##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139627_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7322062 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.94609865363063 34.0 31.0 34.0 31.0 34.0 2 33.07810313542824 34.0 33.0 34.0 31.0 34.0 3 33.1352815641277 34.0 33.0 34.0 31.0 34.0 4 36.48480810460223 37.0 37.0 37.0 35.0 37.0 5 36.45113029635641 37.0 37.0 37.0 35.0 37.0 6 36.47983464220871 37.0 37.0 37.0 35.0 37.0 7 36.45511209820403 37.0 37.0 37.0 35.0 37.0 8 36.4427385345822 37.0 37.0 37.0 35.0 37.0 9 38.24067755776993 39.0 39.0 39.0 37.0 39.0 10-11 38.18308073600032 39.0 39.0 39.0 37.0 39.0 12-13 38.15574793002299 39.0 39.0 39.0 37.0 39.0 14-15 39.67264856539046 41.0 40.0 41.0 37.0 41.0 16-17 39.64257390882514 41.0 40.0 41.0 37.0 41.0 18-19 39.653788236155336 41.0 40.0 41.0 37.0 41.0 20-21 39.64727812511303 41.0 40.0 41.0 37.0 41.0 22-23 39.59111338611185 41.0 40.0 41.0 37.0 41.0 24-25 39.52661652977831 41.0 40.0 41.0 37.0 41.0 26-27 39.47543958202198 41.0 39.5 41.0 36.5 41.0 28-29 39.30267472399497 41.0 39.0 41.0 36.0 41.0 30-31 39.217176083806294 41.0 39.0 41.0 36.0 41.0 32-33 39.11219294603532 41.0 39.0 41.0 35.0 41.0 34-35 39.01460520280978 40.5 39.0 41.0 35.0 41.0 36-37 39.113018268537196 40.5 39.0 41.0 35.0 41.0 38-39 39.13746765313343 41.0 39.0 41.0 35.0 41.0 40-41 39.132476168858474 41.0 39.0 41.0 35.0 41.0 42-43 39.09077870782856 41.0 39.0 41.0 35.0 41.0 44-45 39.025139328440424 40.0 39.0 41.0 35.0 41.0 46-47 38.93906389046428 40.0 39.0 41.0 35.0 41.0 48-49 38.86365983092022 40.0 38.0 41.0 35.0 41.0 50-51 38.76982830818769 40.0 38.0 41.0 35.0 41.0 52-53 38.66507410318951 40.0 38.0 41.0 35.0 41.0 54-55 38.5484429436935 40.0 38.0 41.0 35.0 41.0 56-57 38.37666171981856 40.0 37.5 41.0 34.0 41.0 58-59 38.22029007525585 40.0 37.0 41.0 34.0 41.0 60-61 38.0301404821992 40.0 36.5 41.0 34.0 41.0 62-63 37.7843273319178 39.0 36.0 41.0 34.0 41.0 64-65 37.495619962121424 39.0 35.5 40.5 33.5 41.0 66-67 37.17775492149269 38.5 35.0 40.0 33.0 41.0 68-69 36.87126454349706 37.5 35.0 40.0 33.0 41.0 70-71 36.54710459048767 37.0 35.0 39.5 33.0 41.0 72-73 36.2072992855132 36.5 35.0 39.0 32.0 41.0 74-75 35.83244770538211 36.0 35.0 39.0 32.0 40.0 76-77 34.88159757384304 35.0 34.0 37.0 30.5 39.0 78-79 35.08826994197427 35.0 34.0 37.0 31.0 39.0 80-81 34.88964620048576 35.0 34.0 37.0 31.0 39.0 82-83 34.61307626835752 35.0 34.0 36.0 31.0 38.5 84-85 34.36581118103608 35.0 34.0 36.0 31.0 37.0 86-87 34.12485079539421 35.0 34.0 35.5 31.0 37.0 88-89 33.81902130578189 35.0 34.0 35.0 31.0 36.5 90-91 33.75577022572081 35.0 34.0 35.0 31.0 36.0 92-93 33.6802247219141 35.0 34.0 35.0 31.0 36.0 94-95 33.573354343458995 35.0 33.5 35.0 30.5 35.5 96-97 33.523888768014025 35.0 33.0 35.0 30.0 35.0 98-99 33.51547324047304 34.5 33.0 35.0 30.0 35.0 100-101 32.43619454472774 34.0 31.5 34.5 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 7.0 20 26.0 21 165.0 22 621.0 23 2082.0 24 5469.0 25 11297.0 26 20102.0 27 31907.0 28 45672.0 29 61406.0 30 79403.0 31 100151.0 32 127909.0 33 168284.0 34 245761.0 35 376025.0 36 713329.0 37 1715072.0 38 2512653.0 39 1050520.0 40 54200.