##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139622_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7979707 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.92990970721105 34.0 31.0 34.0 31.0 34.0 2 33.058385351742864 34.0 33.0 34.0 31.0 34.0 3 33.115304108283674 34.0 33.0 34.0 31.0 34.0 4 36.47699182438654 37.0 37.0 37.0 35.0 37.0 5 36.441546412669034 37.0 37.0 37.0 35.0 37.0 6 36.47000297128704 37.0 37.0 37.0 35.0 37.0 7 36.44414387646063 37.0 37.0 37.0 35.0 37.0 8 36.42879093179737 37.0 37.0 37.0 35.0 37.0 9 38.22346434524476 39.0 39.0 39.0 37.0 39.0 10-11 38.16163507005959 39.0 39.0 39.0 37.0 39.0 12-13 38.13433538349215 39.0 39.0 39.0 37.0 39.0 14-15 39.64509003902023 41.0 40.0 41.0 37.0 41.0 16-17 39.61843837123343 41.0 40.0 41.0 37.0 41.0 18-19 39.62551193922283 41.0 40.0 41.0 37.0 41.0 20-21 39.61664433580282 41.0 40.0 41.0 37.0 41.0 22-23 39.56180078628908 41.0 40.0 41.0 37.0 41.0 24-25 39.49746138299573 41.0 39.5 41.0 37.0 41.0 26-27 39.45061613118422 41.0 39.0 41.0 36.5 41.0 28-29 39.2819284213096 41.0 39.0 41.0 36.0 41.0 30-31 39.19686265138325 41.0 39.0 41.0 36.0 41.0 32-33 39.09439468830401 41.0 39.0 41.0 35.0 41.0 34-35 38.99833252442613 40.0 39.0 41.0 35.0 41.0 36-37 39.094244990964505 40.5 39.0 41.0 35.0 41.0 38-39 39.12057555328393 41.0 39.0 41.0 35.0 41.0 40-41 39.11232347217734 41.0 39.0 41.0 35.0 41.0 42-43 39.0695260505978 40.5 39.0 41.0 35.0 41.0 44-45 39.00220232407236 40.0 39.0 41.0 35.0 41.0 46-47 38.916725425125065 40.0 38.5 41.0 35.0 41.0 48-49 38.83958499210525 40.0 38.0 41.0 35.0 41.0 50-51 38.74839062022593 40.0 38.0 41.0 35.0 41.0 52-53 38.64192560811827 40.0 38.0 41.0 35.0 41.0 54-55 38.51868999361221 40.0 38.0 41.0 35.0 41.0 56-57 38.348058293056056 40.0 37.5 41.0 34.0 41.0 58-59 38.18612516974732 40.0 37.0 41.0 34.0 41.0 60-61 37.9918270806685 39.5 36.5 41.0 34.0 41.0 62-63 37.741768736469396 39.0 36.0 41.0 34.0 41.0 64-65 37.44566537316292 39.0 35.5 40.0 33.0 41.0 66-67 37.11833310852131 38.0 35.0 40.0 33.0 41.0 68-69 36.806489339579734 37.5 35.0 40.0 33.0 41.0 70-71 36.47839381309035 37.0 35.0 39.5 32.5 41.0 72-73 36.13695112954696 36.5 35.0 39.0 32.0 40.5 74-75 35.766887649985556 36.0 35.0 39.0 32.0 40.0 76-77 34.830589066230246 35.0 34.0 37.0 30.5 39.0 78-79 35.06240686861801 35.0 34.0 37.0 31.0 39.0 80-81 34.88329782622113 35.0 34.0 37.0 31.0 39.0 82-83 34.61576529368176 35.0 34.0 36.0 31.0 38.5 84-85 34.366150543162604 35.0 34.0 36.0 31.0 37.0 86-87 34.113158210996176 35.0 34.0 35.5 31.0 37.0 88-89 33.81328391516781 35.0 34.0 35.0 31.0 36.5 90-91 33.73527914225623 35.0 34.0 35.0 31.0 36.0 92-93 33.648424901744505 35.0 34.0 35.0 31.0 36.0 94-95 33.543124056493355 35.0 33.5 35.0 30.0 35.5 96-97 33.506436364314226 35.0 33.0 35.0 30.0 35.0 98-99 33.509254260492355 34.5 33.0 35.0 30.0 35.0 100-101 32.4524576115978 33.5 31.5 34.5 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 0.0 15 0.0 16 0.0 17 1.0 18 0.0 19 6.0 20 29.0 21 148.0 22 627.0 23 2121.0 24 5525.0 25 11776.0 26 21272.0 27 34152.0 28 49125.0 29 66763.0 30 87545.0 31 110306.0 32 142948.0 33 188586.0 34 273029.0 35 418229.0 36 788410.0 37 1863040.0 38 2652930.0 39 1202337.0 40 60801.