##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139620_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7466520 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.95467433288868 34.0 31.0 34.0 31.0 34.0 2 33.078637437521095 34.0 33.0 34.0 31.0 34.0 3 33.13690943036381 34.0 33.0 34.0 31.0 34.0 4 36.48488010478777 37.0 37.0 37.0 35.0 37.0 5 36.451905974938796 37.0 37.0 37.0 35.0 37.0 6 36.4810270380311 37.0 37.0 37.0 35.0 37.0 7 36.45607699436953 37.0 37.0 37.0 35.0 37.0 8 36.44298588900853 37.0 37.0 37.0 35.0 37.0 9 38.24170403347209 39.0 39.0 39.0 37.0 39.0 10-11 38.18439266217729 39.0 39.0 39.0 37.0 39.0 12-13 38.155454147313606 39.0 39.0 39.0 37.0 39.0 14-15 39.6753621499708 41.0 40.0 41.0 37.0 41.0 16-17 39.64826458644723 41.0 40.0 41.0 37.0 41.0 18-19 39.65860802622909 41.0 40.0 41.0 37.0 41.0 20-21 39.65340527900116 41.0 40.0 41.0 37.0 41.0 22-23 39.59626704779208 41.0 40.0 41.0 37.0 41.0 24-25 39.53203129596028 41.0 40.0 41.0 37.0 41.0 26-27 39.48383637342455 41.0 39.5 41.0 37.0 41.0 28-29 39.318045822223255 41.0 39.0 41.0 36.0 41.0 30-31 39.23559158827227 41.0 39.0 41.0 36.0 41.0 32-33 39.132668834882324 41.0 39.0 41.0 35.5 41.0 34-35 39.03565331708798 40.5 39.0 41.0 35.0 41.0 36-37 39.12719791886643 40.5 39.0 41.0 35.0 41.0 38-39 39.153803508094526 41.0 39.0 41.0 35.0 41.0 40-41 39.146592311668414 41.0 39.0 41.0 35.0 41.0 42-43 39.105299215224235 41.0 39.0 41.0 35.0 41.0 44-45 39.03812400438268 40.5 39.0 41.0 35.0 41.0 46-47 38.95322185268533 40.0 39.0 41.0 35.0 41.0 48-49 38.878027049804615 40.0 38.5 41.0 35.0 41.0 50-51 38.78728976563286 40.0 38.0 41.0 35.0 41.0 52-53 38.68388658473572 40.0 38.0 41.0 35.0 41.0 54-55 38.56091203317658 40.0 38.0 41.0 35.0 41.0 56-57 38.392137033580255 40.0 37.5 41.0 34.0 41.0 58-59 38.23092947422803 40.0 37.0 41.0 34.0 41.0 60-61 38.03781281737362 40.0 36.5 41.0 34.0 41.0 62-63 37.78726703788624 39.0 36.0 41.0 34.0 41.0 64-65 37.49170495738333 39.0 35.5 40.5 33.5 41.0 66-67 37.17089607810969 38.5 35.0 40.0 33.0 41.0 68-69 36.859489668516915 37.5 35.0 40.0 33.0 41.0 70-71 36.53441919281053 37.0 35.0 39.5 33.0 41.0 72-73 36.192695605916214 36.5 35.0 39.0 32.0 41.0 74-75 35.822988974097065 36.0 35.0 39.0 32.0 40.0 76-77 34.886665053760765 35.0 34.0 37.0 30.5 39.0 78-79 35.11621458620952 35.0 34.0 37.0 31.5 39.0 80-81 34.93290609424453 35.0 34.0 37.0 32.0 39.0 82-83 34.66382197662735 35.0 34.0 36.0 31.0 38.5 84-85 34.413531006497934 35.0 34.0 36.0 31.0 37.0 86-87 34.162696757935635 35.0 34.0 35.5 31.0 37.0 88-89 33.86159443388648 35.0 34.0 35.0 31.0 36.5 90-91 33.78214929687998 35.0 34.0 35.0 31.0 36.0 92-93 33.69617919294083 35.0 34.0 35.0 31.0 36.0 94-95 33.58953229702439 35.0 34.0 35.0 31.0 35.5 96-97 33.553914961479876 35.0 33.0 35.0 31.0 35.0 98-99 33.552553938605314 35.0 33.0 35.0 31.0 35.0 100-101 32.48999282907391 34.0 31.5 34.5 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 10.0 20 31.0 21 153.0 22 638.0 23 2244.0 24 5502.0 25 11438.0 26 20309.0 27 31968.0 28 45615.0 29 61415.0 30 79486.0 31 100776.0 32 127471.0 33 169465.0 34 247585.0 35 378146.0 36 713550.0 37 1714091.0 38 2506447.0 39 1186553.0 40 63624.