##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139623_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7971169 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.98590219326676 34.0 31.0 34.0 31.0 34.0 2 33.10833931635372 34.0 33.0 34.0 31.0 34.0 3 33.16548977947902 34.0 33.0 34.0 31.0 34.0 4 36.513675346740236 37.0 37.0 37.0 35.0 37.0 5 36.485621243258045 37.0 37.0 37.0 35.0 37.0 6 36.516012519619146 37.0 37.0 37.0 35.0 37.0 7 36.493337300965514 37.0 37.0 37.0 35.0 37.0 8 36.48134106804159 37.0 37.0 37.0 35.0 37.0 9 38.28611048141119 39.0 39.0 39.0 37.0 39.0 10-11 38.228418566963015 39.0 39.0 39.0 37.0 39.0 12-13 38.20143099462575 39.0 39.0 39.0 37.0 39.0 14-15 39.723248308999594 41.0 40.0 41.0 37.0 41.0 16-17 39.69689521072756 41.0 40.0 41.0 37.0 41.0 18-19 39.70791442258971 41.0 40.0 41.0 37.0 41.0 20-21 39.700944986936356 41.0 40.0 41.0 37.0 41.0 22-23 39.64624517216562 41.0 40.0 41.0 37.0 41.0 24-25 39.58338336156713 41.0 40.0 41.0 37.0 41.0 26-27 39.53664199251223 41.0 39.5 41.0 37.0 41.0 28-29 39.36820969130592 41.0 39.0 41.0 36.5 41.0 30-31 39.28404744015513 41.0 39.0 41.0 36.0 41.0 32-33 39.17871012614462 41.0 39.0 41.0 35.5 41.0 34-35 39.084387497129924 40.5 39.0 41.0 35.0 41.0 36-37 39.18744816233625 40.5 39.0 41.0 35.0 41.0 38-39 39.21146196571809 41.0 39.0 41.0 35.0 41.0 40-41 39.204171813612234 41.0 39.0 41.0 35.0 41.0 42-43 39.16259030637125 41.0 39.0 41.0 35.0 41.0 44-45 39.09480496268634 40.5 39.0 41.0 35.0 41.0 46-47 39.00530852825683 40.0 39.0 41.0 35.0 41.0 48-49 38.92709724425795 40.0 38.5 41.0 35.0 41.0 50-51 38.832875687553624 40.0 38.0 41.0 35.0 41.0 52-53 38.724499890999546 40.0 38.0 41.0 35.0 41.0 54-55 38.60073919653051 40.0 38.0 41.0 35.0 41.0 56-57 38.42252327148161 40.0 37.5 41.0 34.5 41.0 58-59 38.25813963111575 40.0 37.0 41.0 34.0 41.0 60-61 38.060519476963755 39.5 36.5 41.0 34.0 41.0 62-63 37.80779219661306 39.0 36.0 41.0 34.0 41.0 64-65 37.50814109157828 39.0 35.5 40.5 34.0 41.0 66-67 37.18151027335813 38.0 35.0 40.0 33.0 41.0 68-69 36.87119144109387 37.5 35.0 40.0 33.0 41.0 70-71 36.544287788443874 37.0 35.0 39.5 33.0 41.0 72-73 36.20152292233344 36.5 35.0 39.0 32.5 40.5 74-75 35.83078675828811 36.0 35.0 39.0 32.0 40.0 76-77 34.89273758464523 35.0 34.0 37.0 30.5 39.0 78-79 35.12343735698474 35.0 34.0 37.0 32.0 39.0 80-81 34.94309276844247 35.0 34.0 37.0 32.0 39.0 82-83 34.673906192567486 35.0 34.0 36.0 31.5 38.5 84-85 34.424327002908306 35.0 34.0 36.0 31.0 37.0 86-87 34.17516405239249 35.0 34.0 35.5 31.0 37.0 88-89 33.87467282337917 35.0 34.0 35.0 31.0 36.5 90-91 33.797322950788 35.0 34.0 35.0 31.0 36.0 92-93 33.70774319557552 35.0 34.0 35.0 31.0 36.0 94-95 33.59749682362937 35.0 34.0 35.0 31.0 35.5 96-97 33.55730738741035 35.0 33.0 35.0 31.0 35.0 98-99 33.551995991616636 35.0 33.0 35.0 31.0 35.0 100-101 32.50388805912383 34.0 31.5 34.5 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 3.0 20 17.0 21 90.0 22 392.0 23 1416.0 24 3844.0 25 8466.0 26 15596.0 27 26317.0 28 39901.0 29 56660.0 30 76929.0 31 100998.0 32 134175.0 33 181694.0 34 272278.0 35 417618.0 36 791822.0 37 1869117.0 38 2666530.0 39 1243405.0 40 63900.