##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139629_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6788545 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.0712971630887 34.0 33.0 34.0 31.0 34.0 2 33.20630252874511 34.0 33.0 34.0 31.0 34.0 3 33.843506966514916 34.0 34.0 34.0 31.0 37.0 4 36.49142798640946 37.0 37.0 37.0 35.0 37.0 5 36.47234893486012 37.0 37.0 37.0 35.0 37.0 6 36.50567433816819 37.0 37.0 37.0 35.0 37.0 7 36.53314060671322 37.0 37.0 37.0 35.0 37.0 8 36.819333156073945 37.0 37.0 37.0 35.0 39.0 9 38.25571783055132 39.0 39.0 39.0 37.0 39.0 10-11 38.21951147116208 39.0 39.0 39.0 37.0 39.0 12-13 38.372756754208744 39.0 39.0 39.0 37.0 40.0 14-15 39.709350972852064 41.0 40.0 41.0 37.0 41.0 16-17 39.6790474983962 41.0 40.0 41.0 37.0 41.0 18-19 39.69043020264284 41.0 40.0 41.0 37.0 41.0 20-21 39.680847435794846 41.0 40.0 41.0 37.0 41.0 22-23 39.628062291618946 41.0 40.0 41.0 37.0 41.0 24-25 39.557902261325616 41.0 40.0 41.0 37.0 41.0 26-27 39.50041866895748 41.0 40.0 41.0 37.0 41.0 28-29 39.34332814502555 41.0 39.5 41.0 36.0 41.0 30-31 39.260696155732944 41.0 39.0 41.0 36.0 41.0 32-33 39.1556974393483 41.0 39.0 41.0 35.5 41.0 34-35 39.071415408262425 40.5 39.0 41.0 35.0 41.0 36-37 39.17264507091011 41.0 39.0 41.0 35.0 41.0 38-39 39.18712053689072 41.0 39.0 41.0 35.0 41.0 40-41 39.17985820040867 41.0 39.0 41.0 35.0 41.0 42-43 39.13079017421427 41.0 39.0 41.0 35.0 41.0 44-45 39.06215228528548 40.5 39.0 41.0 35.0 41.0 46-47 38.97513840740385 40.0 39.0 41.0 35.0 41.0 48-49 38.89896106188293 40.0 39.0 41.0 35.0 41.0 50-51 38.80440429692833 40.0 38.0 41.0 35.0 41.0 52-53 38.69821658358132 40.0 38.0 41.0 35.0 41.0 54-55 38.57422062830635 40.0 38.0 41.0 35.0 41.0 56-57 38.40452132160351 40.0 37.5 41.0 34.5 41.0 58-59 38.243272154805624 40.0 37.0 41.0 34.0 41.0 60-61 38.04558273822781 40.0 36.5 41.0 34.0 41.0 62-63 37.7887882271596 39.0 36.0 41.0 34.0 41.0 64-65 37.49432965829746 39.0 35.5 40.5 33.5 41.0 66-67 37.17313983542897 38.0 35.0 40.0 33.0 41.0 68-69 36.865223951592306 37.5 35.0 40.0 33.0 41.0 70-71 36.531997236662036 37.0 35.0 39.5 33.0 41.0 72-73 36.182248631908806 36.5 35.0 39.0 32.5 40.5 74-75 35.723733162833 36.0 34.5 38.5 32.0 40.0 76-77 34.94272678579818 35.0 34.0 37.0 31.0 39.0 78-79 35.08630033524845 35.0 34.0 37.0 31.5 39.0 80-81 34.872170144486766 35.0 34.0 37.0 32.0 39.0 82-83 34.59914259913848 35.0 34.0 36.0 31.0 37.5 84-85 34.35712326402695 35.0 34.0 36.0 31.0 37.0 86-87 34.10905404218044 35.0 34.0 35.0 31.0 37.0 88-89 33.842802418577804 35.0 34.0 35.0 31.0 36.0 90-91 33.77849065534684 35.0 34.0 35.0 31.0 36.0 92-93 33.701144543608095 35.0 34.0 35.0 31.0 36.0 94-95 33.59884471523142 35.0 33.5 35.0 31.0 35.5 96-97 33.553448480713996 35.0 33.0 35.0 31.0 35.0 98-99 33.517924992296244 34.5 33.0 35.0 30.5 35.0 100-101 32.263518717656915 33.5 31.5 34.5 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 3.0 20 31.0 21 149.0 22 556.0 23 1904.0 24 4874.0 25 10047.0 26 17863.0 27 28356.0 28 40983.0 29 54905.0 30 71161.0 31 90036.0 32 114413.0 33 151320.0 34 221929.0 35 340231.0 36 647374.0 37 1564471.0 38 2335549.0 39 1022262.0 40 70127.