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.42568363939011 21.19204945273613 15.299720215425655 24.082546692448112 2 13.943149831862062 21.643950756023184 41.18439147806094 23.228507934053816 3 16.96138328246879 26.669796021940268 31.33335937335685 25.03546132223409 4 12.093587844517023 18.732851483639447 39.01033615940428 30.163224512439257 5 13.010010021767094 37.892345079842265 35.737036916649984 13.360607981740664 6 29.377639796002818 38.28013201745629 18.8479010420835 13.494327144457394 7 25.922397270058628 32.99922890573721 23.385570895193183 17.69280292901098 8 24.418353736966445 36.20156453195835 21.400447032543564 17.979634698531644 9 25.454746839030264 16.769654799802407 21.54781706357558 36.22778129759175 10-11 23.873807832073375 26.964169321050274 29.095094480577906 20.066928366298452 12-13 24.794600209613087 24.664589018776407 29.07107314852018 21.469737623090328 14-15 22.04951965716761 25.96789674821109 26.882188378082567 25.10039521653873 16-17 21.475667102047073 29.01729928620786 27.558357238055248 21.94867637368982 18-19 21.520467868204342 28.10063613228077 29.38151848482026 20.99737751469463 20-21 22.368036032204508 27.234638521491945 29.297670159000518 21.099655287303033 22-23 22.120195311627654 27.132675633667702 29.134833576242443 21.612295478462197 24-25 21.856742767052573 27.315434916741673 29.223253109973236 21.604569206232522 26-27 21.777392007364227 27.489225881498907 29.149614023080993 21.583768088055873 28-29 21.705406732096165 27.423184489292158 29.24592111893562 21.62548765967606 30-31 21.91764353713847 27.29029153009704 29.1899126824037 21.60215225036079 32-33 21.71838994500625 27.548254550052814 29.011264176539203 21.72209132840173 34-35 21.88421569387386 27.481914408013157 29.01235907638512 21.62151082172786 36-37 21.843455884664724 27.43968222544456 29.026447469388078 21.690414420502634 38-39 21.74064544002439 27.614956067702785 28.9686004122077 21.67579808006512 40-41 21.90655292992551 27.4191041731916 28.911351329482432 21.76299156740046 42-43 21.962528759126446 27.51323420280632 28.664884663215744 21.859352374851486 44-45 21.904049718721424 27.650726236991414 28.465991037081 21.979233007206165 46-47 22.05760100959516 27.564015430093836 28.156766262122723 22.22161729818828 48-49 21.98786855197677 27.808213251624007 28.113626496632154 22.090291699767064 50-51 21.961833207413825 27.923841493194157 27.978360488687127 22.13596481070489 52-53 22.11411151064008 27.803808953542337 27.741578860907207 22.340500674910377 54-55 22.116612962006275 27.58944766339787 27.843975249851955 22.449964124743904 56-57 22.151116570980175 27.404980889641905 28.025659751866584 22.418242787511332 58-59 21.87376123624025 27.24476868316929 28.27272740649403 22.60874267409643 60-61 22.017051325807454 27.144199644057927 28.382948024663218 22.4558010054714 62-63 21.79526847163528 27.651303875758 28.36887553316278 22.18455211944395 64-65 21.468052773950948 27.77548138649888 28.237986190955883 22.518479648594298 66-67 21.56746962680541 28.3066529158684 27.7048367636366 22.42104069368959 68-69 21.599511833514377 28.481409734045855 27.48269991023195 22.43637852220782 70-71 21.61865339136938 28.052918703365826 27.491542605779006 22.836885299485786 72-73 21.551581222469267 27.768896695791558 