##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139624_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7058428 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.93373439525062 34.0 31.0 34.0 31.0 34.0 2 33.06176573594007 34.0 33.0 34.0 31.0 34.0 3 33.121220475720655 34.0 33.0 34.0 31.0 34.0 4 36.477291260886986 37.0 37.0 37.0 35.0 37.0 5 36.44372160486726 37.0 37.0 37.0 35.0 37.0 6 36.47175787583298 37.0 37.0 37.0 35.0 37.0 7 36.44718894915412 37.0 37.0 37.0 35.0 37.0 8 36.433611280018724 37.0 37.0 37.0 35.0 37.0 9 38.229472341433535 39.0 39.0 39.0 37.0 39.0 10-11 38.171389861878595 39.0 39.0 39.0 37.0 39.0 12-13 38.142809489591734 39.0 39.0 39.0 37.0 39.0 14-15 39.65437736277823 41.0 40.0 41.0 37.0 41.0 16-17 39.627719373208876 41.0 40.0 41.0 37.0 41.0 18-19 39.640075878085035 41.0 40.0 41.0 37.0 41.0 20-21 39.636961987942044 41.0 40.0 41.0 37.0 41.0 22-23 39.58068231846116 41.0 40.0 41.0 37.0 41.0 24-25 39.515922934492785 41.0 39.5 41.0 37.0 41.0 26-27 39.46656264947171 41.0 39.0 41.0 36.5 41.0 28-29 39.295797131708426 41.0 39.0 41.0 36.0 41.0 30-31 39.211366945300135 41.0 39.0 41.0 36.0 41.0 32-33 39.102631123360695 41.0 39.0 41.0 35.0 41.0 34-35 39.00206826751022 40.5 39.0 41.0 35.0 41.0 36-37 39.09555942659699 40.5 39.0 41.0 35.0 41.0 38-39 39.117720456906056 41.0 39.0 41.0 35.0 41.0 40-41 39.11746588245728 41.0 39.0 41.0 35.0 41.0 42-43 39.08065302058416 41.0 39.0 41.0 35.0 41.0 44-45 39.01751353909553 40.0 39.0 41.0 35.0 41.0 46-47 38.934390671315995 40.0 39.0 41.0 35.0 41.0 48-49 38.86417179042123 40.0 38.0 41.0 35.0 41.0 50-51 38.77242803977499 40.0 38.0 41.0 35.0 41.0 52-53 38.67161478406847 40.0 38.0 41.0 35.0 41.0 54-55 38.55491380233853 40.0 38.0 41.0 35.0 41.0 56-57 38.382245453709224 40.0 37.5 41.0 34.0 41.0 58-59 38.22763431232059 40.0 37.0 41.0 34.0 41.0 60-61 38.041887350452384 40.0 37.0 41.0 34.0 41.0 62-63 37.798702688482045 39.0 36.0 41.0 34.0 41.0 64-65 37.513172707633444 39.0 35.5 40.5 33.5 41.0 66-67 37.20002177316283 38.5 35.0 40.0 33.0 41.0 68-69 36.89958126425269 38.0 35.0 40.0 33.0 41.0 70-71 36.57888269445739 37.0 35.0 40.0 32.5 41.0 72-73 36.240844123115394 37.0 35.0 39.0 32.0 41.0 74-75 35.87403900801182 36.0 35.0 39.0 32.0 40.0 76-77 34.92593507663353 35.0 34.0 37.0 30.5 39.0 78-79 35.1561721231715 35.0 34.0 37.0 31.5 39.0 80-81 34.97165693352763 35.0 34.0 37.0 31.5 39.0 82-83 34.69273380948367 35.0 34.0 36.5 31.0 38.5 84-85 34.43542738837343 35.0 34.0 36.0 31.0 37.0 86-87 34.17684101905242 35.0 34.0 36.0 31.0 37.0 88-89 33.86679679730155 35.0 34.0 35.0 31.0 36.5 90-91 33.78394009257912 35.0 34.0 35.0 31.0 36.0 92-93 33.69364245255794 35.0 34.0 35.0 31.0 36.0 94-95 33.58194733505847 35.0 34.0 35.0 30.5 36.0 96-97 33.543448597811164 35.0 33.0 35.0 31.0 35.0 98-99 33.5422626001448 35.0 33.0 35.0 31.0 35.0 100-101 32.49102627263825 34.0 31.5 34.5 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 5.0 20 18.0 21 96.0 22 557.0 23 2036.0 24 5159.0 25 10950.0 26 19306.0 27 30160.0 28 44156.0 29 59228.0 30 76610.0 31 96460.0 32 122496.0 33 162590.0 34 235718.0 35 357558.0 36 668922.0 37 1592642.0 38 2383688.0 39 1131882.0 40 58191.