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.85355467443533 20.797496878122974 15.290297554962473 24.058650892479218 2 14.021439598332156 21.35945546004681 41.15283790200815 23.466267039612884 3 16.966087520947372 26.349394806230357 31.244789030864496 25.439728641957775 4 12.151885934880795 18.53871817498218 38.82019267946496 30.489203210672066 5 13.176679547258205 37.84456376896429 35.574293647880374 13.404463035897132 6 29.828434133726482 38.067830979808974 18.669828228392184 13.433906658072356 7 26.393102339105724 32.98236418611781 22.970604300550256 17.653929174226203 8 24.78286434524221 36.14799786580864 21.054389889362525 18.014747899586624 9 25.69229964405391 16.68490535432085 21.252451496653368 36.37034350497187 10-11 24.07410508884425 26.832201904062952 28.900740015901167 20.192952991191632 12-13 25.011488277315408 24.518135294835673 28.891609248279643 21.57876717956927 14-15 22.218120634030125 25.823696831342264 26.711747476875093 25.24643505775252 16-17 21.618486623889307 28.958834601110343 27.3861600727333 22.036518702267045 18-19 21.676729181971826 27.997045100542355 29.28086574012742 21.045359977358398 20-21 22.501813285904895 27.059808419906773 29.24164158781808 21.196736706370253 22-23 22.26594446345548 27.008974009529496 29.053364477275156 21.67171704973987 24-25 22.01955810829659 27.200309143118545 29.09638317232966 21.68374957625521 26-27 21.893682936929284 27.363603145659145 29.060436988595345 21.682276928816226 28-29 21.81152877764818 27.349245888401075 29.090542602581177 21.748682731369573 30-31 22.16113740131296 27.210598514527227 28.989146853175075 21.639117230984738 32-33 21.95588491347384 27.37903660913587 28.87401642656402 21.79106205082627 34-35 22.038575788356514 27.403702389536903 28.92377562431082 21.63394619779576 36-37 22.051091708097616 27.316861420563253 28.87669177872886 21.75535509261027 38-39 21.911399034044155 27.475510565365273 28.896990813369104 21.716099587221464 40-41 22.117665245058955 27.335540684514054 28.72534449238727 21.82144957803972 42-43 22.08100455286834 27.440509613311683 28.489450590586348 21.989035243233634 44-45 22.172894858745376 27.515673826013238 28.325307966190806 21.986123349050583 46-47 22.214472237673952 27.56606205823334 28.000585996190893 22.218879707901817 48-49 22.186798113925207 27.68428593284843 27.915317345470847 22.213598607755518 50-51 22.211641988455515 27.75613527470469 27.813249791218357 22.218972945621438 52-53 22.37027154043053 27.663613010372558 27.69299221086982 22.2731232383271 54-55 22.348773760881723 27.6038571640826 27.685007913641748 22.362361161393927 56-57 22.355297307220397 27.725100780919025 27.648869301529157 22.27073261033142 58-59 22.248607178737785 27.75016746025188 27.745507636691435 22.255717724318902 60-61 22.381465625254073 27.76343075879597 27.637022306915267 22.218081309034694 62-63 22.32678190151608 27.83518091304287 27.597677560968798 22.240359624472255 64-65 22.327813992682046 27.770026064962288 27.586840085747294 22.315319856608376 66-67 22.394285320203664 27.81923619649768 27.42084374498624 22.36563473831242 68-69 22.333645206690324 27.76295565282129 27.51312011897865 22.390279021509734 70-71 22.29798824122791 27.55811472946527 27.622280395723024 22.52161663358379 72-73 22.379310585980935 27.60089059708947 27.4832976238107 22.53650119311889 74-75 22.29228319284261 27.69260834624831 27.449891758005645 22.565216702903435 76-77 22.4584838054777 