##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139618_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5979594 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.306962981098717 32.0 25.0 33.0 18.0 33.0 2 29.569877486665483 31.0 28.0 33.0 18.0 33.0 3 31.993693050063264 33.0 31.0 33.0 29.0 34.0 4 31.860833026456312 33.0 31.0 33.0 29.0 34.0 5 32.84681351275689 33.0 33.0 34.0 32.0 34.0 6 36.81676214137615 38.0 37.0 38.0 35.0 38.0 7 36.98576374917762 38.0 38.0 38.0 35.0 38.0 8 37.12255531061139 38.0 38.0 38.0 36.0 38.0 9 37.206858860317276 38.0 38.0 38.0 36.0 38.0 10-11 37.31588357002164 38.0 38.0 38.0 36.5 38.0 12-13 37.3743026700475 38.0 38.0 38.0 37.0 38.0 14-15 37.38203965018361 38.0 38.0 38.0 37.0 38.0 16-17 37.43235025655588 38.0 38.0 38.0 37.0 38.0 18-19 37.42262551604674 38.0 38.0 38.0 37.0 38.0 20-21 37.441595692243766 38.0 38.0 38.0 37.0 38.0 22-23 37.45190815861055 38.0 38.0 38.0 37.0 38.0 24-25 37.46184018222453 38.0 38.0 38.0 37.0 38.0 26-27 37.41999373581778 38.0 38.0 38.0 37.0 38.0 28-29 37.38627520307109 38.0 38.0 38.0 37.0 38.0 30-31 37.39947117451082 38.0 38.0 38.0 37.0 38.0 32-33 37.38415289479826 38.0 38.0 38.0 37.0 38.0 34-35 37.345102139941375 38.0 38.0 38.0 37.0 38.0 36-37 37.3222908778084 38.0 38.0 38.0 37.0 38.0 38-39 37.28895096197573 38.0 38.0 38.0 37.0 38.0 40-41 37.35748416216329 38.0 38.0 38.0 37.0 38.0 42-43 37.333841604389605 38.0 38.0 38.0 37.0 38.0 44-45 37.30129742246875 38.0 38.0 38.0 37.0 38.0 46-47 37.28499886857658 38.0 38.0 38.0 37.0 38.0 48-49 37.233319561817844 38.0 38.0 38.0 37.0 38.0 50-51 37.191977653172245 38.0 38.0 38.0 37.0 38.0 52-53 37.17798633144096 38.0 38.0 38.0 37.0 38.0 54-55 37.157373583379 38.0 38.0 38.0 36.5 38.0 56-57 37.11120377217723 38.0 38.0 38.0 36.0 38.0 58-59 37.08096187183444 38.0 38.0 38.0 36.0 38.0 60-61 37.09718227379974 38.0 38.0 38.0 36.0 38.0 62-63 37.10491379413473 38.0 38.0 38.0 36.0 38.0 64-65 37.112659908859726 38.0 38.0 38.0 36.0 38.0 66-67 37.10780356303624 38.0 38.0 38.0 36.0 38.0 68-69 37.092619356431904 38.0 38.0 38.0 36.0 38.0 70-71 37.092133614451484 38.0 38.0 38.0 36.0 38.0 72-73 37.085489617665516 38.0 38.0 38.0 36.0 38.0 74-75 37.07460532704376 38.0 38.0 38.0 36.0 38.0 76-77 37.06464732676988 38.0 38.0 38.0 36.0 38.0 78-79 37.07768187438548 38.0 38.0 38.0 36.0 38.0 80-81 37.085895242137454 38.0 38.0 38.0 36.0 38.0 82-83 37.04690614983938 38.0 38.0 38.0 36.0 38.0 84-85 37.03941572507955 38.0 38.0 38.0 36.0 38.0 86-87 37.04546897615952 38.0 38.0 38.0 36.0 38.0 88-89 37.036740850184074 38.0 38.0 38.0 36.0 38.0 90-91 37.01829351146755 38.0 38.0 38.0 36.0 38.0 92-93 37.01524585612764 38.0 38.0 38.0 36.0 38.0 94-95 37.00218050654305 38.0 38.0 38.0 36.0 38.0 96-97 36.978222921083486 38.0 38.0 38.0 36.0 38.0 98-99 36.948209742889375 38.0 38.0 38.0 35.5 38.0 100 35.66068040576435 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 6.0 18 7.0 19 18.0 20 46.0 21 104.0 22 326.0 23 992.0 24 2304.0 25 4774.0 26 8859.0 27 14680.0 28 22937.0 29 33844.0 30 45623.0 31 59606.0 32 77436.0 33 103895.0 34 158415.0 35 297074.0 36 896922.0 37 4251726.