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.31093995871885 21.119960580452275 15.456659111158903 24.112440349669974 2 13.649243237307887 21.472564917239595 41.69801042076218 23.180181424690335 3 16.72969062370412 26.599269213948094 31.538443338721216 25.132596823626567 4 11.780940963325252 18.88000242546993 39.27739697207281 30.06165963913201 5 12.856207197439314 37.96290589957224 35.929450003520614 13.251436899467828 6 29.241302630175248 38.574713601203214 18.878753013950558 13.305230754670976 7 25.861186918841835 33.1907094881055 23.224636310611416 17.72346728244126 8 24.33618363748982 36.539311586092545 21.312408371949108 17.81209640446853 9 25.252188381129244 16.901573072931114 21.440000544031562 36.40623800190808 10-11 23.700440597287788 27.090053189311476 29.22845675625247 19.98104945714827 12-13 24.673921728747533 24.674693855345694 29.197542285619406 21.453842130287367 14-15 21.864293824147197 26.068687268237987 26.997775424719332 25.069243482895477 16-17 21.323837975179952 29.259997342146 27.607431280448086 21.808733402225965 18-19 21.337197367062092 28.238267534678762 29.507502167267578 20.917032930991567 20-21 22.18178263355088 27.362928425044963 29.421040439824804 21.034248501579352 22-23 21.857478961115877 27.403632736425763 29.27370775309181 21.46518054936655 24-25 21.645918685979094 27.591844294525554 29.341099835112523 21.42113718438283 26-27 21.612179614168006 27.750317937906793 29.24985507361424 21.38764737431096 28-29 21.490874560023112 27.708028615353196 29.28495416911123 21.516142655512464 30-31 21.859690598686203 27.628319655350435 29.206081213394334 21.305908532569028 32-33 21.6918111659614 27.707861653977407 29.167386107005346 21.432941073055847 34-35 21.733005057251233 27.788581305311116 29.182692441659704 21.295721195777947 36-37 21.74208345142804 27.661257666364513 29.072547931167 21.52411095104044 38-39 21.5706557348115 27.75382001989029 29.166153080311457 21.509371164986753 40-41 21.79275560140561 27.658654920601883 29.041647088764783 21.506942389227724 42-43 21.793362653117455 27.666691086847894 28.843413030686538 21.696533229348116 44-45 21.789571534663978 27.879489841930305 28.604945868251434 21.725992755154287 46-47 21.957710558401132 27.761212401685846 28.238198603493576 22.042878436419443 48-49 21.87283951664155 27.880436238571317 28.2347132986758 22.012010946111328 50-51 21.846213564611006 28.030449777767014 28.15641206852978 21.966924589092194 52-53 22.000288462388742 28.008950872049855 28.03857467867394 21.952185986887464 54-55 21.982203239119823 27.959546170618786 27.978896485337835 22.07935410492355 56-57 22.054227968213873 28.068803474513842 27.834561454410782 22.0424071028615 58-59 21.887032424793684 28.1965006519312 28.043300723760744 21.873166199514372 60-61 22.106324818773015 28.232302924639423 27.797460557754178 21.863911698833384 62-63 21.978975958744556 28.37758511946258 27.746213942049845 21.897224979743015 64-65 21.98496856823688 28.267423798323478 27.749631712279278 21.997975921160364 66-67 22.053351655207393 28.234342818900267 27.615550150458667 22.09675537543367 68-69 22.026719086451696 28.13892182142264 27.758156575989084 22.07620251613658 70-71 22.041993877444614 27.852446249707235 27.835819845587135 22.26974002726101 72-73 22.071538102724055 27.91186713289694 27.737385994052293 22.279208770326704 74-75 21.977795655237163 