27.59527466153717 27.412808257012177 22.533433275972946 78-79 22.391284021698116 27.606879367453008 27.353518141920535 22.648318468928338 80-81 22.41340118794168 27.640487326529556 27.32376376048819 22.62234772504057 82-83 22.458796565509335 27.5766576382681 27.43519780977844 22.529347986444133 84-85 22.52217489610594 27.553577757081104 27.395700218821815 22.528547127991143 86-87 22.45400794435301 27.516290052250437 27.472431761215265 22.55727024218129 88-89 22.50395867829583 27.48127415340395 27.414850031648523 22.599917136651694 90-91 22.52082899756491 27.559896731668914 27.409140281776413 22.51013398898976 92-93 22.569376494413078 27.44739686613652 27.47824233685418 22.504984302596213 94-95 22.447750817123207 27.47257013274028 27.514375851353417 22.56530319878309 96-97 22.480317831364655 27.434071184571685 27.564928876405403 22.520682107658256 98-99 22.684950972747366 28.02623986576829 27.624192244753498 21.66461691673085 100-101 23.246520839180086 30.72482974277327 24.78445815185957 21.244191266187077 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2289.0 1 1927.5 2 2258.5 3 3156.0 4 4275.5 5 6593.0 6 8547.5 7 10533.0 8 12408.0 9 12832.0 10 11769.5 11 10669.0 12 11618.0 13 15438.0 14 24919.5 15 37689.0 16 47670.0 17 52920.0 18 53179.0 19 49439.5 20 44042.0 21 38511.5 22 35131.0 23 36514.0 24 42526.0 25 52649.5 26 65806.0 27 80603.0 28 97279.5 29 115552.5 30 133259.5 31 150506.0 32 168357.5 33 187670.0 34 206278.0 35 222255.0 36 240201.5 37 255952.5 38 267358.5 39 278745.0 40 289726.0 41 299086.0 42 304314.0 43 309544.5 44 314852.0 45 319175.0 46 323133.0 47 323476.0 48 322161.0 49 319478.5 50 314231.0 51 306416.5 52 294918.5 53 279831.5 54 263387.5 55 246480.0 56 227126.5 57 205524.0 58 184164.5 59 160922.5 60 135723.0 61 111370.5 62 88802.0 63 69077.0 64 52106.0 65 39033.5 66 29760.0 67 22828.0 68 17632.5 69 13170.5 70 9438.0 71 6803.0 72 4819.0 73 3371.5 74 2299.5 75 1499.5 76 988.0 77 606.0 78 384.0 79 235.5 80 147.0 81 88.5 82 57.0 83 45.5 84 35.5 85 27.5 86 20.5 87 15.5 88 10.0 89 4.5 90 2.5 91 1.5 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 3.763563412091753E-5 2 0.005068265394950226 3 3.763563412091753E-5 4 3.763563412091753E-5 5 3.763563412091753E-5 6 3.763563412091753E-5 7 3.763563412091753E-5 8 0.0 9 2.2581380472550515E-4 10-11 7.088044426106133E-4 12-13 0.0 14-15 2.509042274727835E-5 16-17 0.0016308774785730928 18-19 1.2545211373639176E-5 20-21 1.2545434073587126E-5 22-23 7.715876098837989E-4 24-25 0.0028044954242178906 26-27 0.007499442876116044 28-29 0.36527747094193985 30-31 0.3355719037584807 32-33 0.33431763783542506 34-35 0.18581545156381307 36-37 0.0467611737713939 38-39 0.044938526008697806 40-41 0.024541243236168523 42-43 0.024174849246182486 44-45 0.011690171509469462 46-47 0.007617107101656543 48-49 0.007582716346782717 50-51 0.006051857726180484 52-53 0.005085121837226194 54-55 3.0571557690159846E-4 56-57 0.0027799443312724087 58-59 0.0016844115511697652 60-61 0.003988389540507595 62-63 5.544357668618655E-4 64-65 7.078830135542608E-6 66-67 7.575302256346655E-4 68-69 0.0016168454507960004 70-71 0.0042576018241199266 72-73 0.002149518599850697 74-75 0.0015535642182494586 76-77 6.758247427247842E-4 78-79 1.745536189632623E-4 80-81 9.82293092622411E-4 82-83 0.0011873544423741192 