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.384832147466874 21.364276571285608 13.807158144850638 24.443733136396887 2 14.889184352683424 20.269947987222583 42.42006589400097 22.42080176609302 3 18.011294155109162 26.41354214887975 30.707351402554377 24.86781229345671 4 12.765314835756408 18.4030220111934 37.71655734486321 31.11510580818698 5 13.470379427098228 37.27291518454263 35.87631534850025 13.380390039858895 6 29.93131954506473 37.771474097829014 18.338373824498593 13.958832532607662 7 26.35946520783852 32.52538550276156 22.432258778773274 18.682890510626642 8 24.05701791793891 37.24426775463351 21.137371533920195 17.561342793507386 9 25.055848273310865 17.026373362472434 20.912774345549213 37.005004018667485 10-11 24.138118741841 26.66752960150806 28.868506791598225 20.325844865052712 12-13 25.15879840671457 23.98059968619943 28.729935510671794 22.130666396414206 14-15 22.263927952299102 25.55443563559666 25.898806842069877 26.282829570034355 16-17 22.085588085077347 29.112285884292476 26.62056152976272 22.181564500867452 18-19 22.191623712245345 27.755596784664643 28.355938546998345 21.696840956091666 20-21 22.702801327597758 26.87595262631361 28.300715341460403 22.12053070462823 22-23 22.446330465834908 27.455676532195866 28.14327072769201 21.954722274277216 24-25 22.462389627163247 27.753327837776652 28.25608179074306 21.528200744317036 26-27 22.41528392979587 27.98361609243587 28.252278920878922 21.34882105688934 28-29 22.19422211016599 27.56287703396779 28.400099444794456 21.84280141107176 30-31 22.8413096877709 27.3215814866818 28.35604202889723 21.481066796650065 32-33 22.255834837738462 27.598801404242128 28.522403945587715 21.622959812431695 34-35 22.337021564121624 26.98506730980447 28.757790069070666 21.920121057003236 36-37 21.993189675780247 27.609564000664804 28.57290857159218 21.824337751962766 38-39 21.938285225269908 26.831248612197683 29.100338992709084 22.13012716982333 40-41 22.13737558687181 26.732997420286104 29.160915422488838 21.968711570353253 42-43 22.52329650576648 26.612994804072542 28.955818690936486 21.90788999922449 44-45 21.926472522574144 27.219610190186405 28.87983204712079 21.97408524011866 46-47 22.674120230081876 26.6129629192299 28.255886251941696 22.457030598746528 48-49 22.40617803092431 26.7093973000734 28.257365061485363 22.62705960751693 50-51 22.01134100375859 26.93051910352544 28.70406382528793 22.35407606742804 52-53 22.18948493236878 27.00257470532823 29.097460913839583 21.710479448463403 54-55 22.14199153112498 27.091900767150754 28.44095759522793 22.325150106496334 56-57 22.605408941761944 27.638960993614862 27.68819333479738 22.06743672982581 58-59 21.80311269343083 28.1579123515934 28.576522280713494 21.462452674262273 60-61 22.364157193484665 28.927300262607652 27.36283989986511 21.345702644042575 62-63 21.750035103211943 29.49164600211951 27.407662500015345 21.350656394653207 64-65 21.722343187625352 29.329063674356554 27.45951856532742 21.489074572690665 66-67 21.868150808343493 29.204861441873252 27.389752590024575 21.537235159758676 68-69 21.989254131152766 28.74707137139706 27.607074935448132 21.65659956200204 70-71 22.158015572288363 28.103260960437087 27.878829076658366 21.85989439061618 72-73 22.413277283375827 27.725664744484256 27.826321402114235 22.03473657002568 74-75 22.229177796864693 27.736888204787665 