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.004989096846494 0.0033439381839881926 25.571036368936845 30.420630596032677 2 14.330154233154898 24.251719209568705 38.016591502960836 23.401535054315563 3 15.73123780298102 24.929926063674333 33.38514120259072 25.95369493075393 4 12.751410722448101 23.463635716824655 37.35287527824453 26.432078282482706 5 17.35892114715615 36.500286364793396 32.139424889932215 14.001367598118241 6 27.979519614220667 37.318193709873576 20.34935620952004 14.352930466385722 7 26.246187695034457 32.88774441176193 22.350374395452103 18.515693497751506 8 24.364554273951608 31.855441124176593 22.18623675010039 21.59376785177141 9 23.798995540416286 20.497174202470465 23.749632836347683 31.954197420765567 10-11 24.565318153150045 26.082000889887375 28.670290098717693 20.68239085824489 12-13 24.91128069416937 24.2442084423098 28.48703956444275 22.357471299078078 14-15 22.396521610012634 26.678103092224646 26.5902418236137 24.335133474149018 16-17 21.54471889035568 28.886473346512098 27.531811222466175 22.03699654066605 18-19 21.646026010879503 27.946360810212028 29.28983740843397 21.11777577047449 20-21 22.367126754515347 27.253662601998784 29.192049204688452 21.187161438797414 22-23 22.27824238764843 26.93347590214168 28.96975890761021 21.81852280259968 24-25 21.901404440014698 27.233130942040834 29.17797935781219 21.68748526013228 26-27 21.810714638581132 27.48066342338144 29.01761342773171 21.69100851030571 28-29 21.86877328635513 27.264340902175704 29.057516039244796 21.809369772224375 30-31 22.001494858867517 27.219799503461562 29.031545639928314 21.747159997742603 32-33 21.814310992363385 27.566895597086422 28.883608536923035 21.73518487362716 34-35 22.03017774336805 27.32485284415102 28.837931407085332 21.807038005395604 36-37 21.926135384112467 27.378441287757898 28.888563450453393 21.806859877676242 38-39 21.87112426113574 27.63044972364558 28.80948397048381 21.688942044734873 40-41 22.107132307708984 27.300744422252993 28.619577435059902 21.97254583497812 42-43 21.996610262244975 27.389887527437118 28.61355693485302 21.999945275464892 44-45 22.04798901762889 27.645680946373417 28.26130674776051 22.045023288237175 46-47 22.21253662844901 27.407442971853392 28.04105473877689 22.338965660920714 48-49 21.979470280823097 27.73929054955357 28.077291801202282 22.203947368421055 50-51 22.095964684023485 27.964587560934206 27.780727426604606 22.1587203284377 52-53 22.281273960236778 27.631175053248043 27.539608401135695 22.547942585379488 54-55 22.19812472290358 27.423213403642716 27.847266310111884 22.53139556334182 56-57 22.107752352383798 27.42726548367646 27.950360521502084 22.514621642437664 58-59 22.079259302363006 27.00526199876675 28.099702881866722 22.815775817003516 60-61 22.062713791500013 27.046491441893878 28.390277683937587 22.500517082668527 62-63 21.821191720841814 27.584657068607942 28.30687467676465 22.28727653378559 64-65 21.643838987155544 27.52609717908936 28.094881644007348 22.735182189747746 66-67 21.621186587819547 28.11367057838241 27.70264423813463 22.562498595663406 68-69 21.695830313001913 28.43608786183639 27.389356854031043 22.47872497113065 70-71 21.76993702310514 27.842388163194045 27.38075206405283 23.006922749647988 72-73 21.658125369797894 27.558092461467375 27.36374814943244 23.420034019302292 74-75 21.998607804100406 