28.0199717725214 27.689669250963995 22.31256332127744 76-77 22.129681074538045 27.93771459774572 27.66729628413142 22.26530804358481 78-79 22.104395865764186 27.936787584055946 27.62203882464382 22.33677772553605 80-81 22.111424086629174 27.913801976364006 27.6018004525181 22.372973484488718 82-83 22.161462514577718 27.876421487234794 27.68300070198641 22.279115296201077 84-85 22.30592507483801 27.833057898077012 27.642988858372103 22.218028168712873 86-87 22.1459102486082 27.828205648342237 27.724777424662474 22.30110667838709 88-89 22.246856848660446 27.813208310169905 27.653579217089906 22.28635562407974 90-91 22.213065731076384 27.886128733090803 27.6729288616805 22.227876674152313 92-93 22.263359864625844 27.78785025960727 27.772582003765734 22.176207872001154 94-95 22.16954951834342 27.77160452545123 27.792858423507592 22.265987532697757 96-97 22.171888203229635 27.800633086228483 27.8334330708753 22.19404563966658 98-99 22.421730285236798 28.31139940403385 27.8854707829843 21.381399527745053 100-101 22.890341707100877 31.065670941022343 25.110385501519854 20.933601850356926 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1820.0 1 1569.5 2 1873.5 3 2570.5 4 3582.0 5 5683.0 6 7484.0 7 9064.5 8 10244.0 9 10318.0 10 9527.5 11 8901.0 12 10015.5 13 13654.5 14 22223.5 15 33827.5 16 43062.0 17 47915.0 18 48365.0 19 45256.5 20 40501.5 21 35962.0 22 33772.0 23 35720.0 24 41469.5 25 50919.5 26 63520.5 27 78163.0 28 94091.0 29 111273.5 30 127557.5 31 142477.0 32 158513.5 33 174993.0 34 191562.0 35 207297.0 36 224503.0 37 239264.0 38 249142.5 39 258898.0 40 268647.5 41 276926.0 42 280265.0 43 283121.0 44 286206.0 45 288124.0 46 291043.0 47 291699.5 48 290251.5 49 284751.5 50 276278.5 51 265298.5 52 250754.5 53 235933.0 54 219869.5 55 202577.0 56 184635.5 57 165762.5 58 146925.0 59 127014.0 60 105957.0 61 85890.0 62 67681.0 63 51925.0 64 38574.0 65 28827.5 66 22060.5 67 16930.0 68 13100.5 69 9710.5 70 7045.0 71 5127.5 72 3575.5 73 2434.0 74 1646.5 75 1088.0 76 686.5 77 423.0 78 268.5 79 172.0 80 113.0 81 72.0 82 49.5 83 33.5 84 22.0 85 15.5 86 12.0 87 8.5 88 7.0 89 6.5 90 5.0 91 3.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.4167460516704286E-5 2 0.0057094865882318276 3 1.4167460516704286E-5 4 2.833492103340857E-5 5 1.4167460516704286E-5 6 1.4167460516704286E-5 7 1.4167460516704286E-5 8 0.0 9 1.9834444723386E-4 10-11 7.792103284187358E-4 12-13 0.0 14-15 2.833492103340857E-5 16-17 0.0014450809727038372 18-19 1.4167460516704286E-5 20-21 7.083893344618448E-6 22-23 8.359517040946332E-4 24-25 0.0026074087677945904 26-27 0.007689597116138856 28-29 0.3617262066060072 30-31 0.3323190495663827 32-33 0.3309968113511603 34-35 0.18549484511893602 36-37 0.049575187972886105 38-39 0.04776142014942923 40-41 0.027659871958989782 42-43 0.02691089808210428 44-45 0.014775706178312897 46-47 0.009572850919123754 48-49 0.009499314826276965 50-51 0.008542036314019782 52-53 0.007561655697692323 54-55 6.757207098876062E-4 56-57 0.0035918038751228875 58-59 0.0029277490099328765 60-61 0.006292877612430253 62-63 0.0015016719806521086 64-65 7.21739160420081E-5 66-67 7.291966278707054E-4 68-69 0.0017116616655843888 70-71 0.0041626347177141955 72-73 0.0022816758031206303 74-75 0.0016290337365290305 