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.488226695097126 21.025489037502012 15.48215128253488 24.00413298486598 2 13.88570496160447 21.433772376923628 41.29111850968642 23.389404151785477 3 16.873130021723863 26.357052046410235 31.3211077351857 25.448710196680203 4 12.081499253418517 18.580148012990456 38.98735604887649 30.350996684714538 5 13.134255823460162 37.822408494749055 35.66266727120021 13.380668410590566 6 29.778603372104186 38.23491742678239 18.64997281854745 13.336506382565974 7 26.38040799999398 32.98223017238981 23.014306542120725 17.623055285495482 8 24.675342089628103 36.3559589343318 21.035634516405178 17.93306445963492 9 25.487559972605432 16.933751144312087 21.262117489600154 36.31657139348232 10-11 23.980040459206037 26.965224319259917 28.92226061505888 20.132474606475164 12-13 24.958366265829056 24.51216567224837 28.989347603865657 21.54012045805692 14-15 22.13224396989062 25.866178528381873 26.77183846121649 25.229739040511017 16-17 21.62663712294329 29.05188496319765 27.374955754280723 21.94652215957834 18-19 21.66837976236217 28.109525589037993 29.22383355978278 20.998261088817056 20-21 22.492615650853796 27.195847182023087 29.170301742123034 21.141235425000083 22-23 22.247476633733648 27.058071262851197 29.019752290505707 21.67469981290945 24-25 21.989430780373375 27.243912839976065 29.081097871139207 21.685558508511356 26-27 21.86881313893608 27.41510574154499 28.995450150360767 21.720630969158158 28-29 21.82524956022163 27.389884203654336 29.079559665217065 21.705306570906977 30-31 22.093362852286134 27.263607309499367 28.975773334147075 21.667256504067424 32-33 21.914373879494274 27.416469928404375 28.870178114148516 21.79897807795284 34-35 22.043832533821 27.438221971513755 28.875221233793987 21.64272426087126 36-37 22.014718488743547 27.35595555049085 28.8343161896345 21.795009771131106 38-39 21.89996057789959 27.515664569949205 28.866567174310315 21.717807677840888 40-41 22.146474601077898 27.39703536016012 28.682510079831808 21.773979958930177 42-43 22.08958129535591 27.509241606487578 28.4433843828212 21.957792715335316 44-45 22.14921740177089 27.589368422441407 28.265948409459902 21.9954657663278 46-47 22.25902597417084 27.5614827378002 27.984440457644716 22.195050830384243 48-49 22.19155258468593 27.678717033496174 27.964807832382004 22.164922549435893 50-51 22.205276017701554 27.7903361654939 27.831691755969583 22.172696060834962 52-53 22.406641737255043 27.716242123751435 27.674214404948533 22.202901734044993 54-55 22.362922718843045 27.637940278296607 27.70264814225821 22.29648886060214 56-57 22.35337861052671 27.766812836327837 27.64989893495801 22.22990961818744 58-59 22.28089637669183 27.792473434380906 27.722245490217862 22.2043846987094 60-61 22.369531682044418 27.778826523187206 27.672131692855274 22.179510101913106 62-63 22.335559167012693 27.860564657781218 27.60765399160709 22.196222183599005 64-65 22.340264801276483 27.782221161914546 27.612193923324117 22.26532011348485 66-67 22.384346026522433 27.805794100114422 27.48960362798637 22.320256245376775 68-69 22.334433158268194 27.792065253009383 27.587126700478535 22.286374888243884 70-71 22.32373916336008 27.55465215190402 27.653443806031465 22.46816487870443 72-73 22.39737060605537 27.618162784075196 27.52202112306923 22.462445486800203 74-75 22.241131856067632 27.70289753167975 27.51774692361053 22.538223688642088 76-77 22.43495375824595 