84-85 0.0 86-87 0.003945820157774056 88-89 0.0017202611066970248 90-91 0.004553113164654745 92-93 0.013116278201546813 94-95 0.00136667448941083 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 78.0 20-21 342.0 22-23 784.0 24-25 2125.0 26-27 2728.0 28-29 5226.0 30-31 14590.0 32-33 20175.0 34-35 28741.0 36-37 40535.0 38-39 46382.0 40-41 51447.0 42-43 62278.0 44-45 75444.0 46-47 73598.0 48-49 63748.0 50-51 56124.0 52-53 53055.0 54-55 56630.0 56-57 59265.0 58-59 59627.0 60-61 59415.0 62-63 59532.0 64-65 65583.0 66-67 69191.0 68-69 69351.0 70-71 66769.0 72-73 65327.0 74-75 67510.0 76-77 69339.0 78-79 72544.0 80-81 72794.0 82-83 71609.0 84-85 72427.0 86-87 77063.0 88-89 80127.0 90-91 84979.0 92-93 87549.0 94-95 95767.0 96-97 144423.0 98-99 666380.0 100-101 5080568.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.0892477385635 #Duplication Level Percentage of deduplicated Percentage of total 1 90.31987183294142 77.75569821941397 2 6.849161707189875 11.792783580235033 3 1.5856914384064533 4.095329492336768 4 0.5945485845266859 2.0473696154372045 5 0.26030545260117643 1.1204750298340787 6 0.13748187439819806 0.7101426686777126 7 0.07600683393477908 0.4580359809504536 8 0.04754663560737188 0.32746032735505937 9 0.030341992947320217 0.23509074129512372 >10 0.09674721552695872 1.261089393787558 >50 0.0018615064615795022 0.10427323367850909 >100 3.8965074505305876E-4 0.06151862712940596 >500 4.5274713063828626E-5 0.03073308986915434 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.2545211373639174E-5 2 0.0 2.5090422747278348E-5 0.0 0.0 1.2545211373639174E-5 3 0.0 2.5090422747278348E-5 0.0 0.0 1.2545211373639174E-5 4 0.0 6.272605686819587E-5 0.0 1.2545211373639174E-5 1.2545211373639174E-5 5 0.0 7.527126824183504E-5 0.0 1.2545211373639174E-5 1.2545211373639174E-5 6 0.0 8.781647961547422E-5 0.0 1.2545211373639174E-5 3.763563412091752E-5 7 0.0 1.0036169098911339E-4 0.0 1.2545211373639174E-5 3.763563412091752E-5 8 0.0 1.5054253648367008E-4 0.0 1.2545211373639174E-5 3.763563412091752E-5 9 0.0 2.88539861593701E-4 0.0 1.2545211373639174E-5 3.763563412091752E-5 10-11 0.0 2.948124672805206E-4 0.0 1.881781706045876E-5 3.763563412091752E-5 12-13 3.763563412091752E-5 3.0108507296734016E-4 0.0 2.5090422747278348E-5 3.763563412091752E-5 14-15 3.763563412091752E-5 4.0771936964327315E-4 0.0 3.763563412091752E-5 5.645345118137628E-5 16-17 5.6453451181376287E-5 4.1399197533009273E-4 0.0 5.6453451181376287E-5 1.0036169098911339E-4 18-19 6.272605686819587E-5 4.3908239807737107E-4 0.0 7.527126824183504E-5 1.1290690236275256E-4 20-21 6.899866255501546E-5 5.080810606323866E-4 0.0 1.442699307968505E-4 1.1917950804957216E-4 22-23 8.781647961547422E-5 5.958975402478607E-4 0.0 4.1399197533009273E-4 1.379973251100309E-4 24-25 1.0663429667593298E-4 6.962592312369741E-4 0.0 0.0015116979705235205 1.7563295923094844E-4 26-27 1.1290690236275256E-4 7.276222596710721E-4 0.0 0.004660546025306953 1.7563295923094844E-4 28-29 1.1290690236275256E-4 7.276222596710721E-4 0.0 0.021358222363620692 1.7563295923094844E-4 30-31 1.2545211373639174E-4 8.028935279129071E-4 0.0 0.02963178926453573 1.7563295923094844E-4 32-33 1.2545211373639174E-4 8.279839506601855E-4 0.0 0.032460734429291364 1.7563295923094844E-4 34-35 1.3172471942321133E-4 9.973443042043144E-4 