27.372084058873792 23.30743802286539 74-75 21.88939879137964 27.51631479443774 27.40728214509371 23.187004269088913 76-77 22.247259685722266 27.34304434941456 27.335979111804633 23.073716853058546 78-79 22.41391776278256 27.222802954780168 26.796815853337137 23.56646342910014 80-81 22.31995043837732 27.617212037937723 26.673388269953495 23.389449253731463 82-83 22.34351105653641 27.641617566633304 26.76596052047755 23.248910856352737 84-85 22.325086474712148 27.64426436590638 26.72068187909153 23.309967280289946 86-87 22.591016726617504 27.907802913376706 26.71422125344154 22.78695910656425 88-89 22.779168146571106 27.628917640666202 26.916767094863758 22.675147117898938 90-91 22.529030240135086 27.676404400094007 27.149777391986113 22.644787967784797 92-93 22.396376460144683 27.22116261509086 27.098338654034382 23.28412227073007 94-95 22.22051642283157 27.147687218673266 27.64091217027369 22.990884188221475 96-97 21.921234286619185 27.38681489786768 27.86155099769674 22.830399817816403 98-99 22.154206601242965 27.590858152535812 28.149737975887295 22.105197270333925 100-101 22.84482144993325 30.475931655407713 25.4238602630034 21.255386631655643 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2722.0 1 2260.5 2 2409.0 3 3185.5 4 4218.5 5 6352.0 6 8129.5 7 9783.5 8 11051.5 9 11206.5 10 10462.5 11 9587.0 12 10640.5 13 14346.0 14 22898.0 15 34522.5 16 43910.5 17 48837.0 18 48959.0 19 45642.0 20 40691.5 21 35515.5 22 32176.0 23 32685.0 24 37199.0 25 45852.5 26 57801.5 27 71306.0 28 86960.5 29 103879.0 30 119412.5 31 135751.0 32 153413.0 33 171110.0 34 188057.0 35 203796.5 36 223046.0 37 238734.5 38 248814.5 39 258972.5 40 269274.5 41 277136.0 42 280219.0 43 284595.5 44 290914.5 45 295140.5 46 296791.0 47 296569.0 48 295121.5 49 292022.5 50 286437.5 51 278183.0 52 266233.5 53 250892.0 54 234434.0 55 218782.5 56 200541.0 57 180002.0 58 159953.0 59 138687.0 60 116479.5 61 94780.0 62 74667.5 63 57101.0 64 42417.5 65 31495.5 66 23903.0 67 18131.5 68 13752.5 69 10301.0 70 7529.5 71 5315.0 72 3655.0 73 2493.5 74 1663.0 75 1120.5 76 762.5 77 464.5 78 286.0 79 184.0 80 122.5 81 86.5 82 69.0 83 50.0 84 32.0 85 20.0 86 14.0 87 11.0 88 7.5 89 6.0 90 4.5 91 3.0 92 2.5 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.005394655221438988 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 2.8680445481068037E-4 10-11 7.443258470086704E-4 12-13 0.0 14-15 0.0 16-17 0.0015364524364857878 18-19 0.0 20-21 0.0 22-23 8.263462683158625E-4 24-25 0.003032712103205652 26-27 0.008021182480808261 28-29 0.3696835560707802 30-31 0.3390883076765386 32-33 0.33805961297028814 34-35 0.19031998514575726 36-37 0.05056903284203835 38-39 0.04923139575486334 40-41 0.028800236538504453 42-43 0.028334042562155833 44-45 0.01675653414533354 46-47 0.011509719704346846 48-49 0.011655855872381233 50-51 0.010289528995171786 52-53 0.008579440305448589 54-55 0.0012913311254016792 56-57 0.004863683871715709 58-59 0.003950645040281498 60-61 0.007240251547446933 62-63 0.0022557380056342827 64-65 1.6524976262247167E-4 66-67 7.889325507425865E-4 68-69 0.0017631330414198281 70-71 0.004205670777767941 72-73 0.002221851044446018 74-75 0.0015250746772965688 76-77 7.344599843049094E-4 78-79 