27.622847968145685 27.477476570329955 22.464721703278403 78-79 22.358389866111043 27.672208480199238 27.4059678267111 22.563433826978617 80-81 22.378179091667857 27.647382669156627 27.395603895076132 22.578834344099384 82-83 22.447904154732207 27.595937663617605 27.474437155440572 22.481721026209613 84-85 22.50747748582138 27.56942601394552 27.431807586369533 22.491288913863567 86-87 22.380377129743888 27.556214217252084 27.521189684728036 22.542218968275993 88-89 22.434172781110355 27.522710031937475 27.49692418514812 22.546193001804053 90-91 22.43939937965733 27.539991953498195 27.55478046805326 22.465828198791215 92-93 22.483240759416084 27.463839200349955 27.568238611509116 22.48468142872485 94-95 22.35697833285233 27.469560870035494 27.61784991354375 22.555610883568427 96-97 22.343203683055616 27.49460036990783 27.66924432559258 22.49295162144397 98-99 22.60669654107269 28.070528173021597 27.724221575194786 21.598553710710927 100-101 23.124036434309588 30.823389812817613 24.832831530361073 21.21974222251172 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2151.0 1 1780.0 2 2025.5 3 2800.0 4 3747.0 5 5645.0 6 7339.0 7 9245.0 8 11043.5 9 11379.0 10 10305.5 11 9367.0 12 10398.5 13 14002.5 14 22811.0 15 35068.5 16 44840.5 17 49825.5 18 50201.0 19 46978.5 20 42014.5 21 37049.5 22 34105.5 23 35460.5 24 41128.5 25 51213.0 26 64920.0 27 79875.0 28 96777.0 29 115288.5 30 132202.5 31 149001.0 32 167742.5 33 187829.5 34 207220.0 35 224188.0 36 243521.5 37 260167.5 38 271966.0 39 283571.5 40 295162.5 41 306039.5 42 312264.0 43 317321.5 44 321974.5 45 325337.0 46 327933.5 47 326709.5 48 324056.5 49 321518.0 50 315992.5 51 307080.0 52 294557.0 53 278564.0 54 261227.5 55 242955.0 56 222618.5 57 200793.0 58 178675.0 59 155500.0 60 130851.0 61 106678.5 62 84625.0 63 65084.5 64 48704.5 65 36300.5 66 27422.0 67 21023.0 68 16110.0 69 12037.0 70 8861.5 71 6468.5 72 4598.0 73 3188.0 74 2157.5 75 1408.5 76 908.0 77 572.5 78 371.5 79 235.0 80 143.5 81 80.0 82 47.0 83 29.5 84 22.0 85 19.0 86 16.0 87 12.0 88 8.0 89 3.5 90 0.5 91 0.5 92 1.0 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 2.5063576895743165E-5 2 0.004924992860013532 3 2.5063576895743165E-5 4 2.5063576895743165E-5 5 1.2531788447871583E-5 6 1.2531788447871583E-5 7 1.2531788447871583E-5 8 0.0 9 2.756993458531748E-4 10-11 8.083003548877171E-4 12-13 0.0 14-15 1.2531788447871583E-5 16-17 0.001522612296416397 18-19 1.2531788447871583E-5 20-21 1.2532040511324799E-5 22-23 7.958303502750158E-4 24-25 0.0028892226292690534 26-27 0.007829795172809033 28-29 0.3666871106395201 30-31 0.33713586483079555 32-33 0.3360307529991897 34-35 0.18775399005607646 36-37 0.049029554805437706 38-39 0.046939350667436194 40-41 0.02675328611208686 42-43 0.026042797835579914 44-45 0.014010317598174083 46-47 0.009723276342599445 48-49 0.009467266330819256 50-51 0.008047575988035138 52-53 0.006915645589629355 54-55 9.34058767593386E-4 56-57 0.0040583983745671156 58-59 0.002743042691575236 60-61 0.005696164901063437 62-63 0.0012783686953632728 64-65 1.1269865162402631E-4 66-67 6.184998861107106E-4 68-69 0.0015863643300309679 70-71 0.0038703376021562565 72-73 0.0018876773447257344 74-75 0.0012999075883878073 76-77 6.712846575877655E-4 78-79 2.486745270926376E-4 80-81 0.0011348805538217103 82-83 