 21.803690079872183 44-45 21.891806905064954 27.787729893231468 28.50645565639858 21.814007545305003 46-47 22.001738369207875 27.754590178592693 28.21223278639299 22.031438665806448 48-49 21.947419853172875 27.874364490947702 28.140396885653306 22.037818770226117 50-51 21.989301266095023 27.983968558545484 27.982348349944935 22.044381825414554 52-53 22.145223527231302 27.90271719371184 27.854717237940513 22.09734204111634 54-55 22.149581707849713 27.839008636863756 27.84086494336011 22.170544711926425 56-57 22.09896075524141 27.972333759227208 27.794583594797786 22.134121890733596 58-59 22.013992752677595 27.996284246643405 27.927649655307896 22.062073345371108 60-61 22.09401170432931 27.849465051616257 27.903737384999623 22.15278585905481 62-63 22.203940295573364 27.95726602489937 27.86438655660651 21.97440712292076 64-65 22.046240297701246 27.868335549487007 27.83192976933964 22.253494383472106 66-67 22.12409613695514 27.88783248202212 27.66954535665389 22.31852602436885 68-69 22.041207750601664 28.07589712737744 27.77699211115064 22.10590301087025 70-71 22.01968729130288 27.829864703480933 27.87202147719972 22.278426528016464 72-73 22.083879095001897 27.85518169390107 27.585371440023476 22.475567771073557 74-75 22.01484450031434 27.9893218926279 27.52563451851855 22.47019908853921 76-77 22.131988469551256 27.723435656783522 27.695705177190753 22.44887069647446 78-79 22.0887977300616 27.719074099414186 27.640225238200795 22.551902932323422 80-81 22.30570369973159 27.716994932316908 27.426436034345002 22.5508653336065 82-83 22.352510107346678 27.877696241335403 27.50140900341494 22.268384647902977 84-85 22.223324343127256 27.630592114668012 27.49771750421714 22.648366037987593 86-87 22.129791470856777 27.80097030692964 27.586044128896468 22.48319409331711 88-89 22.3942371230027 27.582272464887943 27.52646858410165 22.497021828007707 90-91 22.40613216578399 27.80506947224512 27.52907928902701 22.259719072943877 92-93 22.256457480483284 27.730848066495184 27.599987674665083 22.412706778356455 94-95 22.321834118049562 27.502598523973216 27.636687248497093 22.538880109480132 96-97 22.371706840939947 27.713233398407638 27.6800843709048 22.234975389747618 98-99 22.607053493451474 28.179420829750395 27.760245246015298 21.453280430782833 100-101 22.987428547159357 30.950996044393907 25.009189206928973 21.052386201517763 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2410.0 1 2032.5 2 2389.0 3 3255.5 4 4340.0 5 6748.5 6 8845.0 7 10891.0 8 12614.0 9 12826.5 10 11672.0 11 10587.0 12 11818.5 13 15959.5 14 25975.0 15 39783.0 16 50691.5 17 56490.0 18 57060.5 19 53356.5 20 47560.5 21 41868.5 22 38510.5 23 39649.5 24 45769.5 25 56792.5 26 71029.5 27 87130.5 28 105945.5 29 126109.5 30 145130.0 31 163954.0 32 184273.5 33 204514.0 34 222490.5 35 239072.0 36 258356.0 37 274357.5 38 284260.5 39 293498.5 40 303489.0 41 312201.5 42 315690.5 43 319715.5 44 324545.0 45 326914.5 46 327431.0 47 324839.5 48 321424.5 49 318471.0 50 314117.5 51 304099.5 52 288516.0 53 272384.0 54 256537.0 55 238951.5 56 219783.5 57 199501.5 58 178543.5 59 155253.5 60 130445.0 61 107252.0 62 85789.0 63 66258.5 64 49386.5 65 36720.0 66 27828.5 67 21498.5 68 16557.5 69 12315.5 70 8888.0 71 6296.0 72 4521.5 73 3280.5 74 2300.5 75 1497.0 76 958.0 77 569.0 78 343.0 79 224.0 80 149.0 81 107.0 82 76.0 83 45.0 84 24.5 85 15.0 86 10.0 87 7.5 88 7.5 89 7.5 90 5.5 91 4.5 92 3.5 93 2.5 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.005410054598711648 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 2.937586207445239E-4 10-11 8.139561783129517E-4 12-13 0.0 14-15 1.8359913796532744E-5 16-17 0.0015422327589087504 18-19 1.2239942531021829E-5 20-21 1.2240212206110975E-5 22-23 