##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139626_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6183526 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.915097631998314 34.0 31.0 34.0 31.0 34.0 2 33.04901944295213 34.0 33.0 34.0 31.0 34.0 3 33.10685424464941 34.0 33.0 34.0 31.0 34.0 4 36.46667952879959 37.0 37.0 37.0 35.0 37.0 5 36.4309230688122 37.0 37.0 37.0 35.0 37.0 6 36.46012533949077 37.0 37.0 37.0 35.0 37.0 7 36.435718552812745 37.0 37.0 37.0 35.0 37.0 8 36.4215683737725 37.0 37.0 37.0 35.0 37.0 9 38.21346655613642 39.0 39.0 39.0 37.0 39.0 10-11 38.156200119478754 39.0 39.0 39.0 37.0 39.0 12-13 38.12823112573635 39.0 39.0 39.0 37.0 39.0 14-15 39.63300016851227 41.0 40.0 41.0 37.0 41.0 16-17 39.606913838479855 41.0 40.0 41.0 37.0 41.0 18-19 39.61789567958475 41.0 40.0 41.0 37.0 41.0 20-21 39.613959290997215 41.0 40.0 41.0 37.0 41.0 22-23 39.5559338965934 41.0 40.0 41.0 37.0 41.0 24-25 39.49233832179267 41.0 39.5 41.0 37.0 41.0 26-27 39.44267915032501 41.0 39.0 41.0 36.5 41.0 28-29 39.27203471614666 41.0 39.0 41.0 36.0 41.0 30-31 39.18721918251144 41.0 39.0 41.0 36.0 41.0 32-33 39.083683870227226 41.0 39.0 41.0 35.0 41.0 34-35 38.9883583794658 40.0 39.0 41.0 35.0 41.0 36-37 39.08179281243518 40.5 39.0 41.0 35.0 41.0 38-39 39.10768673610083 41.0 39.0 41.0 35.0 41.0 40-41 39.10325066775985 41.0 39.0 41.0 35.0 41.0 42-43 39.06290540663962 40.5 39.0 41.0 35.0 41.0 44-45 38.997960836104596 40.0 39.0 41.0 35.0 41.0 46-47 38.91190127579495 40.0 38.5 41.0 35.0 41.0 48-49 38.83908853811273 40.0 38.0 41.0 35.0 41.0 50-51 38.75118806867978 40.0 38.0 41.0 35.0 41.0 52-53 38.64654348645777 40.0 38.0 41.0 35.0 41.0 54-55 38.52831564323687 40.0 38.0 41.0 35.0 41.0 56-57 38.36086923185507 40.0 37.5 41.0 34.0 41.0 58-59 38.201848953995366 40.0 37.0 41.0 34.0 41.0 60-61 38.013213542680724 40.0 36.5 41.0 34.0 41.0 62-63 37.76696725662803 39.0 36.0 41.0 34.0 41.0 64-65 37.47508697536969 39.0 35.5 40.5 33.0 41.0 66-67 37.152526009293624 38.5 35.0 40.0 33.0 41.0 68-69 36.84793348315066 37.5 35.0 40.0 33.0 41.0 70-71 36.524799023856325 37.0 35.0 39.5 32.5 41.0 72-73 36.18555655880682 36.5 35.0 39.0 32.0 41.0 74-75 35.81747659172035 36.0 35.0 39.0 32.0 40.0 76-77 34.871230881152144 35.0 34.0 37.0 30.5 39.0 78-79 35.10667673062987 35.0 34.0 37.0 31.0 39.0 80-81 34.924655464199766 35.0 34.0 37.0 31.0 39.0 82-83 34.65065886177203 35.0 34.0 36.0 31.0 38.5 84-85 34.39915914584529 35.0 34.0 36.0 31.0 37.0 86-87 34.14315933869773 35.0 34.0 35.5 31.0 37.0 88-89 33.84328985824786 35.0 34.0 35.0 31.0 36.5 90-91 33.75839316878533 35.0 34.0 35.0 31.0 36.0 92-93 33.67099669242161 35.0 34.0 35.0 31.0 36.0 94-95 33.56149282845004 35.0 33.5 35.0 30.5 35.5 96-97 33.52345200423745 35.0 33.0 35.0 30.0 35.0 98-99 33.52464761912938 34.5 33.0 35.0 30.5 35.0 100-101 32.4697681808606 34.0 31.5 34.5 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 3.0 19 9.0 20 23.0 21 125.0 22 517.0 23 1893.0 24 4880.0 25 9593.0 26 17440.0 27 27358.0 28 39525.0 29 52368.0 30 67868.0 31 85560.0 32 108634.0 33 143207.0 34 209060.0 35 318573.0 36 594662.0 37 1413187.0 38 2061325.0 39 977287.0 40 50428.