0.001170333403348016 84-85 7.782966681664444E-6 86-87 0.004101378519766046 88-89 0.002063781362205661 90-91 0.005238669842801967 92-93 0.014232769039643295 94-95 0.0014870220771272661 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 95.0 20-21 357.0 22-23 842.0 24-25 1915.0 26-27 2692.0 28-29 5087.0 30-31 14106.0 32-33 19555.0 34-35 28553.0 36-37 39122.0 38-39 45206.0 40-41 49662.0 42-43 60392.0 44-45 72923.0 46-47 70968.0 48-49 61459.0 50-51 54352.0 52-53 51711.0 54-55 55688.0 56-57 57706.0 58-59 57363.0 60-61 58303.0 62-63 57825.0 64-65 63675.0 66-67 67755.0 68-69 67237.0 70-71 65493.0 72-73 63802.0 74-75 65618.0 76-77 67656.0 78-79 70284.0 80-81 71117.0 82-83 69219.0 84-85 72059.0 86-87 75577.0 88-89 79287.0 90-91 84807.0 92-93 87316.0 94-95 97320.0 96-97 147231.0 98-99 677581.0 100-101 5120791.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.39322927521775 #Duplication Level Percentage of deduplicated Percentage of total 1 91.0294456141363 79.5535721135218 2 6.497566865221112 11.356867015666529 3 1.4467893787951762 3.793187876819901 4 0.5018603024607324 1.7543676990832369 5 0.2165523087683089 0.9462602785133284 6 0.10249130036168985 0.5374227426734622 7 0.06357764449693062 0.38893789636089804 8 0.037177157371602765 0.2599225470381866 9 0.023141577807488507 0.18201754936081205 >10 0.07966360520867562 1.0574106154943557 >50 0.00139927111080954 0.08285530161387478 >100 2.9246633186803535E-4 0.050772296534669074 >500 2.1253973698610237E-5 0.01376372966771 >1k 2.1253955627542076E-5 0.022642337651218054 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.7595365343614745E-5 0.0 1.2531788447871583E-5 0.0 3 0.0 3.7595365343614745E-5 0.0 1.2531788447871583E-5 0.0 4 0.0 3.7595365343614745E-5 0.0 1.2531788447871583E-5 0.0 5 1.2531788447871583E-5 3.7595365343614745E-5 0.0 1.2531788447871583E-5 0.0 6 6.265894223935792E-5 3.7595365343614745E-5 0.0 1.2531788447871583E-5 0.0 7 6.265894223935792E-5 3.7595365343614745E-5 0.0 1.2531788447871583E-5 0.0 8 6.265894223935792E-5 7.519073068722949E-5 0.0 1.2531788447871583E-5 0.0 9 6.265894223935792E-5 8.772251913510108E-5 0.0 3.7595365343614745E-5 0.0 10-11 8.145662491116528E-5 1.0025430758297266E-4 0.0 4.386125956755054E-5 0.0 12-13 8.772251913510108E-5 1.1905199025478003E-4 0.0 5.012715379148633E-5 0.0 14-15 9.398841335903687E-5 1.8797682671807374E-4 0.0 5.6393048015422124E-5 6.265894223935791E-6 16-17 1.3158377870265163E-4 1.8797682671807374E-4 0.0 1.0652020180690845E-4 1.2531788447871583E-5 18-19 1.378496729265874E-4 2.130404036138169E-4 0.0 1.5664735559839477E-4 1.2531788447871583E-5 20-21 1.4411556715052319E-4 2.3810398050956005E-4 0.0 2.130404036138169E-4 1.2531788447871583E-5 22-23 1.7544503827020215E-4 2.6316755740530325E-4 0.0 4.5741027834731275E-4 1.8797682671807372E-5 24-25 2.0050861516594532E-4 2.6316755740530325E-4 0.0 0.001522612296416397 2.5063576895743165E-5 26-27 2.0050861516594532E-4 2.6316755740530325E-4 0.0 0.0042984034376199525 2.5063576895743165E-5 28-29 2.0050861516594532E-4 2.6316755740530325E-4 0.0 0.020658653256316304 2.5063576895743165E-5 30-31 2.130404036138169E-4 3.634218649882759E-4 0.0 0.02834690546908552 2.5063576895743165E-5 32-33 2.3183808628562426E-4 3.634218649882759E-4 0.0 0.03029559857272955 2.5063576895743165E-5 34-35 2.5063576895743167E-4 