27.92444322926464 22.109490769083003 76-77 22.4008979413053 27.6134616815015 27.77255390540418 22.213086471789023 78-79 22.369303968660446 27.56792068795389 27.78098841758645 22.28178692579922 80-81 22.381658470168205 27.65469635674093 27.699033312965625 22.26461186012524 82-83 22.453413280295152 27.539173293061182 27.81100604786279 22.196407378780876 84-85 22.451712207774303 27.558402054304647 27.758102180975282 22.23178355694577 86-87 22.402755055379306 27.58343289361435 27.792359884929674 22.221452166076666 88-89 22.47929677192365 27.574918638402675 27.74931832175213 22.19646626792154 90-91 22.519454625734397 27.566763348779055 27.764344354323416 22.149437671163135 92-93 22.566050366294913 27.55464302304318 27.719085447907517 22.160221162754393 94-95 22.374839787358315 27.576782444842923 27.807709141926267 22.240668625872495 96-97 22.53067730960246 27.663059232943443 27.829359914966727 21.97690354248737 98-99 23.54696054595256 29.618485240557916 28.017784017083592 18.81677019640593 100 30.03793851697571 40.609250842531615 29.35281064049267 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1273.0 1 1113.0 2 1184.5 3 1566.5 4 1977.0 5 2646.5 6 3347.0 7 4365.0 8 5647.5 9 6456.0 10 6597.0 11 6804.5 12 7662.5 13 9534.0 14 13232.5 15 17284.0 16 20146.0 17 21765.0 18 21760.5 19 20315.0 20 18570.5 21 17497.0 22 17828.0 23 20134.0 24 24867.0 25 32172.5 26 41896.5 27 53265.0 28 65146.5 29 78485.0 30 92283.5 31 105847.0 32 121887.0 33 139004.5 34 153817.5 35 169181.5 36 187145.5 37 201342.0 38 213322.5 39 223555.0 40 231707.5 41 238748.5 42 245974.5 43 271373.0 44 297403.5 45 302410.0 46 290951.0 47 272145.0 48 258256.0 49 249438.0 50 243249.5 51 235847.5 52 226435.5 53 214080.0 54 198909.0 55 183778.5 56 167223.5 57 149326.5 58 132722.0 59 114832.5 60 96085.0 61 77996.5 62 61894.5 63 48078.5 64 35915.5 65 26873.5 66 20302.0 67 15600.5 68 12024.0 69 9108.0 70 6786.0 71 4948.5 72 3569.0 73 2479.0 74 1706.5 75 1109.0 76 733.5 77 509.5 78 354.5 79 232.0 80 142.5 81 85.5 82 47.0 83 26.0 84 22.0 85 17.5 86 12.5 87 9.5 88 6.0 89 4.0 90 4.0 91 3.5 92 3.0 93 2.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.004916721770742294 3 0.0036457324694619737 4 0.0 5 0.0 6 3.010237818821813E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 2.843386362767762E-4 26-27 0.0018066100852000663 28-29 0.0070118558098036625 30-31 0.002404456370845925 32-33 0.00497290021388511 34-35 0.0026214169087122327 36-37 0.0010334481420804836 38-39 3.412190477002902E-5 40-41 8.593023822354012E-5 42-43 0.002129149352903043 44-45 6.022470623435685E-4 46-47 3.789096759520392E-4 48-49 0.0018945308452302605 50-51 4.1270510883168295E-4 52-53 0.0 54-55 0.00497362022802318 56-57 0.05000672725945226 58-59 0.07514920062261186 60-61 0.03608745767319853 62-63 0.015266503874312016 64-65 0.0016789868687963343 66-67 0.0 68-69 0.0024896766635352937 70-71 0.004150075900608768 72-73 0.015336094302706766 74-75 0.018643600826904548 76-77 0.02429181911022537 78-79 0.006700319246207823 80-81 0.008894033759768665 82-83 0.036573745893717334 84-85 0.021118082387659286 86-87 0.015457968142008796 88-89 0.007475912171224773 90-91 6.669771815989889E-5 92-93 0.0 94-95 0.0 96-97 