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.28413000675181 21.184809635280846 15.469364157175722 24.06169620079162 2 13.735003943745069 21.554826951506893 41.4333883910442 23.27678071370384 3 16.81429281841668 26.615061797275825 31.401182982198666 25.169462402108827 4 11.918848876652072 18.694967676204108 39.21172793835231 30.17445550879151 5 12.968153278267655 37.96818157927719 35.703858236200226 13.359806906254928 6 29.409018318839173 38.41211930088421 18.85007338047473 13.328788999801894 7 26.019883480700734 33.09361569654849 23.28471219894801 17.601788623802765 8 24.502880718864933 36.45366737359882 21.248410696421427 17.795041211114825 9 25.430726377324973 16.87500040430125 21.55064730246973 36.143625915904046 10-11 23.811138711534603 27.05951988200819 29.054141033851486 20.075200372605718 12-13 24.76166510822466 24.700437905492755 29.114100919119608 21.423796067162975 14-15 21.977718530727785 26.05118052424475 26.920434043758867 25.0506669012686 16-17 21.38971364917607 29.213691749415155 27.57863272529325 21.81796187611553 18-19 21.430167836279818 28.22982389012353 29.4619283560868 20.878079917509847 20-21 22.28494494320468 27.33191959908707 29.38513072324838 20.998004734459876 22-23 22.016211563040677 27.249254298021206 29.203399843035648 21.531134295902472 24-25 21.73803150769203 27.438720889096086 29.31125432086703 21.51199328234485 26-27 21.652430457402776 27.609268279501425 29.21701685060823 21.521284412487564 28-29 21.57032756628898 27.577895791633626 29.294680352577384 21.55709628950001 30-31 21.888480845083908 27.470494087031543 29.17408803618472 21.466937031699832 32-33 21.711673190413595 27.632604726092218 29.08357237449728 21.572149708996907 34-35 21.79745366698169 27.652517227432117 29.10977850636673 21.440250599219464 36-37 21.811425048915645 27.543709603136946 29.03726536623531 21.6075999817121 38-39 21.65801740008121 27.688539878729596 29.082533471168897 21.570909250020296 40-41 21.83258994871184 27.593154739004568 28.963919577118812 21.61033573516478 42-43 21.812198630910785 27.641925282960766 28.73407736443827 21.811798721690177 44-45 21.84834882746291 27.77064626416021 28.543051516737787 21.837953391639093 46-47 22.001550375882527 27.740105996402605 28.20110978116371 22.05723384655116 48-49 21.934081831425228 27.82952012147964 28.215701795397607 22.020696251697526 50-51 21.961369132912747 28.01531056632237 28.017394048244277 22.005926252520602 52-53 22.09423005592045 27.941903852791082 27.888373749359946 22.075492341928523 54-55 22.069711249415242 27.86343525339292 27.92633037757261 22.140523119619225 56-57 22.05503590806629 28.009353654806812 27.848034613903334 22.08757582322357 58-59 22.007540191146703 27.9814547713487 27.970735347145116 22.04026969035948 60-61 22.116500387806447 28.018027710492472 27.85430721743135 22.011164684269733 62-63 22.066623606597688 28.101798289093242 27.812100823762187 22.019477280546884 64-65 22.052180223302294 28.001169150730192 27.816020022164384 22.13063060380313 66-67 22.129870716322664 28.058464789412717 27.638358074904474 22.173306419360145 68-69 22.069071849650022 28.029584990509253 27.73622780337972 22.16511535646101 70-71 22.06116586957818 27.805616537971385 27.807846200169056 22.325371392281383 72-73 22.107310481200336 27.836497626541508 27.69408057352377 22.362111318734385 74-75 22.0358059155571 27.956867553086983 