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.76689532750009 20.802845557038175 15.27516779242584 24.155091323035897 2 13.856693780295226 21.363574873662454 41.399644527069654 23.380086818972664 3 17.001005957664063 26.379234119469626 31.134463364912985 25.485296557953323 4 12.021214175230565 18.52127303801759 38.9674328739893 30.490079912762535 5 13.115968262042395 37.85746419649215 35.59270005010368 13.43386749136177 6 29.711885742709754 38.21992235469362 18.676043997489057 13.392147905107562 7 26.33219746235092 32.946914873427595 23.032533107471664 17.68835455674982 8 24.604139545598215 36.40728210732711 21.0702040575797 17.918374289494974 9 25.527884409593675 16.884733975829647 21.340153662317373 36.2472279522593 10-11 23.99178459403787 26.944770346322084 28.923619760904096 20.139825298735946 12-13 24.926391411259864 24.553754627323038 28.987480111216467 21.532373850200628 14-15 22.089098291867774 25.925357710247265 26.75786089312314 25.227683104761816 16-17 21.542159121881117 29.070223125824107 27.416477653599486 21.97114009869529 18-19 21.59217413199188 28.1066480770158 29.271762481048736 21.029415309943587 20-21 22.436827158967645 27.213672862394777 29.24042451088419 21.10907546775339 22-23 22.149277781051932 27.129521235273003 29.082023820366786 21.639177163308275 24-25 21.87360845193141 27.28868295986929 29.16706855780561 21.670640030393688 26-27 21.792156519592755 27.450010579523376 29.09453350198036 21.663299398903508 28-29 21.721469384416526 27.446016578575495 29.09644799392133 21.736066043086648 30-31 21.966382976174025 27.338390088148444 29.0352218830065 21.660005052671032 32-33 21.817083443281202 27.497948089497292 28.918562221858878 21.766406245362628 34-35 21.920365999656557 27.52068252850726 28.947487528603855 21.61146394323233 36-37 21.917577696187156 27.443899975042267 28.853625740771804 21.784896587998773 38-39 21.80107520289148 27.59815266093505 28.90483154618797 21.6959405899855 40-41 22.053097461570704 27.469809899626856 28.737972632284 21.73912000651844 42-43 21.96669705690348 27.59417172620524 28.484861197716654 21.954270019174622 44-45 22.02261623803106 27.679668176962913 28.336597287034067 21.96111829797196 46-47 22.149884021312356 27.644508770058003 28.0234549517579 22.182152256871742 48-49 22.087188205664184 27.76270886488948 27.989571594807877 22.160531334638456 50-51 22.078637781043557 27.905309588940337 27.861434069769945 22.15461856024616 52-53 22.27097474054699 27.796153887188723 27.710902260083643 22.221969112180645 54-55 22.235523277338668 27.704099098896286 27.7494367829431 22.310940840821956 56-57 22.27412732547077 27.865858314662358 27.683720674159655 22.17629368570722 58-59 22.153428646282833 27.898832768124603 27.753605166509022 22.19413341908354 60-61 22.291046447754066 27.859719276863487 27.698639471936954 22.150594803445493 62-63 22.22567289416614 27.94498522904717 27.65053456263334 22.178807314153353 64-65 22.227650297511445 27.868218917843528 27.654643673400315 22.249487111244708 66-67 22.280503950393815 27.911343928868448 27.485109583679858 22.323042537057873 68-69 22.209798482969052 27.899741530808665 27.58522268658339 22.305237299638897 70-71 22.216221244858307 27.68052182821725 27.64392591702468 22.459331009899767 72-73 22.27602398400856 27.716892945632022 27.541741490374072 22.465341579985346 74-75 22.196192182321067 27.822163488316896 27.489352160518493 22.492292168843544 76-77 22.295654112691416 27.739094962681186 27.483221613965043 22.482029310662355 78-79 