4.135490187797622E-4 0.0 0.03312151686772459 3.7595365343614745E-5 36-37 2.756993458531748E-4 4.699420667951843E-4 0.0 0.03726327294974615 3.7595365343614745E-5 38-39 2.756993458531748E-4 5.012715379148633E-4 0.0 0.044162022490299456 3.7595365343614745E-5 40-41 2.756993458531748E-4 5.70196374378157E-4 0.0 0.0574394523508194 3.7595365343614745E-5 42-43 2.756993458531748E-4 5.889940570499644E-4 0.0 0.06446351977585142 3.7595365343614745E-5 44-45 2.8823113430104637E-4 6.641847877371938E-4 0.0 0.07420071939984764 3.7595365343614745E-5 46-47 3.0076292274891796E-4 7.268437299765518E-4 0.0 0.0847336875902837 3.7595365343614745E-5 48-49 3.1329471119678954E-4 7.331096242004875E-4 0.0 0.09500348822331448 5.012715379148633E-5 50-51 3.2582649964466113E-4 8.834910855749466E-4 0.0 0.10412663021336498 5.012715379148633E-5 52-53 3.2582649964466113E-4 9.02288768246754E-4 0.0 0.1158062570467813 5.012715379148633E-5 54-55 3.2582649964466113E-4 9.336182393664329E-4 0.0 0.13896500209844798 5.6393048015422124E-5 56-57 3.2582649964466113E-4 9.524159220382402E-4 0.0 0.16427921476314855 6.265894223935792E-5 58-59 3.2582649964466113E-4 9.524159220382402E-4 0.0 0.18793296545850618 6.265894223935792E-5 60-61 3.320923938685969E-4 9.58681816262176E-4 0.0 0.205320821929928 6.265894223935792E-5 62-63 3.383582880925327E-4 9.774794989339834E-4 0.0 0.21504548976547636 7.519073068722949E-5 64-65 3.383582880925327E-4 0.0011027973834126991 0.0 0.22508971820644544 7.519073068722949E-5 66-67 3.508900765404043E-4 0.0011215950660845068 0.0 0.2313493465361573 7.519073068722949E-5 68-69 3.508900765404043E-4 0.0011278609603084424 0.0 0.23748992287561435 7.519073068722949E-5 70-71 3.508900765404043E-4 0.001134126854532378 0.0 0.24303523926379753 8.772251913510108E-5 72-73 3.5715597076434007E-4 0.001140392748756314 0.0 0.24715819766314728 1.0025430758297266E-4 74-75 3.7595365343614747E-4 0.0011466586429802498 0.0 0.25065456664010344 1.0025430758297266E-4 76-77 3.7595365343614747E-4 0.0011591904314281214 0.0 0.25414466972283567 1.1278609603084425E-4 78-79 3.7595365343614747E-4 0.0011654563256520572 0.0 0.25688286549869566 1.2531788447871583E-4 80-81 3.7595365343614747E-4 0.0011717222198759929 0.0 0.25819870328572214 1.378496729265874E-4 82-83 3.7595365343614747E-4 0.0011779881140999288 0.0 0.25868117714096517 1.5038146137445898E-4 84-85 3.7595365343614747E-4 0.0011905199025478003 0.0 0.25906339668862527 1.5038146137445898E-4 86-87 3.7595365343614747E-4 0.0012155834794435436 0.0 0.2591949804673279 1.5038146137445898E-4 88-89 3.7595365343614747E-4 0.0012531788447871582 0.0 0.25922004404422366 1.5038146137445898E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10500 0.0 53.966297 1 GTATCAA 19425 0.0 38.238518 1 TCAACGC 24205 0.0 29.976488 4 ATCAACG 24510 0.0 29.638334 3 TATCAAC 25030 0.0 29.24663 2 CAACGCA 24910 0.0 29.128647 5 AACGCAG 25660 0.0 28.277264 6 ACGCAGA 29695 0.0 24.434908 7 CGCAGAG 30420 0.0 23.824305 8 GTGGTAT 4595 0.0 21.877487 1 GCAGAGT 34260 0.0 21.041124 9 TGGTATC 4750 0.0 20.078278 2 GAGTACT 20250 0.0 20.058235 12-13 GTACATG 24325 0.0 19.444715 1 AGAGTAC 31315 0.0 19.144402 10-11 CAGAGTA 33440 0.0 19.07121 10-11 TACATGG 24370 0.0 18.932842 2 ACATGGG 24555 0.0 18.439713 3 GTACTTT 22480 0.0 18.078197 14-15 AGTACTT 22345 0.0 17.081785 12-13 >>END_MODULE