27.498835657385847 27.371593134361017 23.130963404152734 76-77 22.423547598219827 27.162472887323673 27.14033535865673 23.273644155799772 78-79 22.407767077925424 27.185996499524123 26.75287206182473 23.653364360725725 80-81 22.386953689064374 27.64160275545995 26.55059563091664 23.420847924559034 82-83 22.42947864142327 27.49679795296186 26.64212296428617 23.4316004413287 84-85 22.421527118636767 27.600855754498472 26.710234591177812 23.267382535686952 86-87 22.736728956101928 27.863324090572338 26.563744132699135 22.836202820626603 88-89 22.84335536550543 27.540178355153618 26.872291080229115 22.744175199111837 90-91 22.614580377886153 27.47690769205835 27.076798748414888 22.831713181640612 92-93 22.43232477119632 27.172214471608903 27.059747924172267 23.335712833022505 94-95 22.297651642781823 27.025406199336256 27.593372315837488 23.083569842044433 96-97 21.965050681798125 27.282322637159723 27.87356712163524 22.87905955940691 98-99 22.42910386611045 27.92850689537 27.96672208727876 21.675667151240795 100-101 22.96772694324599 30.17540909964659 24.940195261112386 21.91666869599504 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1770.0 1 1502.5 2 1788.5 3 2501.5 4 3424.5 5 5329.5 6 6920.5 7 8440.5 8 9732.5 9 10015.0 10 9364.0 11 8559.0 12 9342.0 13 12141.5 14 19225.5 15 29745.0 16 38827.0 17 43858.0 18 44228.5 19 40947.0 20 36134.0 21 31488.5 22 28569.0 23 28928.0 24 32965.0 25 40475.5 26 50682.5 27 62309.0 28 75973.5 29 90933.0 30 106008.0 31 121475.5 32 137355.0 33 153039.5 34 168671.0 35 183966.0 36 199439.5 37 213033.0 38 224070.5 39 234812.0 40 244975.5 41 253715.0 42 258635.0 43 263249.5 44 268749.5 45 272621.5 46 274705.0 47 274331.0 48 273238.5 49 271910.5 50 268850.0 51 262410.5 52 252801.5 53 240526.5 54 226172.0 55 211140.0 56 193619.5 57 174500.0 58 156085.0 59 136139.5 60 114246.0 61 93561.0 62 74808.0 63 57703.5 64 43069.0 65 32069.5 66 24225.0 67 18507.0 68 14286.0 69 10679.5 70 7732.5 71 5645.5 72 4010.5 73 2813.0 74 1999.5 75 1299.5 76 825.0 77 514.5 78 322.0 79 203.0 80 126.0 81 78.0 82 55.5 83 44.0 84 34.0 85 23.5 86 17.0 87 17.0 88 14.0 89 8.5 90 3.5 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0020917589851728166 2 0.003697404966749134 3 1.473069707868181E-5 4 2.946139415736362E-5 5 1.473069707868181E-5 6 1.473069707868181E-5 7 1.473069707868181E-5 8 4.419209123604543E-5 9 2.7988324449495437E-4 10-11 6.702467170800223E-4 12-13 0.0 14-15 2.946139415736362E-5 16-17 0.00146570435932884 18-19 1.473069707868181E-5 20-21 5.155868534780237E-5 22-23 9.649524838245237E-4 24-25 0.00514234231924501 26-27 0.05334711313560093 28-29 0.3628764135934408 30-31 0.33710637676595917 32-33 0.33003166064182715 34-35 0.15999755447996863 36-37 0.052399765419568145 38-39 0.04784284946466586 40-41 0.030236866491366088 42-43 0.02836230461039377 44-45 0.01658393169865697 46-47 0.012665227775361616 48-49 0.012519594489789131 50-51 0.010407131704961508 52-53 0.007888561396460143 54-55 0.0021427935480881617 56-57 0.0054626284172897095 58-59 0.005105243322714322 60-61 0.007042492249677596 62-63 0.0022548229137511777 64-65 4.208943616667546E-4 66-67 8.088913335382525E-4 68-69 0.0018400132414943943 70-71 0.004275228724736774 72-73 0.0021629815884818956 74-75 0.0013685460515746354 