27.663102566233288 22.344223965122627 76-77 22.181128847957872 27.833911807596508 27.653979198305784 22.330980146139844 78-79 22.142517035777225 27.796509185951066 27.609121791466034 22.451851986805675 80-81 22.169958803836074 27.85796581850918 27.535898852605307 22.436176525049436 82-83 22.20489979074709 27.82258682061319 27.62781274282527 22.34470064581446 84-85 22.238222743079884 27.7849559889431 27.634989745614817 22.341831522362202 86-87 22.19301962156235 27.782454456869445 27.692261360101583 22.332264561466623 88-89 22.266190334615672 27.702261267948895 27.675821203740597 22.355727193694833 90-91 22.264383953602493 27.759972026627228 27.680730374427657 22.294913645342618 92-93 22.322414558175865 27.667174158528713 27.71211780974105 22.298293473554374 94-95 22.217494142454715 27.646446269774195 27.76381539452589 22.3722441932452 96-97 22.220462773898355 27.680462765014745 27.79111923270483 22.307955228382067 98-99 22.422792079799066 28.27245063360063 27.862682922134454 21.442074364465853 100-101 22.929651459286525 30.932358426479308 25.07237502862717 21.065615085607 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1789.0 1 1481.0 2 1694.0 3 2340.0 4 3171.0 5 4860.5 6 6271.0 7 7750.5 8 9065.0 9 9216.0 10 8436.5 11 7747.5 12 8760.5 13 12031.5 14 19325.0 15 29164.0 16 36872.0 17 40679.5 18 40792.5 19 38234.0 20 34402.0 21 30627.5 22 28736.0 23 30190.0 24 35150.0 25 43571.5 26 54702.5 27 67191.0 28 80886.0 29 95159.0 30 108893.0 31 122949.0 32 138299.5 33 153698.0 34 167988.5 35 181716.5 36 197374.5 37 209958.0 38 218013.5 39 226460.0 40 234257.0 41 240732.5 42 244056.5 43 246484.0 44 249105.0 45 251174.5 46 252554.5 47 251933.0 48 249740.0 49 246442.0 50 241839.0 51 233899.5 52 222574.0 53 209151.5 54 195129.0 55 181331.0 56 166727.5 57 150510.5 58 133176.0 59 115046.5 60 96687.0 61 78980.5 62 62702.5 63 48508.5 64 36167.5 65 26769.0 66 20214.0 67 15477.5 68 11891.5 69 8687.0 70 6299.0 71 4609.0 72 3212.0 73 2213.5 74 1487.0 75 932.5 76 575.5 77 359.0 78 235.5 79 148.0 80 93.0 81 60.0 82 39.5 83 29.5 84 24.5 85 17.5 86 13.0 87 11.0 88 9.0 89 6.5 90 4.5 91 4.0 92 3.5 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.6172002834628657E-5 2 0.005126524898577284 3 1.6172002834628657E-5 4 1.6172002834628657E-5 5 1.6172002834628657E-5 6 1.6172002834628657E-5 7 1.6172002834628657E-5 8 0.0 9 2.9109605102331585E-4 10-11 7.439121303929181E-4 12-13 0.0 14-15 3.2344005669257314E-5 16-17 0.0012856742253529781 18-19 0.0 20-21 0.0 22-23 7.439780034816554E-4 24-25 0.002499161486837709 26-27 0.007022009469357747 28-29 0.36234341250077895 30-31 0.3327783786568822 32-33 0.33145407617404327 34-35 0.1855279866472604 36-37 0.04895913804449567 38-39 0.04749993567203243 40-41 0.026642225189086596 42-43 0.02604563391632963 44-45 0.014334738322544888 46-47 0.009482015409590807 48-49 0.008974382381204505 50-51 0.008039346115893657 52-53 0.007081674881438564 54-55 8.864570514630447E-4 56-57 0.003566254594650034 58-59 0.0029096008438199454 60-61 0.005779625057177326 62-63 0.001480111209926443 64-65 7.330093248865004E-5 66-67 6.569907657634524E-4 68-69 0.0014492336265584872 70-71 0.003948991500315399 72-73 0.002156775433678869 74-75 0.0013592458942338957 76-77 4.286178807300609E-4 78-79 1.8711130089230424E-4 