0.0 0.03661319939396593 1.881781706045876E-4 36-37 1.379973251100309E-4 0.0011792498691220823 0.0 0.04203900331306487 1.881781706045876E-4 38-39 1.5054253648367008E-4 0.0011917950804957215 0.0 0.051573363957030646 1.881781706045876E-4 40-41 1.5054253648367008E-4 0.0012796115601111956 0.0 0.07313858230831638 1.881781706045876E-4 42-43 1.5054253648367008E-4 0.0013235197999189327 0.0 0.08289248415132083 1.881781706045876E-4 44-45 1.5681514217048966E-4 0.00151797057621034 0.0 0.09673612490213168 2.0072338197822678E-4 46-47 1.6308774785730925E-4 0.001655967901320371 0.0 0.11164610861970183 2.0072338197822678E-4 48-49 1.6308774785730925E-4 0.001655967901320371 0.0 0.12542702331364447 2.1326859335186595E-4 50-51 1.6308774785730925E-4 0.0019633255799745308 0.0 0.13846149793085555 2.1326859335186595E-4 52-53 1.6308774785730925E-4 0.0019821433970349895 0.0 0.15787521253156217 2.2581380472550515E-4 54-55 1.6308774785730925E-4 0.002007233819782268 0.0 0.20179599755067296 2.3835901609914432E-4 56-57 1.6308774785730925E-4 0.0020448694539031854 0.0 0.24753583821896136 2.3835901609914432E-4 58-59 1.6308774785730925E-4 0.0020574146652768245 0.0 0.28042310983495644 2.3835901609914432E-4 60-61 1.6308774785730925E-4 0.0020887776937109225 0.0 0.30482981856237146 2.3835901609914432E-4 62-63 1.6308774785730925E-4 0.0021201407221450204 0.0 0.32054269580785455 2.6344943884642265E-4 64-65 1.6308774785730925E-4 0.002502769669041015 0.0 0.3335332621852579 2.6344943884642265E-4 66-67 1.6308774785730925E-4 0.002546677908848752 0.0 0.34177546605773884 2.6344943884642265E-4 68-69 1.7563295923094844E-4 0.002621949177090587 0.0 0.34937786415016414 2.6344943884642265E-4 70-71 1.881781706045876E-4 0.002653312205524685 0.0 0.3563341838568471 2.6972204453324224E-4 72-73 1.881781706045876E-4 0.0026595848112115046 0.0 0.36073755304899446 2.759946502200618E-4 74-75 1.881781706045876E-4 0.00273485607945334 0.0 0.3644007547700971 2.759946502200618E-4 76-77 1.881781706045876E-4 0.002929306855744747 0.0 0.3677628714182324 2.822672559068814E-4 78-79 2.0699598766504637E-4 0.003010850729673402 0.0 0.3707486317251585 2.88539861593701E-4 80-81 2.1326859335186595E-4 0.0030171233353602214 0.0 0.37199688025683564 2.948124672805206E-4 82-83 2.1326859335186595E-4 0.0030484863637943193 0.0 0.37249868871178116 3.0108507296734016E-4 84-85 2.1326859335186595E-4 0.0030610315751679585 0.0 0.37285622723592987 3.0108507296734016E-4 86-87 2.1326859335186595E-4 0.003098667209288876 0.0 0.37293149850417173 3.0108507296734016E-4 88-89 2.1326859335186595E-4 0.0032303919287120873 0.0 0.372956588926919 3.0108507296734016E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11185 0.0 53.856922 1 GTATCAA 20690 0.0 39.406742 1 TCAACGC 26200 0.0 30.676422 4 ATCAACG 26325 0.0 30.547033 3 TATCAAC 26875 0.0 30.178272 2 CAACGCA 26820 0.0 29.98381 5 AACGCAG 27485 0.0 29.320702 6 ACGCAGA 31765 0.0 25.343071 7 CGCAGAG 32605 0.0 24.66388 8 GCAGAGT 36780 0.0 21.66619 9 GTGGTAT 5195 0.0 21.525202 1 TGGTATC 4970 0.0 20.947979 2 GAGTACT 21605 0.0 20.336378 12-13 GTACATG 25400 0.0 20.055819 1 TACATGG 25305 0.0 19.504658 2 AGAGTAC 33510 0.0 19.299656 10-11 CAGAGTA 36020 0.0 19.215609 10-11 ACATGGG 25780 0.0 18.712362 3 GTACTTT 24000 0.0 18.360706 14-15 AGTACTT 23440 0.0 17.684208 12-13 >>END_MODULE