7.22219593805339E-4 24-25 0.0024914147195475053 26-27 0.007145579705818871 28-29 0.3662460226769815 30-31 0.3370708047962476 32-33 0.3354258488504701 34-35 0.1865979011771699 36-37 0.047615736490542675 38-39 0.045901005959729395 40-41 0.026110305874756254 42-43 0.0257102285255647 44-45 0.013871299125637943 46-47 0.009319388737955155 48-49 0.009161519467159807 50-51 0.007786847844143889 52-53 0.006785218227689152 54-55 7.955535979044058E-4 56-57 0.0033676578293935187 58-59 0.0028361153761376125 60-61 0.005510196469642846 62-63 0.0015972255782161367 64-65 4.8192197091215366E-5 66-67 8.408684878905209E-4 68-69 0.001761577812260722 70-71 0.004430270100454425 72-73 0.0022831999641559075 74-75 0.0015321106175193522 76-77 7.518341468470776E-4 78-79 1.9179216574737975E-4 80-81 0.0010963240775738034 82-83 0.001206517668772593 84-85 1.5248403739914992E-5 86-87 0.003655755547493355 88-89 0.0016084251495542593 90-91 0.005118578962229081 92-93 0.013727703814079234 94-95 0.0015232494707115374 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 104.0 20-21 429.0 22-23 915.0 24-25 2008.0 26-27 2999.0 28-29 5474.0 30-31 14795.0 32-33 20816.0 34-35 30467.0 36-37 40888.0 38-39 47398.0 40-41 52422.0 42-43 63524.0 44-45 77986.0 46-47 75748.0 48-49 65436.0 50-51 57795.0 52-53 54587.0 54-55 58012.0 56-57 60708.0 58-59 35710.0 60-61 61390.0 62-63 61677.0 64-65 65906.0 66-67 70797.0 68-69 70947.0 70-71 68645.0 72-73 66797.0 74-75 68323.0 76-77 70780.0 78-79 73659.0 80-81 74151.0 82-83 72380.0 84-85 74158.0 86-87 77931.0 88-89 82657.0 90-91 87763.0 92-93 90534.0 94-95 100223.0 96-97 149466.0 98-99 709537.0 100-101 5204031.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.8919256311553 #Duplication Level Percentage of deduplicated Percentage of total 1 90.2300859206718 77.50035829591096 2 6.906153863788492 11.86365708131674 3 1.6125174031220213 4.1550667460370105 4 0.5739670364485268 1.9719653603748586 5 0.2624520235260367 1.1271254843222283 6 0.14013545562363006 0.7221902479627738 7 0.08014721171934992 0.4818798843980004 8 0.04931315558959218 0.3388481514031074 9 0.03509679150654724 0.2713077905375267 >10 0.10831656804575658 1.404351510751351 >50 0.0013929757335816573 0.07612412251918778 >100 3.992146469613528E-4 0.07163219076958408 >500 2.2379577711018164E-5 0.015493133696756149 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.2239942531021829E-5 0.0 2 0.0 1.2239942531021829E-5 0.0 1.2239942531021829E-5 0.0 3 0.0 1.2239942531021829E-5 0.0 1.2239942531021829E-5 0.0 4 0.0 6.119971265510914E-5 0.0 2.4479885062043657E-5 0.0 5 0.0 6.119971265510914E-5 0.0 2.4479885062043657E-5 0.0 6 3.671982759306549E-5 6.119971265510914E-5 0.0 2.4479885062043657E-5 0.0 7 3.671982759306549E-5 6.119971265510914E-5 0.0 3.671982759306549E-5 1.2239942531021829E-5 8 3.671982759306549E-5 7.343965518613097E-5 0.0 3.671982759306549E-5 1.2239942531021829E-5 9 4.8959770124087314E-5 1.4687931037226195E-4 0.0 4.8959770124087314E-5 1.2239942531021829E-5 10-11 4.8959770124087314E-5 1.4687931037226195E-4 0.0 6.119971265510914E-5 1.2239942531021829E-5 12-13 4.8959770124087314E-5 1.4687931037226195E-4 0.0 6.119971265510914E-5 1.2239942531021829E-5 14-15 4.8959770124087314E-5 1.5911925290328376E-4 0.0 7.343965518613097E-5 1.2239942531021829E-5 16-17 1.1627945404470737E-4 1.5911925290328376E-4 0.0 1.1015948277919645E-4 2.4479885062043657E-5 18-19 1.2239942531021828E-4 1.713591954343056E-4 0.0 1.8359913796532742E-4 2.4479885062043657E-5 20-21 1.2239942531021828E-4 1.8359913796532742E-4 0.0 2.8151867821350204E-4 2.4479885062043657E-5 22-23 1.2239942531021828E-4 1.9583908049634926E-4 0.0 5.875172414890478E-4 2.4479885062043657E-5 24-25 1.2239942531021828E-4 2.5091882188594747E-4 0.0 0.0016952320405465232 