80-81 0.0011155779605222858 82-83 0.0013199041648820251 84-85 0.0 86-87 0.004486247794132586 88-89 0.002037023901811687 90-91 0.005072140342628905 92-93 0.013160106935268924 94-95 0.0015165995089490827 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 77.0 20-21 332.0 22-23 703.0 24-25 1416.0 26-27 2122.0 28-29 4251.0 30-31 11553.0 32-33 16067.0 34-35 23213.0 36-37 32172.0 38-39 37002.0 40-41 40317.0 42-43 49137.0 44-45 60029.0 46-47 58599.0 48-49 51016.0 50-51 45101.0 52-53 42384.0 54-55 45827.0 56-57 48075.0 58-59 48212.0 60-61 47897.0 62-63 48392.0 64-65 52329.0 66-67 55748.0 68-69 55406.0 70-71 53900.0 72-73 52160.0 74-75 53962.0 76-77 54671.0 78-79 57185.0 80-81 57922.0 82-83 55845.0 84-85 57384.0 86-87 61021.0 88-89 63690.0 90-91 67531.0 92-93 69282.0 94-95 75977.0 96-97 114155.0 98-99 513772.0 100-101 3897692.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.40866056619734 #Duplication Level Percentage of deduplicated Percentage of total 1 91.66668398293758 81.04128749476406 2 6.108201120369946 10.80035759041706 3 1.3243021994074529 3.5123935090344625 4 0.44646084161213606 1.578840200087445 5 0.18591812408405875 0.8218386162625855 6 0.08885906925159226 0.4713546775015346 7 0.056910972676159396 0.3521996006073095 8 0.0336232825134276 0.23780714966807837 9 0.022428056840701628 0.17845510179500737 >10 0.06519693539779382 0.8680957082000262 >50 9.369860934328656E-4 0.053898198682427824 >100 4.5275554093365355E-4 0.07191917718720331 >500 2.567327484526668E-5 0.01155297579281698 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.6172002834628657E-5 0.0 0.0 0.0 3 0.0 1.6172002834628657E-5 0.0 0.0 0.0 4 0.0 3.2344005669257314E-5 0.0 1.6172002834628657E-5 0.0 5 0.0 3.2344005669257314E-5 0.0 3.2344005669257314E-5 0.0 6 0.0 3.2344005669257314E-5 0.0 3.2344005669257314E-5 0.0 7 0.0 3.2344005669257314E-5 0.0 4.851600850388597E-5 0.0 8 0.0 3.2344005669257314E-5 0.0 4.851600850388597E-5 1.6172002834628657E-5 9 0.0 2.1023603685017253E-4 0.0 4.851600850388597E-5 1.6172002834628657E-5 10-11 1.6172002834628657E-5 2.1023603685017253E-4 0.0 4.851600850388597E-5 1.6172002834628657E-5 12-13 1.6172002834628657E-5 2.1023603685017253E-4 0.0 4.851600850388597E-5 1.6172002834628657E-5 14-15 1.6172002834628657E-5 2.2640803968480117E-4 0.0 7.277401275582895E-5 3.2344005669257314E-5 16-17 3.2344005669257314E-5 2.4258004251942984E-4 0.0 8.086001417314329E-5 4.851600850388597E-5 18-19 3.2344005669257314E-5 2.7492404818868716E-4 0.0 8.894601559045762E-5 6.468801133851463E-5 20-21 3.2344005669257314E-5 3.153540552752588E-4 0.0 1.6172002834628657E-4 6.468801133851463E-5 22-23 3.2344005669257314E-5 3.2344005669257314E-4 0.0 4.285580751176594E-4 8.086001417314329E-5 24-25 4.851600850388597E-5 3.396120595272018E-4 0.0 0.001503996263620465 9.703201700777194E-5 26-27 4.851600850388597E-5 3.5578406236183043E-4 0.0 0.0047303108291288825 9.703201700777194E-5 28-29 4.851600850388597E-5 3.5578406236183043E-4 0.0 0.020481841590057195 9.703201700777194E-5 30-31 5.66020099212003E-5 3.8004206661377345E-4 0.0 0.02835760697052135 9.703201700777194E-5 32-33 6.468801133851463E-5 3.8812806803108777E-4 0.0 0.03164052354595097 9.703201700777194E-5 34-35 1.1320401984240059E-4 4.447300779522881E-4 0.0 0.035950362301379504 