76-77 6.526148947843104E-4 78-79 3.211276196744998E-4 80-81 0.0010969626333281292 82-83 0.001100469687562456 84-85 4.128339669736416E-4 86-87 0.0033595703672455327 88-89 0.002215394435811658 90-91 0.006193829995293621 92-93 0.012731866605928987 94-95 0.0011219194680452402 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 98.0 20-21 391.0 22-23 775.0 24-25 1892.0 26-27 2673.0 28-29 5813.0 30-31 13160.0 32-33 18602.0 34-35 27619.0 36-37 35642.0 38-39 27252.0 40-41 43795.0 42-43 52875.0 44-45 63679.0 46-47 62224.0 48-49 54397.0 50-51 43432.0 52-53 8747.0 54-55 7866.0 56-57 8087.0 58-59 13215.0 60-61 52156.0 62-63 52896.0 64-65 57012.0 66-67 59567.0 68-69 60093.0 70-71 59259.0 72-73 58374.0 74-75 59248.0 76-77 61087.0 78-79 63040.0 80-81 63615.0 82-83 62961.0 84-85 63925.0 86-87 66475.0 88-89 70165.0 90-91 74033.0 92-93 76734.0 94-95 88420.0 96-97 165601.0 98-99 723650.0 100-101 4258000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.70554566376137 #Duplication Level Percentage of deduplicated Percentage of total 1 90.41314629005626 78.39321184256809 2 6.976285377302455 12.097652606902573 3 1.5604592506570285 4.0590141244284546 4 0.5135421939863136 1.7810782460379406 5 0.21892343849544352 0.9490938096667165 6 0.10864644471011782 0.5652149563811066 7 0.06113176181162974 0.37103239356851114 8 0.03769621333655318 0.2614776597442721 9 0.027207867937134523 0.21231657322531255 >10 0.0805106263731605 1.0882708427171044 >50 0.0019038604371329928 0.10693132145213786 >100 4.962538364070692E-4 0.08578631053629972 >500 5.042106033500846E-5 0.028919312771446475 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 7.365348539340904E-5 0.0 0.0 0.0 3 0.0 7.365348539340904E-5 0.0 0.0 0.0 4 0.0 7.365348539340904E-5 0.0 0.0 0.0 5 0.0 8.838418247209085E-5 0.0 0.0 0.0 6 2.9461394157363616E-5 8.838418247209085E-5 0.0 0.0 0.0 7 2.9461394157363616E-5 8.838418247209085E-5 0.0 2.9461394157363616E-5 0.0 8 4.4192091236045425E-5 1.0311487955077266E-4 0.0 2.9461394157363616E-5 0.0 9 4.4192091236045425E-5 1.9149906202286352E-4 0.0 2.9461394157363616E-5 0.0 10-11 4.4192091236045425E-5 1.9149906202286352E-4 0.0 4.4192091236045425E-5 0.0 12-13 4.4192091236045425E-5 1.9149906202286352E-4 0.0 6.628813685406813E-5 0.0 14-15 4.4192091236045425E-5 3.314406842703407E-4 0.0 1.1784557662945447E-4 1.4730697078681808E-5 16-17 5.892278831472723E-5 3.8299812404572704E-4 0.0 1.473069707868181E-4 2.9461394157363616E-5 18-19 5.892278831472723E-5 3.8299812404572704E-4 0.0 4.5665160943913607E-4 2.9461394157363616E-5 20-21 5.892278831472723E-5 3.8299812404572704E-4 0.0 0.0012079171604519082 2.9461394157363616E-5 22-23 8.838418247209085E-5 4.271902152817725E-4 0.0 0.0018928945746106123 2.9461394157363616E-5 24-25 8.838418247209085E-5 4.934783521358406E-4 0.0 0.0029461394157363615 4.4192091236045425E-5 26-27 8.838418247209085E-5 5.303050948325451E-4 0.0 0.007372713887880245 4.4192091236045425E-5 28-29 8.838418247209085E-5 5.303050948325451E-4 0.0 0.024423495756454437 4.4192091236045425E-5 30-31 8.838418247209085E-5 6.481506714619996E-4 0.0 0.03254747519534745 4.4192091236045425E-5 32-33 8.838418247209085E-5 6.702467170800223E-4 0.0 0.03662787828614232 4.4192091236045425E-5 34-35 9.574953101143175E-5 7.65996248091454E-4 0.0 