2.1787510285520482E-4 80-81 0.0012078500131027243 82-83 0.0014611130941158252 84-85 8.348993958751462E-6 86-87 0.0035904161402131 88-89 0.0017022888428310928 90-91 0.005088469147493309 92-93 0.01431231942565049 94-95 0.0015441213025993096 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 95.0 20-21 395.0 22-23 886.0 24-25 1974.0 26-27 2891.0 28-29 5179.0 30-31 14120.0 32-33 19172.0 34-35 28773.0 36-37 37789.0 38-39 29258.0 40-41 47985.0 42-43 56756.0 44-45 69432.0 46-47 68282.0 48-49 59555.0 50-51 52499.0 52-53 10012.0 54-55 9182.0 56-57 9155.0 58-59 9382.0 60-61 58597.0 62-63 58757.0 64-65 63453.0 66-67 69133.0 68-69 67222.0 70-71 65309.0 72-73 63298.0 74-75 64264.0 76-77 65818.0 78-79 69183.0 80-81 70185.0 82-83 67966.0 84-85 69832.0 86-87 72360.0 88-89 76332.0 90-91 80289.0 92-93 82795.0 94-95 90862.0 96-97 135337.0 98-99 669749.0 100-101 4728549.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.32682398161296 #Duplication Level Percentage of deduplicated Percentage of total 1 90.39021856865148 78.031004880355 2 6.879645663956774 11.877959205765265 3 1.5770528845061544 4.0842590031137345 4 0.5560991979443021 1.9202511030901563 5 0.23376411745922757 1.009005691055992 6 0.12274718595937187 0.6357824829931806 7 0.06819075442535281 0.4120683878115579 8 0.04451894667593522 0.3074543418832219 9 0.03151323025700628 0.24483933733397595 >10 0.09411688192682613 1.251743533761754 >50 0.0016340370566079398 0.09116162050479312 >100 3.7791173110078693E-4 0.05675025104067879 >500 9.649574434823872E-5 0.05533304033054338 >1k 2.4123705517791533E-5 0.022387120960200544 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 6.82867749549239E-5 0.0 0.0 0.0 5 0.0 6.82867749549239E-5 0.0 0.0 0.0 6 2.731470998196956E-5 6.82867749549239E-5 0.0 0.0 0.0 7 2.731470998196956E-5 6.82867749549239E-5 0.0 0.0 0.0 8 2.731470998196956E-5 9.560148493689347E-5 0.0 0.0 1.365735499098478E-5 9 2.731470998196956E-5 1.9120296987378693E-4 0.0 1.365735499098478E-5 1.365735499098478E-5 10-11 2.731470998196956E-5 1.9120296987378693E-4 0.0 2.0486032486477172E-5 1.365735499098478E-5 12-13 2.731470998196956E-5 1.9120296987378693E-4 0.0 2.731470998196956E-5 1.365735499098478E-5 14-15 2.731470998196956E-5 2.116890023602641E-4 0.0 4.097206497295434E-5 1.365735499098478E-5 16-17 2.731470998196956E-5 2.1851767985575648E-4 0.0 6.82867749549239E-5 1.365735499098478E-5 18-19 4.097206497295434E-5 2.3900371234223365E-4 0.0 1.4340222740534018E-4 1.365735499098478E-5 20-21 4.097206497295434E-5 2.594897448287108E-4 0.0 1.9803164736927932E-4 2.0486032486477172E-5 22-23 4.097206497295434E-5 3.0729048729715753E-4 0.0 7.033537820357162E-4 2.731470998196956E-5 24-25 4.097206497295434E-5 3.550912297656043E-4 0.0 0.002151033411080103 2.731470998196956E-5 26-27 4.097206497295434E-5 3.687485847565891E-4 0.0 0.005421969931420958 2.731470998196956E-5 28-29 4.097206497295434E-5 3.8240593974757386E-4 0.0 0.020158255966693538 2.731470998196956E-5 30-31 4.097206497295434E-5 4.3703535971151297E-4 0.0 0.027813203439140503 2.731470998196956E-5 32-33 4.097206497295434E-5 4.3703535971151297E-4 0.0 0.03156214738416583 2.731470998196956E-5 34-35 4.780074246844673E-5 4.916647796754521E-4 0.0 0.03664951211830766 