22.249819394952798 27.738759872399488 27.44633392046884 22.565086812178865 80-81 22.298116473028667 27.744502737437838 27.40185823861554 22.555522550917953 82-83 22.354434271222267 27.66417399944856 27.506966481707206 22.47442524762197 84-85 22.36534475687971 27.666463617823535 27.494494478450488 22.473697146846273 86-87 22.293483450220954 27.64503085575047 27.568714910794384 22.492770783234192 88-89 22.381027877206755 27.60139499891942 27.5262657913766 22.491311332497226 90-91 22.362612850278595 27.630526368212223 27.558479455790273 22.44838132571891 92-93 22.395678071344104 27.520303853158122 27.612154196965566 22.471863878532204 94-95 22.278527847218694 27.523349311690176 27.654621547235912 22.54350129385522 96-97 22.28158166301137 27.54282003631408 27.710075616955542 22.465522683719005 98-99 22.524617611169443 28.129212898587742 27.739076969645378 21.607092520597444 100-101 23.04507393513 30.855967957389336 24.913975913044123 21.184982194436543 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1817.0 1 1552.5 2 1854.5 3 2558.5 4 3550.0 5 5700.5 6 7428.0 7 8910.0 8 10158.0 9 10342.5 10 9666.5 11 9040.5 12 10149.5 13 13726.5 14 22269.5 15 34012.0 16 43410.5 17 48600.5 18 49217.5 19 45756.0 20 40607.0 21 35902.0 22 33429.0 23 34753.5 24 40098.0 25 49634.5 26 62477.5 27 77229.0 28 93267.0 29 110102.0 30 126016.0 31 142400.0 32 160938.0 33 180127.5 34 197995.5 35 213935.5 36 233086.0 37 248568.0 38 258208.5 39 268358.0 40 278372.0 41 286927.5 42 291284.5 43 295317.0 44 300592.5 45 304394.5 46 305512.5 47 303712.5 48 300317.0 49 297111.0 50 292421.0 51 283756.0 52 271218.0 53 256563.5 54 241592.5 55 225912.5 56 208283.0 57 188804.5 58 168383.0 59 145906.5 60 122837.0 61 100944.5 62 79816.5 63 61380.0 64 46354.5 65 34733.5 66 26433.5 67 20360.5 68 15536.5 69 11455.0 70 8374.0 71 6132.5 72 4326.0 73 2986.0 74 2004.5 75 1310.5 76 858.5 77 546.0 78 348.0 79 230.5 80 151.0 81 96.0 82 67.5 83 49.0 84 34.0 85 25.0 86 21.0 87 16.5 88 13.0 89 9.0 90 5.0 91 3.5 92 3.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 4.017936066601308E-5 2 0.005491179291021788 3 4.017936066601308E-5 4 4.017936066601308E-5 5 4.017936066601308E-5 6 4.017936066601308E-5 7 4.017936066601308E-5 8 0.0 9 2.410761639960785E-4 10-11 8.035872133202617E-4 12-13 0.0 14-15 2.678624044400872E-5 16-17 0.0014062776233104578 18-19 0.0 20-21 0.0 22-23 8.103466669738394E-4 24-25 0.0028399500597461194 26-27 0.00761078142224334 28-29 0.3637432560922622 30-31 0.3345170230594745 32-33 0.33349658466340587 34-35 0.1879919398312516 36-37 0.05209684026637505 38-39 0.05036538908437602 40-41 0.03095163536370261 42-43 0.030123556938834076 44-45 0.0179861471181948 46-47 0.012614719276113294 48-49 0.012579432053897013 50-51 0.011346816298692849 52-53 0.009363393743681602 54-55 0.0022294343576458597 56-57 0.006098215382525018 58-59 0.004930984304927936 60-61 0.008247606240222251 62-63 0.0028975796427164195 64-65 4.845871381941815E-4 66-67 8.484713489188602E-4 68-69 0.0016289647535260524 70-71 0.004382271637056832 72-73 0.002354405975498114 74-75 0.001582291816911503 76-77 6.505620695648431E-4 78-79 1.7857545811504513E-4 80-81 0.0012639914206171938 82-83 0.0014026555007542385 84-85 0.0 86-87 0.004091521738798271 88-89 0.0017959192932774015 90-91 0.005223672429770336 92-93 0.014452728497681692 94-95 