0.04218135108480536 7.365348539340904E-5 36-37 1.0311487955077266E-4 8.691111276422268E-4 0.0 0.05186678441403865 7.365348539340904E-5 38-39 1.0311487955077266E-4 9.574953101143176E-4 0.0 0.09578635775412847 7.365348539340904E-5 40-41 1.0311487955077266E-4 0.0010237834469683858 0.0 0.2984439228140935 7.365348539340904E-5 42-43 1.0311487955077266E-4 0.001163725069215863 0.0 0.317792693426942 7.365348539340904E-5 44-45 1.0311487955077266E-4 0.0012815706458453174 0.0 0.3473792985094744 7.365348539340904E-5 46-47 1.0311487955077266E-4 0.0012815706458453174 0.0 0.3792859883818992 7.365348539340904E-5 48-49 1.0311487955077266E-4 0.0012815706458453174 0.0 0.4079887516397107 7.365348539340904E-5 50-51 1.1048022809011357E-4 0.0013404934341600446 0.0 0.4440715941339418 7.365348539340904E-5 52-53 1.1784557662945447E-4 0.0013404934341600446 0.0 0.677177510055542 7.365348539340904E-5 54-55 1.1784557662945447E-4 0.0013552241312387264 0.0 1.2958667873601781 7.365348539340904E-5 56-57 1.1784557662945447E-4 0.00138468552539609 0.0 1.9698771975438034 7.365348539340904E-5 58-59 1.1784557662945447E-4 0.00138468552539609 0.0 2.6460530201979955 7.365348539340904E-5 60-61 1.1784557662945447E-4 0.0014509736622501583 0.0 3.0890713694908114 7.365348539340904E-5 62-63 1.1784557662945447E-4 0.0015025311020255446 0.0 3.098786264214202 7.365348539340904E-5 64-65 1.1784557662945447E-4 0.001679299466969726 0.0 3.1059306522973626 7.365348539340904E-5 66-67 1.4730697078681808E-4 0.0016940301640484081 0.0 3.1124489857546793 7.365348539340904E-5 68-69 1.4730697078681808E-4 0.0017161262096664308 0.0 3.118488571556939 7.365348539340904E-5 70-71 1.4730697078681808E-4 0.0017234915582057717 0.0 3.123555931352006 7.365348539340904E-5 72-73 1.4730697078681808E-4 0.0017308569067451126 0.0 3.127673161185497 8.838418247209085E-5 74-75 1.4730697078681808E-4 0.001775048997981158 0.0 3.1309728373311216 8.838418247209085E-5 76-77 1.4730697078681808E-4 0.0018707985289925897 0.0 3.134397724401915 8.838418247209085E-5 78-79 1.4730697078681808E-4 0.0019149906202286353 0.0 3.137822611472709 8.838418247209085E-5 80-81 1.4730697078681808E-4 0.0019149906202286353 0.0 3.1389863365419246 8.838418247209085E-5 82-83 1.4730697078681808E-4 0.0019223559687679762 0.0 3.1393914307115884 8.838418247209085E-5 84-85 1.4730697078681808E-4 0.0019444520143859988 0.0 3.1396786793046227 8.838418247209085E-5 86-87 1.4730697078681808E-4 0.0019591827114646804 0.0 3.13981862092687 8.838418247209085E-5 88-89 1.4730697078681808E-4 0.0020181054997794076 0.0 3.139877543715185 8.838418247209085E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8865 0.0 54.75285 1 GTATCAA 16465 0.0 38.885937 1 TATCTCG 6930 0.0 36.386036 94-95 ATCAACG 19880 0.0 31.637506 3 TCAACGC 20540 0.0 30.684095 4 CAACGCA 21135 0.0 29.800236 5 TATCAAC 21445 0.0 29.633211 2 AACGCAG 21410 0.0 29.437672 6 ACGCAGA 22000 0.0 28.608883 7 GCCGTCT 3280 0.0 25.7691 90-91 ATGCCGT 3365 0.0 24.644306 88-89 TCGTATG 3355 0.0 24.569584 84-85 ATCTCGT 5580 0.0 24.264439 94-95 TCTCGTA 3375 0.0 24.188414 82-83 CGCAGAG 26105 0.0 24.11015 8 CTATCTC 11280 0.0 22.792505 94-95 GTACATG 21440 0.0 21.610125 1 TATGCCG 2980 0.0 21.39176 88-89 GCTATCT 11075 0.0 21.314192 92-93 ACATGGG 20840 0.0 21.296284 3 >>END_MODULE