76-77 5.968710654472534E-4 78-79 1.8958656169086396E-4 80-81 0.001167617606976428 82-83 0.001321824879705124 84-85 8.910877766905518E-6 86-87 0.0037774397414969065 88-89 0.0019260644997923775 90-91 0.004976821241369077 92-93 0.013839926564880497 94-95 0.0013337095664510312 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 106.0 20-21 337.0 22-23 791.0 24-25 1667.0 26-27 2640.0 28-29 4847.0 30-31 13076.0 32-33 17919.0 34-35 26332.0 36-37 36123.0 38-39 42040.0 40-41 45406.0 42-43 55964.0 44-45 66842.0 46-47 65859.0 48-49 57138.0 50-51 50289.0 52-53 47013.0 54-55 51093.0 56-57 54785.0 58-59 55821.0 60-61 55725.0 62-63 56633.0 64-65 62078.0 66-67 66257.0 68-69 64434.0 70-71 60189.0 72-73 58438.0 74-75 59653.0 76-77 60969.0 78-79 63692.0 80-81 64439.0 82-83 62999.0 84-85 64131.0 86-87 67672.0 88-89 71283.0 90-91 76139.0 92-93 77749.0 94-95 85811.0 96-97 128931.0 98-99 587501.0 100-101 4467617.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.5517750288813 #Duplication Level Percentage of deduplicated Percentage of total 1 90.54412850021065 78.3675504013635 2 6.797108713099941 11.766036483661498 3 1.5379493318047004 3.993367337165362 4 0.526424944100752 1.822520533255988 5 0.23750145103081857 1.0278086079326139 6 0.11676013892176164 0.6063478365778343 7 0.07442251264821428 0.45089804002686207 8 0.04294927657005702 0.29738688986758216 9 0.027896239808745033 0.21730221648704004 >10 0.09281945213072691 1.2343124744426517 >50 0.0015033067813153265 0.08229871222950638 >100 4.6190565479641227E-4 0.08127542447654167 >500 4.948482728613012E-5 0.031180237325204144 >1k 2.474241024766385E-5 0.021714805187840816 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 1.4167460516704286E-5 0.0 0.0 0.0 5 0.0 4.2502381550112855E-5 0.0 1.4167460516704286E-5 0.0 6 1.4167460516704286E-5 4.2502381550112855E-5 0.0 1.4167460516704286E-5 0.0 7 2.833492103340857E-5 4.2502381550112855E-5 0.0 1.4167460516704286E-5 0.0 8 2.833492103340857E-5 5.666984206681714E-5 0.0 1.4167460516704286E-5 0.0 9 2.833492103340857E-5 1.1333968413363429E-4 0.0 2.833492103340857E-5 1.4167460516704286E-5 10-11 2.833492103340857E-5 1.1333968413363429E-4 0.0 2.833492103340857E-5 1.4167460516704286E-5 12-13 2.833492103340857E-5 1.1333968413363429E-4 0.0 3.5418651291760715E-5 1.4167460516704286E-5 14-15 2.833492103340857E-5 1.345908749086907E-4 0.0 4.2502381550112855E-5 7.792103284187356E-5 16-17 7.083730258352143E-5 1.4167460516704286E-4 0.0 4.2502381550112855E-5 8.500476310022571E-5 18-19 7.083730258352143E-5 1.5584206568374713E-4 0.0 7.792103284187356E-5 8.500476310022571E-5 20-21 7.083730258352143E-5 1.8417698671715572E-4 0.0 1.1333968413363429E-4 8.500476310022571E-5 22-23 7.083730258352143E-5 1.9834444723386E-4 0.0 4.2502381550112855E-4 9.208849335857786E-5 24-25 7.083730258352143E-5 2.125119077505643E-4 0.0 0.0014167460516704285 9.917222361693E-5 26-27 7.083730258352143E-5 2.2667936826726857E-4 0.0 0.004349410378628215 9.917222361693E-5 28-29 7.083730258352143E-5 2.2667936826726857E-4 0.0 0.020188631236303607 1.1333968413363429E-4 30-31 7.083730258352143E-5 2.691817498173814E-4 0.0 0.028086990474366247 1.2750714465033857E-4 32-33 7.083730258352143E-5 2.691817498173814E-4 0.0 0.030792975433056764 1.4167460516704286E-4 34-35 