0.001613315662149114 96-97 9.117725980786945E-6 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 74.0 20-21 357.0 22-23 759.0 24-25 1714.0 26-27 2546.0 28-29 5091.0 30-31 14305.0 32-33 19358.0 34-35 28748.0 36-37 39040.0 38-39 44424.0 40-41 48102.0 42-43 58750.0 44-45 70652.0 46-47 69752.0 48-49 60467.0 50-51 53314.0 52-53 50602.0 54-55 54493.0 56-57 56364.0 58-59 56275.0 60-61 56798.0 62-63 56072.0 64-65 61158.0 66-67 64565.0 68-69 64516.0 70-71 63178.0 72-73 61192.0 74-75 62551.0 76-77 64540.0 78-79 67922.0 80-81 67846.0 82-83 66032.0 84-85 67351.0 86-87 70533.0 88-89 74466.0 90-91 79624.0 92-93 82074.0 94-95 90224.0 96-97 135988.0 98-99 625687.0 100-101 4749016.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.14519895461626 #Duplication Level Percentage of deduplicated Percentage of total 1 90.91066771077037 79.22428224752092 2 6.592116288102172 11.489425709172604 3 1.4367949298967935 3.7562934006852005 4 0.49751989669778207 1.7342588152643341 5 0.2273443225316025 0.9905983109109475 6 0.11804336135045937 0.6172147326094465 7 0.06622286461936279 0.40397032988192927 8 0.04278212305104898 0.298260529998763 9 0.022219742601404524 0.17427095007477839 >10 0.08469708542451906 1.1372973718021036 >50 0.0011388911194684902 0.06402892864971739 >100 4.070694082504182E-4 0.07328842822618378 >500 2.2857215366095578E-5 0.015337603670827218 >1k 2.285721152656505E-5 0.021472641532206196 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.3393120222004361E-5 2.6786240444008722E-5 2 0.0 1.3393120222004361E-5 0.0 2.6786240444008722E-5 2.6786240444008722E-5 3 0.0 1.3393120222004361E-5 0.0 2.6786240444008722E-5 2.6786240444008722E-5 4 0.0 4.017936066601308E-5 0.0 5.3572480888017444E-5 2.6786240444008722E-5 5 1.3393120222004361E-5 5.3572480888017444E-5 0.0 6.69656011100218E-5 2.6786240444008722E-5 6 8.035872133202617E-5 5.3572480888017444E-5 0.0 6.69656011100218E-5 4.017936066601308E-5 7 8.035872133202617E-5 6.69656011100218E-5 0.0 6.69656011100218E-5 4.017936066601308E-5 8 9.375184155403053E-5 8.035872133202617E-5 0.0 6.69656011100218E-5 4.017936066601308E-5 9 9.375184155403053E-5 1.741105628860567E-4 0.0 6.69656011100218E-5 4.017936066601308E-5 10-11 9.375184155403053E-5 1.741105628860567E-4 0.0 8.705528144302835E-5 4.017936066601308E-5 12-13 9.375184155403053E-5 1.808071229970589E-4 0.0 9.375184155403053E-5 4.017936066601308E-5 14-15 1.0044840166503271E-4 2.0089680333006541E-4 0.0 9.375184155403053E-5 4.017936066601308E-5 16-17 1.4732432244204797E-4 2.0089680333006541E-4 0.0 1.2053808199803925E-4 4.017936066601308E-5 18-19 1.5402088255305016E-4 2.3437960388507633E-4 0.0 1.4062776233104578E-4 4.017936066601308E-5 20-21 1.6071744266405233E-4 2.745589645510894E-4 0.0 1.9420024321906322E-4 4.017936066601308E-5 22-23 1.6071744266405233E-4 3.750073662161221E-4 0.0 4.888488881031592E-4 4.017936066601308E-5 24-25 2.1428992355206978E-4 4.2857984710413955E-4 0.0 0.001520119145197495 4.017936066601308E-5 26-27 2.2768304377407414E-4 4.419729673261439E-4 0.0 0.004540267755259479 4.017936066601308E-5 28-29 2.2768304377407414E-4 4.553660875481482E-4 0.0 0.021864268762422118 4.017936066601308E-5 30-31 2.410761639960785E-4 5.089385684361657E-4 0.0 0.029726030332738677 4.017936066601308E-5 32-33 2.678624044400872E-4 5.156351285471679E-4 0.0 0.03174839148626134 