2.731470998196956E-5 36-37 5.462941996393912E-5 5.531228771348836E-4 0.0 0.04368987861616031 2.731470998196956E-5 38-39 5.462941996393912E-5 5.736089096213607E-4 0.0 0.06042696715761216 4.097206497295434E-5 40-41 6.82867749549239E-5 6.692103945582542E-4 0.0 0.2881428755997969 5.462941996393912E-5 42-43 6.82867749549239E-5 6.965251045402238E-4 0.0 0.30515993991856394 5.462941996393912E-5 44-45 7.511545245041629E-5 8.194412994590868E-4 0.0 0.3336218677197762 5.462941996393912E-5 46-47 8.194412994590867E-5 9.150427843959803E-4 0.0 0.3673145624825357 5.462941996393912E-5 48-49 8.194412994590867E-5 9.150427843959803E-4 0.0 0.3950253357592438 5.462941996393912E-5 50-51 8.877280744140108E-5 9.901582368463965E-4 0.0 0.422654164906006 5.462941996393912E-5 52-53 9.560148493689347E-5 9.96986914341889E-4 0.0 0.5857024974658778 5.462941996393912E-5 54-55 1.0243016243238585E-4 0.0010038155918373813 0.0 1.1900199697844678 5.462941996393912E-5 56-57 1.0925883992787824E-4 0.0010652736892968128 0.0 1.8571681037390833 5.462941996393912E-5 58-59 1.1608751742337063E-4 0.0010652736892968128 0.0 2.550818335053705 5.462941996393912E-5 60-61 1.2291619491886302E-4 0.0010721023667923052 0.0 3.074058919468314 5.462941996393912E-5 62-63 1.2291619491886302E-4 0.0010789310442877976 0.0 3.085100890978525 5.462941996393912E-5 64-65 1.365735499098478E-4 0.0012018472392066606 0.0 3.0926124362235665 5.462941996393912E-5 66-67 1.365735499098478E-4 0.0012155045941976454 0.0 3.0989357915843927 5.462941996393912E-5 68-69 1.4340222740534018E-4 0.001242819304179615 0.0 3.1047743108430383 5.462941996393912E-5 70-71 1.5705958239632496E-4 0.001242819304179615 0.0 3.109704615994784 6.82867749549239E-5 72-73 1.8437429237829454E-4 0.001263305336666092 0.0 3.114273001239268 8.194412994590867E-5 74-75 1.9120296987378693E-4 0.001331592111621016 0.0 3.1179400010543477 8.194412994590867E-5 76-77 1.9803164736927932E-4 0.001365735499098478 0.0 3.1212109375746886 8.877280744140108E-5 78-79 2.048603248647717E-4 0.001365735499098478 0.0 3.123921922540399 9.560148493689347E-5 80-81 2.048603248647717E-4 0.001365735499098478 0.0 3.125212542587047 9.560148493689347E-5 82-83 2.048603248647717E-4 0.001365735499098478 0.0 3.1257451794316955 9.560148493689347E-5 84-85 2.048603248647717E-4 0.0013793928540894627 0.0 3.1261344140489387 9.560148493689347E-5 86-87 2.048603248647717E-4 0.0013930502090804475 0.0 3.12622318685638 9.560148493689347E-5 88-89 2.116890023602641E-4 0.0014613369840353716 0.0 3.126250501566362 9.560148493689347E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10325 0.0 55.030632 1 GTATCAA 18890 0.0 36.773346 1 TATCTCG 8450 0.0 32.145157 94-95 TCAACGC 23495 0.0 28.919674 4 ATCAACG 23765 0.0 28.55447 3 TATCAAC 24180 0.0 28.244646 2 CAACGCA 24065 0.0 28.198889 5 AACGCAG 24900 0.0 27.305439 6 GTGGTAT 4670 0.0 25.502134 1 TGGTATC 4610 0.0 24.04915 2 ACGCAGA 28630 0.0 23.717756 7 CGCAGAG 29170 0.0 23.248995 8 GCTATCT 12820 0.0 22.735588 94-95 CTATCTC 13080 0.0 21.56428 94-95 ATCTCGT 6920 0.0 20.234196 94-95 GCAGAGT 33460 0.0 20.08698 9 GTACATG 23260 0.0 20.052418 1 TACATGG 22945 0.0 19.685978 2 GAGTACT 19870 0.0 19.669722 12-13 CGCTATC 12780 0.0 19.430155 92-93 >>END_MODULE