7.792103284187356E-5 3.329353221425507E-4 0.0 0.03473152945670056 1.5584206568374715E-4 36-37 8.500476310022571E-5 3.9668889446772E-4 0.0 0.041028965656375614 1.5584206568374715E-4 38-39 8.500476310022571E-5 3.9668889446772E-4 0.0 0.051215369767885995 1.5584206568374715E-4 40-41 8.500476310022571E-5 4.8169365756794573E-4 0.0 0.07517254550163294 1.5584206568374715E-4 42-43 9.917222361693E-5 5.100285786013543E-4 0.0 0.08491975833712548 1.5584206568374715E-4 44-45 9.917222361693E-5 5.737821509265236E-4 0.0 0.0991580561564133 1.629257959420993E-4 46-47 9.917222361693E-5 6.092008022182843E-4 0.0 0.11483435121814659 1.7000952620045142E-4 48-49 9.917222361693E-5 6.092008022182843E-4 0.0 0.12933474705699344 1.9834444723386E-4 50-51 9.917222361693E-5 6.658706442851014E-4 0.0 0.1432684444751721 1.9834444723386E-4 52-53 9.917222361693E-5 6.658706442851014E-4 0.0 0.16334373602734206 2.1959563800891642E-4 54-55 9.917222361693E-5 6.658706442851014E-4 0.0 0.20644823464941486 2.5501428930067713E-4 56-57 1.0625595387528215E-4 6.800381048018057E-4 0.0 0.25190453171726057 2.7626548007573355E-4 58-59 1.2042341439198642E-4 6.871218350601579E-4 0.0 0.2862535397400101 2.833492103340857E-4 60-61 1.48758335425395E-4 7.012892955768622E-4 0.0 0.31067824167080826 2.833492103340857E-4 62-63 1.8417698671715572E-4 7.083730258352143E-4 0.0 0.32659538356132556 2.833492103340857E-4 64-65 2.1251190775056428E-4 7.9337778893544E-4 0.0 0.33928234445403427 2.833492103340857E-4 66-67 2.1251190775056428E-4 8.217127099688486E-4 0.0 0.3466423401924621 2.9751667085079E-4 68-69 2.1251190775056428E-4 8.854662822940179E-4 0.0 0.3546115367331083 3.187678616258465E-4 70-71 2.1251190775056428E-4 9.138012033274264E-4 0.0 0.3614685876231931 3.4001905240090284E-4 72-73 2.1251190775056428E-4 9.208849335857786E-4 0.0 0.3655417325217456 4.3919127601783285E-4 74-75 2.1251190775056428E-4 9.42136124360835E-4 0.0 0.3690056766180798 4.3919127601783285E-4 76-77 2.1251190775056428E-4 9.704710453942436E-4 0.0 0.37233502983950534 4.3919127601783285E-4 78-79 2.1251190775056428E-4 9.917222361693E-4 0.0 0.3752393592454297 4.4627500627618497E-4 80-81 2.1251190775056428E-4 9.917222361693E-4 0.0 0.3766631890273585 4.816936575679457E-4 82-83 2.1251190775056428E-4 9.917222361693E-4 0.0 0.37718738506647653 5.100285786013543E-4 84-85 2.1251190775056428E-4 0.0010058896966860043 0.0 0.3775274041188774 5.100285786013543E-4 86-87 2.1251190775056428E-4 0.0010200571572027085 0.0 0.37756990650042754 5.100285786013543E-4 88-89 2.1251190775056428E-4 0.00109089445978623 0.0 0.3775911576912026 5.100285786013543E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9485 0.0 52.020794 1 GTATCAA 17805 0.0 37.79821 1 TCAACGC 22040 0.0 29.738396 4 ATCAACG 22135 0.0 29.591446 3 CAACGCA 22565 0.0 29.008602 5 TATCAAC 22790 0.0 29.005054 2 AACGCAG 23255 0.0 28.147888 6 ACGCAGA 26305 0.0 24.819195 7 CGCAGAG 26840 0.0 24.356335 8 GCAGAGT 30895 0.0 21.145702 9 GTACATG 21235 0.0 19.974133 1 GAGTACT 18750 0.0 19.907434 12-13 TACATGG 20980 0.0 19.442467 2 AGAGTAC 28045 0.0 19.392166 10-11 CTTATAC 7110 0.0 19.063303 1 ACATGGG 21135 0.0 18.813416 3 CAGAGTA 30175 0.0 18.73177 10-11 GTGGTAT 4680 0.0 18.729082 1 TGGTATC 4500 0.0 17.957993 2 GTACTTT 21060 0.0 17.764965 14-15 >>END_MODULE