4.017936066601308E-5 34-35 2.879520847730938E-4 5.826007296571897E-4 0.0 0.03490247129854336 4.017936066601308E-5 36-37 3.080417651061003E-4 6.428697706562093E-4 0.0 0.039476221854357854 4.017936066601308E-5 38-39 3.080417651061003E-4 6.495663307672114E-4 0.0 0.04670181021412921 4.017936066601308E-5 40-41 3.2143488532810466E-4 7.232284919882354E-4 0.0 0.06039627564112866 4.017936066601308E-5 42-43 3.2143488532810466E-4 7.567112925432463E-4 0.0 0.06745444999812497 4.6875920777015263E-5 44-45 3.2143488532810466E-4 8.638562543192812E-4 0.0 0.07733187616185318 5.3572480888017444E-5 46-47 3.2143488532810466E-4 9.442149756513074E-4 0.0 0.08866245586966887 6.69656011100218E-5 48-49 3.34828005550109E-4 9.509115357623097E-4 0.0 0.09879435131761516 6.69656011100218E-5 50-51 3.34828005550109E-4 0.001151808339092375 0.0 0.10855793595945634 6.69656011100218E-5 52-53 3.34828005550109E-4 0.0011919876997583882 0.0 0.1200827159104911 7.366216122102399E-5 54-55 3.34828005550109E-4 0.0011919876997583882 0.0 0.1438086283837718 8.035872133202617E-5 56-57 3.482211257721134E-4 0.001225470500313399 0.0 0.16878679759780996 8.035872133202617E-5 58-59 3.482211257721134E-4 0.0012522567407574077 0.0 0.19476945082849842 8.705528144302835E-5 60-61 3.683108061051199E-4 0.0013125257817564275 0.0 0.21287025280853733 9.375184155403053E-5 62-63 3.750073662161221E-4 0.0013259189019784318 0.0 0.22316956225925866 1.339312022200436E-4 64-65 3.750073662161221E-4 0.0014732432244204798 0.0 0.2330603815432089 1.339312022200436E-4 66-67 3.750073662161221E-4 0.001486636344642484 0.0 0.23911407188355485 1.339312022200436E-4 68-69 4.0179360666013083E-4 0.0015067260249754908 0.0 0.24497356198068176 1.339312022200436E-4 70-71 4.0179360666013083E-4 0.001520119145197495 0.0 0.25026384446837346 1.339312022200436E-4 72-73 4.2857984710413955E-4 0.001526815705308497 0.0 0.2546768775815239 1.4732432244204797E-4 74-75 4.2857984710413955E-4 0.0015803881861965146 0.0 0.25807873011791305 1.4732432244204797E-4 76-77 4.419729673261439E-4 0.0016875331479725495 0.0 0.26148727921441317 1.4732432244204797E-4 78-79 4.419729673261439E-4 0.0017277125086385626 0.0 0.264031972056594 1.4732432244204797E-4 80-81 4.553660875481483E-4 0.0017277125086385626 0.0 0.26529092535746235 1.4732432244204797E-4 82-83 4.553660875481483E-4 0.0017277125086385626 0.0 0.26561236024279045 1.6071744266405233E-4 84-85 4.553660875481483E-4 0.0017411056288605669 0.0 0.26575298800512154 1.6071744266405233E-4 86-87 4.553660875481483E-4 0.0017411056288605669 0.0 0.26583334672645353 1.6071744266405233E-4 88-89 4.687592077701526E-4 0.0019085196316356214 0.0 0.2658668295270086 1.6071744266405233E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9950 0.0 52.75757 1 GTATCAA 18455 0.0 39.015152 1 TCAACGC 23215 0.0 30.387695 4 ATCAACG 23285 0.0 30.369835 3 TATCAAC 23970 0.0 29.645914 2 CAACGCA 23885 0.0 29.536081 5 AACGCAG 24365 0.0 28.936651 6 ACGCAGA 27750 0.0 25.422316 7 CGCAGAG 28430 0.0 24.829304 8 GTGGTAT 4700 0.0 23.39368 1 TGGTATC 4525 0.0 22.596573 2 GCAGAGT 32330 0.0 21.728258 9 GTACATG 23375 0.0 20.846607 1 TACATGG 23320 0.0 20.088562 2 GAGTACT 19155 0.0 19.76612 12-13 ACATGGG 23565 0.0 19.515821 3 AGAGTAC 29735 0.0 19.286953 10-11 CAGAGTA 32120 0.0 18.853807 10-11 GTACTTT 21305 0.0 17.711235 14-15 AGTACTT 20880 0.0 17.282835 12-13 >>END_MODULE