8.08124840972576E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 38.0 20-21 199.0 22-23 469.0 24-25 587.0 26-27 1761.0 28-29 4833.0 30-31 15124.0 32-33 18874.0 34-35 25869.0 36-37 39635.0 38-39 43437.0 40-41 41097.0 42-43 45992.0 44-45 53758.0 46-47 53768.0 48-49 49797.0 50-51 43750.0 52-53 40697.0 54-55 44666.0 56-57 45904.0 58-59 48123.0 60-61 52445.0 62-63 53632.0 64-65 62850.0 66-67 71935.0 68-69 71474.0 70-71 95195.0 72-73 52974.0 74-75 47305.0 76-77 49650.0 78-79 51618.0 80-81 50951.0 82-83 46733.0 84-85 46226.0 86-87 47922.0 88-89 49756.0 90-91 49773.0 92-93 48457.0 94-95 56225.0 96-97 173760.0 98-99 1336151.0 100-101 2846184.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.17638437616839 #Duplication Level Percentage of deduplicated Percentage of total 1 91.35355766260976 80.55226414588742 2 6.426350540545513 11.333047107982773 3 1.311107463021598 3.4682614685356628 4 0.4420732363440585 1.5592167844116176 5 0.19666585317725543 0.8670641931712387 6 0.09427830202795597 0.4987871878769724 7 0.054625579635421403 0.337168027469274 8 0.035198889111355186 0.24829686207175872 9 0.02408516842652193 0.1911368762047577 >10 0.06056032857593112 0.799216097101593 >50 0.001085361666994493 0.06410404955709356 >100 3.847372846254452E-4 0.06600871321109754 >500 2.6877572991432287E-5 0.015428486518813771 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.6723543437898962E-5 2 1.6723543437898962E-5 0.0 0.0 1.6723543437898962E-5 1.6723543437898962E-5 3 1.6723543437898962E-5 0.0 0.0 1.6723543437898962E-5 1.6723543437898962E-5 4 1.6723543437898962E-5 0.0 0.0 1.6723543437898962E-5 1.6723543437898962E-5 5 1.6723543437898962E-5 0.0 0.0 1.6723543437898962E-5 1.6723543437898962E-5 6 1.6723543437898962E-5 0.0 0.0 1.6723543437898962E-5 1.6723543437898962E-5 7 1.6723543437898962E-5 0.0 0.0 1.6723543437898962E-5 1.6723543437898962E-5 8 1.6723543437898962E-5 0.0 0.0 1.6723543437898962E-5 1.6723543437898962E-5 9 8.36177171894948E-5 3.3447086875797924E-5 0.0 5.017063031369688E-5 3.3447086875797924E-5 10-11 1.0870303234634325E-4 3.3447086875797924E-5 0.0 1.0034126062739377E-4 3.3447086875797924E-5 12-13 1.1706480406529273E-4 3.3447086875797924E-5 0.0 1.337883475031917E-4 3.3447086875797924E-5 14-15 1.1706480406529273E-4 7.525594547054532E-5 0.0 1.5051189094109066E-4 5.017063031369688E-5 16-17 1.254265757842422E-4 1.0034126062739377E-4 0.0 1.9232074953583805E-4 6.689417375159585E-5 18-19 1.5051189094109063E-4 1.1706480406529273E-4 0.0 2.0068252125478753E-4 9.197948890844428E-5 20-21 1.7559720609793908E-4 1.337883475031917E-4 0.0 2.0068252125478753E-4 1.0034126062739377E-4 22-23 2.09044292973737E-4 1.337883475031917E-4 0.0 2.2576783641163598E-4 1.254265757842422E-4 24-25 2.4249137984953494E-4 1.672354343789896E-4 0.0 2.508531515684844E-4 1.337883475031917E-4 26-27 2.675766950063834E-4 2.0068252125478753E-4 0.0 3.0102378188218127E-4 1.337883475031917E-4 28-29 2.675766950063834E-4 2.0068252125478753E-4 0.0 8.779860304896955E-4 1.337883475031917E-4 30-31 2.675766950063834E-4 2.508531515684844E-4 0.0 0.0025837874611553896 1.337883475031917E-4 32-33 2.7593846672533285E-4 2.675766950063834E-4 0.0 0.0060288374093625755 1.337883475031917E-4 34-35 2.9266201016323187E-4 3.428326404769287E-4 0.0 