3.059985632755457E-5 26-27 1.2239942531021828E-4 2.6927873568248023E-4 0.0 0.004645058190522784 3.671982759306549E-5 28-29 1.2239942531021828E-4 2.6927873568248023E-4 0.0 0.019914386497972517 3.671982759306549E-5 30-31 1.2851939657572919E-4 3.059985632755457E-4 0.0 0.027252232045320103 3.671982759306549E-5 32-33 1.5299928163777285E-4 3.182385058065675E-4 0.0 0.02965126078140038 3.671982759306549E-5 34-35 1.5911925290328376E-4 3.916781609926985E-4 0.0 0.03285200575326259 4.8959770124087314E-5 36-37 1.6523922416879466E-4 4.5287787364780766E-4 0.0 0.03736854454720964 4.8959770124087314E-5 38-39 1.713591954343056E-4 4.5287787364780766E-4 0.0 0.045526466244135685 4.8959770124087314E-5 40-41 1.713591954343056E-4 5.752772989580259E-4 0.0 0.0639842995809166 4.8959770124087314E-5 42-43 1.713591954343056E-4 5.936372127545587E-4 0.0 0.07242373995605615 4.8959770124087314E-5 44-45 1.713591954343056E-4 6.548369254096678E-4 0.0 0.0839415258777477 4.8959770124087314E-5 46-47 1.713591954343056E-4 7.099166667992661E-4 0.0 0.09736262286301313 4.8959770124087314E-5 48-49 1.713591954343056E-4 7.16036638064777E-4 0.0 0.10915580749165266 4.8959770124087314E-5 50-51 1.7747916669981652E-4 8.017162357819297E-4 0.0 0.12068583335587524 4.8959770124087314E-5 52-53 1.8359913796532742E-4 8.139561783129515E-4 0.0 0.13733827516933042 5.5079741389598224E-5 54-55 1.8359913796532742E-4 8.261961208439735E-4 0.0 0.17194059270452913 6.119971265510914E-5 56-57 1.8359913796532742E-4 8.56795977171528E-4 0.0 0.20902149860225977 6.119971265510914E-5 58-59 1.8359913796532742E-4 8.56795977171528E-4 0.0 0.23812196196976415 7.343965518613097E-5 60-61 1.8971910923083833E-4 8.690359197025498E-4 0.0 0.5664890202207522 7.343965518613097E-5 62-63 1.9583908049634926E-4 8.812758622335716E-4 0.0 0.573135309015097 7.343965518613097E-5 64-65 1.9583908049634926E-4 0.001077114942729921 0.0 0.5802711955106828 7.343965518613097E-5 66-67 2.14198994292882E-4 0.0010832349139954318 0.0 0.5866971653394693 7.343965518613097E-5 68-69 2.3255890808941473E-4 0.001132194684119519 0.0 0.5929089361739629 7.343965518613097E-5 70-71 2.4479885062043657E-4 0.0011750344829780956 0.0 0.5989493478130221 9.179956898266371E-5 72-73 2.4479885062043657E-4 0.0011933943967746283 0.0 0.603092568359773 1.2239942531021828E-4 74-75 2.4479885062043657E-4 0.0012239942531021828 0.0 0.606733951262752 1.2239942531021828E-4 76-77 2.5091882188594747E-4 0.0012851939657572919 0.0 0.610014255861066 1.2851939657572919E-4 78-79 2.5703879315145837E-4 0.0013219137933503575 0.0 0.6130375216662283 1.3463936784124012E-4 80-81 2.5703879315145837E-4 0.0013280337646158684 0.0 0.6142064361779409 1.4075933910675105E-4 82-83 2.5703879315145837E-4 0.0013341537358813793 0.0 0.6146960338791818 1.5911925290328376E-4 84-85 2.5703879315145837E-4 0.0013341537358813793 0.0 0.6150265123275194 1.5911925290328376E-4 86-87 2.5703879315145837E-4 0.001346393678412401 0.0 0.6151305518390331 1.6523922416879466E-4 88-89 2.5703879315145837E-4 0.0014075933910675104 0.0 0.6151427917815641 1.8359913796532742E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11150 0.0 53.904125 1 GTATCAA 21095 0.0 39.262363 1 TCAACGC 27175 0.0 30.05022 4 ATCAACG 27345 0.0 29.89439 3 TATCAAC 28050 0.0 29.404991 2 CAACGCA 27930 0.0 29.192043 5 AACGCAG 28690 0.0 28.50839 6 ACGCAGA 32755 0.0 24.944237 7 CGAGACC 5775 0.0 24.627966 88-89 CGCAGAG 33460 0.0 24.39304 8 GAGACCG 5860 0.0 24.319567 88-89 AGACCGA 6040 0.0 23.601387 90-91 GACCGAG 6165 0.0 23.405989 90-91 ACCGAGG 6410 0.0 22.909727 92-93 TGGTATC 5250 0.0 22.863754 2 ACGAGAC 6325 0.0 22.848118 86-87 ATCTCCG 6075 0.0 22.580997 74-75 GTGGTAT 5570 0.0 22.473799 1 CCCACGA 6325 0.0 22.04338 84-85 GCCCACG 6440 0.0 21.666325 82-83 >>END_MODULE