9.703201700777194E-5 36-37 1.455480255116579E-4 5.17504090708117E-4 0.0 0.04228978741255394 1.0511801842508626E-4 38-39 1.455480255116579E-4 5.4176209496006E-4 0.0 0.0534403833670304 1.132040198424006E-4 40-41 1.455480255116579E-4 5.983641048812602E-4 0.0 0.07824014971393345 1.132040198424006E-4 42-43 1.455480255116579E-4 6.307081105505176E-4 0.0 0.08966566971659859 1.132040198424006E-4 44-45 1.455480255116579E-4 6.953961218890323E-4 0.0 0.10577298453988873 1.132040198424006E-4 46-47 1.5363402692897222E-4 7.439121303929183E-4 0.0 0.12401500373734985 1.132040198424006E-4 48-49 1.6172002834628657E-4 7.600841332275469E-4 0.0 0.13992016852520714 1.132040198424006E-4 50-51 1.7789203118091521E-4 8.247721445660615E-4 0.0 0.15487927114723865 1.132040198424006E-4 52-53 1.7789203118091521E-4 8.490301488180045E-4 0.0 0.17535302673587855 1.3746202409434358E-4 54-55 1.7789203118091521E-4 8.571161502353189E-4 0.0 0.22230035096480552 1.6172002834628657E-4 56-57 1.7789203118091521E-4 8.732881530699475E-4 0.0 0.2707597574587703 1.6172002834628657E-4 58-59 1.7789203118091521E-4 8.732881530699475E-4 0.0 0.3077855579486526 1.6172002834628657E-4 60-61 1.7789203118091521E-4 8.975461573218905E-4 0.0 0.3338305685138221 1.698060297636009E-4 62-63 1.9406403401554389E-4 9.056321587392048E-4 0.0 0.3508354294944341 1.7789203118091521E-4 64-65 1.9406403401554389E-4 9.864921729123481E-4 0.0 0.3643713958670183 1.7789203118091521E-4 66-67 1.9406403401554389E-4 0.0010026641757469768 0.0 0.3729991593792927 1.7789203118091521E-4 68-69 1.9406403401554389E-4 0.0010188361785816054 0.0 0.3817482129128268 1.7789203118091521E-4 70-71 2.021500354328582E-4 0.001035008181416234 0.0 0.38940565625502344 1.8597803259822956E-4 72-73 2.1023603685017253E-4 0.0010430941828335483 0.0 0.39427342910824664 2.1023603685017253E-4 74-75 2.1023603685017253E-4 0.0010511801842508627 0.0 0.3983649458254077 2.1023603685017253E-4 76-77 2.1023603685017253E-4 0.00108352418992012 0.0 0.40200364646319914 2.1023603685017253E-4 78-79 2.1023603685017253E-4 0.0011158681955893773 0.0 0.405060154998944 2.1023603685017253E-4 80-81 2.1023603685017253E-4 0.0011239541970066917 0.0 0.4063700872285489 2.1023603685017253E-4 82-83 2.1023603685017253E-4 0.001132040198424006 0.0 0.4067905593022492 2.4258004251942984E-4 84-85 2.1023603685017253E-4 0.0011482122012586346 0.0 0.40699270933768206 2.4258004251942984E-4 86-87 2.1023603685017253E-4 0.0011643842040932632 0.0 0.4070250533433514 2.4258004251942984E-4 88-89 2.1023603685017253E-4 0.0012048142111798351 0.0 0.4070654833504379 2.4258004251942984E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8305 0.0 53.022694 1 GTATCAA 15630 0.0 38.358818 1 ATCAACG 19675 0.0 29.949127 3 TCAACGC 19670 0.0 29.869963 4 TATCAAC 20245 0.0 29.424393 2 CAACGCA 20040 0.0 29.31847 5 AACGCAG 20645 0.0 28.583662 6 ACGCAGA 23740 0.0 24.78509 7 CGCAGAG 24320 0.0 24.176403 8 GTGGTAT 3805 0.0 22.493727 1 TGGTATC 3635 0.0 21.544315 2 GCAGAGT 27800 0.0 21.02703 9 GAGTACT 15700 0.0 20.088634 12-13 GTACATG 19985 0.0 20.085596 1 AGAGTAC 25305 0.0 19.371626 10-11 TACATGG 20350 0.0 19.346815 2 ACATGGG 20305 0.0 18.94618 3 CAGAGTA 27205 0.0 18.608582 10-11 GTACTTT 17515 0.0 18.031664 14-15 AGTACTT 17215 0.0 17.798712 12-13 >>END_MODULE