0.0104605764204058 1.337883475031917E-4 36-37 3.010237818821813E-4 4.0972681422852457E-4 0.0 0.017735317815891848 1.337883475031917E-4 38-39 3.010237818821813E-4 4.264503576664235E-4 0.0 0.034007325580967536 1.4215011922214118E-4 40-41 3.010237818821813E-4 5.518769334506657E-4 0.0 0.051056978115905524 1.5051189094109066E-4 42-43 3.010237818821813E-4 5.686004768885647E-4 0.0 0.0612081689827102 1.5051189094109066E-4 44-45 3.1774732532008023E-4 6.4385642235911E-4 0.0 0.07399331794098396 1.5051189094109066E-4 46-47 3.5119441219587816E-4 7.441976829865038E-4 0.0 0.08697078764879354 1.5887366266004014E-4 48-49 3.846414990716761E-4 7.525594547054533E-4 0.0 0.09875252400079337 1.672354343789896E-4 50-51 4.0136504250957506E-4 8.445389436138975E-4 0.0 0.11151258764391027 1.672354343789896E-4 52-53 4.0136504250957506E-4 8.52900715332847E-4 0.0 0.1445248623903228 1.7559720609793908E-4 54-55 4.0136504250957506E-4 8.52900715332847E-4 0.0 0.18452757829377714 1.8395897781688856E-4 56-57 4.0136504250957506E-4 8.52900715332847E-4 0.0 0.24113677283106513 1.8395897781688856E-4 58-59 4.0136504250957506E-4 8.69624258770746E-4 0.0 0.2784469982410177 1.8395897781688856E-4 60-61 4.0972681422852457E-4 8.69624258770746E-4 0.0 0.29195962133884007 1.9232074953583805E-4 62-63 4.18088585947474E-4 8.69624258770746E-4 0.0 0.30165927653282143 2.0068252125478753E-4 64-65 4.264503576664235E-4 0.0010034126062739377 0.0 0.307362004845145 2.0068252125478753E-4 66-67 4.431739011043225E-4 0.0010117743779928872 0.0 0.3124125149633905 2.0068252125478753E-4 68-69 4.5153567282327196E-4 0.001078668551744483 0.0 0.31728742787553804 2.0068252125478753E-4 70-71 4.5153567282327196E-4 0.0011204774103392304 0.0 0.32168571979970545 2.174060646926865E-4 72-73 4.5153567282327196E-4 0.0011372009537771294 0.0 0.3259418616046508 2.508531515684844E-4 74-75 4.598974445422214E-4 0.0011706480406529272 0.0 0.3291109730861326 2.508531515684844E-4 76-77 4.682592162611709E-4 0.0011957333558097758 0.0 0.33208776381807864 2.5921492328743394E-4 78-79 4.849827596990699E-4 0.0012040951275287253 0.0 0.33427854800844337 2.675766950063834E-4 80-81 4.849827596990699E-4 0.0012040951275287253 0.0 0.3351481722672141 2.675766950063834E-4 82-83 4.849827596990699E-4 0.0012124568992476748 0.0 0.33573349628754057 2.8430023844428236E-4 84-85 4.849827596990699E-4 0.001220818670966624 0.0 0.3359592641239522 2.8430023844428236E-4 86-87 4.849827596990699E-4 0.0012626275295613714 0.0 0.33605124361286065 2.8430023844428236E-4 88 4.849827596990699E-4 0.0013713305619077148 0.0 0.33605960538457963 2.8430023844428236E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7850 0.0 51.396046 1 CTTATAC 10540 0.0 49.511547 1 TATACAC 13295 0.0 41.5552 3 TTATACA 13125 0.0 40.367886 2 GTATCAA 14295 0.0 36.18283 1 TACACAT 17550 0.0 31.40732 5 TCAACGC 16840 0.0 30.213694 4 ATCAACG 16965 0.0 29.843605 3 CAACGCA 17300 0.0 29.337526 5 ACACATC 18555 0.0 28.80121 6 TATCAAC 17890 0.0 28.536402 2 ACATCTC 18960 0.0 28.340984 8 ATACACA 20180 0.0 28.187813 4 AACGCAG 18075 0.0 28.126074 6 CACATCT 20070 0.0 26.459791 7 CATCTCC 21485 0.0 24.756231 9 ACGCAGA 20555 0.0 24.73261 7 CGCAGAG 21205 0.0 23.934885 8 TGGTATC 3420 0.0 21.850927 2 GTGGTAT 3800 0.0 21.43355 1 >>END_MODULE