##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139616_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6260350 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.225624286182082 32.0 25.0 33.0 18.0 33.0 2 29.579254674259428 31.0 28.0 33.0 25.0 33.0 3 32.00283945785779 33.0 31.0 33.0 29.0 34.0 4 31.893233445414396 33.0 31.0 33.0 29.0 34.0 5 32.86325636745549 33.0 33.0 34.0 32.0 34.0 6 36.842071928885765 38.0 37.0 38.0 35.0 38.0 7 37.01870917760189 38.0 38.0 38.0 35.0 38.0 8 37.13301764278355 38.0 38.0 38.0 36.0 38.0 9 37.21880981095306 38.0 38.0 38.0 36.0 38.0 10-11 37.33282020973268 38.0 38.0 38.0 36.5 38.0 12-13 37.38985288362472 38.0 38.0 38.0 37.0 38.0 14-15 37.395373341746065 38.0 38.0 38.0 37.0 38.0 16-17 37.44529874527782 38.0 38.0 38.0 37.0 38.0 18-19 37.43681335708067 38.0 38.0 38.0 37.0 38.0 20-21 37.451853194766606 38.0 38.0 38.0 37.0 38.0 22-23 37.46074097546297 38.0 38.0 38.0 37.0 38.0 24-25 37.474804727407744 38.0 38.0 38.0 37.0 38.0 26-27 37.43833041011917 38.0 38.0 38.0 37.0 38.0 28-29 37.408446530162436 38.0 38.0 38.0 37.0 38.0 30-31 37.424911311882255 38.0 38.0 38.0 37.0 38.0 32-33 37.4167783458481 38.0 38.0 38.0 37.0 38.0 34-35 37.38999139769633 38.0 38.0 38.0 37.0 38.0 36-37 37.37064657217529 38.0 38.0 38.0 37.0 38.0 38-39 37.37065580537358 38.0 38.0 38.0 37.0 38.0 40-41 37.37617344158254 38.0 38.0 38.0 37.0 38.0 42-43 37.34583582249428 38.0 38.0 38.0 37.0 38.0 44-45 37.315074715072754 38.0 38.0 38.0 37.0 38.0 46-47 37.29351516268031 38.0 38.0 38.0 37.0 38.0 48-49 37.24282770138424 38.0 38.0 38.0 37.0 38.0 50-51 37.20201999282252 38.0 38.0 38.0 37.0 38.0 52-53 37.19043134611982 38.0 38.0 38.0 37.0 38.0 54-55 37.17456025470449 38.0 38.0 38.0 37.0 38.0 56-57 37.1297522319053 38.0 38.0 38.0 36.0 38.0 58-59 37.112522925574645 38.0 38.0 38.0 36.0 38.0 60-61 37.13471995414683 38.0 38.0 38.0 36.0 38.0 62-63 37.14400106896494 38.0 38.0 38.0 36.0 38.0 64-65 37.1529168981409 38.0 38.0 38.0 36.0 38.0 66-67 37.154005798428244 38.0 38.0 38.0 36.0 38.0 68-69 37.144546605096295 38.0 38.0 38.0 36.0 38.0 70-71 37.14238131216574 38.0 38.0 38.0 36.0 38.0 72-73 37.14125646162546 38.0 38.0 38.0 36.0 38.0 74-75 37.11791894149045 38.0 38.0 38.0 36.0 38.0 76-77 37.09710570127278 38.0 38.0 38.0 36.0 38.0 78-79 37.09712965647981 38.0 38.0 38.0 36.0 38.0 80-81 37.08928523622936 38.0 38.0 38.0 36.0 38.0 82-83 37.0242769317593 38.0 38.0 38.0 36.0 38.0 84-85 37.03361729690103 38.0 38.0 38.0 36.0 38.0 86-87 37.03819573990447 38.0 38.0 38.0 36.0 38.0 88-89 37.02291044289579 38.0 38.0 38.0 36.0 38.0 90-91 37.010260392341976 38.0 38.0 38.0 36.0 38.0 92-93 37.000987864053954 38.0 38.0 38.0 36.0 38.0 94-95 36.949338317115966 38.0 38.0 38.0 35.5 38.0 96-97 36.868121747989946 38.0 38.0 38.0 35.0 38.0 98-99 36.86038280228031 38.0 38.0 38.0 35.0 38.0 100 35.54676391194075 38.0 36.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 0.0 20 11.0 21 70.0 22 308.0 23 881.0 24 2388.0 25 4711.0 26 8837.0 27 14421.0 28 23072.0 29 34436.0 30 46762.0 31 60731.0 32 78468.0 33 105126.0 34 158151.0 35 290599.0 36 890236.0 37 4541141.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.64847013345899 20.61827214133395 13.824370841885836 23.90888688332122 2 15.385648802283056 20.376164031031777 41.487228106552124 22.75095906013305 3 18.632477048714982 25.867976378039543 29.913482309487684 25.58606426375779 4 13.197792455693373 17.5526927408212 38.0647567628008 31.184758040684624 5 13.944594445004407 37.171214311283386 35.240762213340574 13.64342903037164 6 30.940056175970334 37.2203181686327 18.232974374505616 13.606651280891352 7 27.334318368781297 32.43801065435639 22.490899071138195 17.736771905724122 8 24.687629285902545 36.873018281725464 20.621770348303208 17.817582084068782 9 25.88847268922664 17.068135168161525 21.02157227631043 36.0218198663014 10-11 24.635835057145368 26.62283258923223 28.470876228964837 20.270456124657567 12-13 25.447946201090993 24.179630531839276 28.63585103069317 21.73657223637656 14-15 22.604343207648135 25.618495771003218 26.222104195452328 25.555056825896315 16-17 22.190644293050706 28.721852612074407 26.955218158729146 22.132284936145744 18-19 22.176978922903672 27.814107837421233 28.66870063175382 21.340212607921284 20-21 23.011319754101045 26.946509709206996 28.597294536439577 21.444876000252382 22-23 22.779476457922563 26.792358702887455 28.468429122972534 21.959735716217455 24-25 22.493284785482164 26.94924138124942 28.57102918909731 21.98644464417111 26-27 22.415360526610108 27.08381664509738 28.548962277716534 21.95186055057598 28-29 22.34229005805873 27.01519912980233 28.649720742851905 21.992790069287036 30-31 22.55127107007127 26.96841926236921 28.499861564130924 21.980448103428593 32-33 22.316721691352605 27.191688365836985 28.432492026933033 22.05909791587738 34-35 22.51944897806201 27.078453192959024 28.49549957355576 21.90659825542321 36-37 22.511371003343594 26.95176639172872 28.46711377208353 22.069748832844148 38-39 22.258570625474363 27.123109584427656 28.514840616780408 22.10347917331758 40-41 22.63277255410044 26.936501917464394 28.519183377110796 21.91154215132437 42-43 22.381857501672858 27.019899889922637 28.327054195308506 22.271188413096002 44-45 22.38136517731774 27.0990831304251 28.27556697612347 22.243984716133685 46-47 22.55246573017462 27.013095279621346 28.175826352555283 22.25861263764875 48-49 22.4480532529091 27.279273817826283 27.989608117623817 22.2830648116408 50-51 22.369265801490233 27.44537088249257 27.77543750392845 22.409925812088748 52-53 22.493233124311207 27.223624640735217 27.68445873789848 22.59868349705509 54-55 22.636080283530568 26.978770070968096 27.99030379593674 22.394845849564597 56-57 22.439971302868422 26.724353478380962 28.132923457407284 22.702751761343336 58-59 22.196834265420446 26.47594537227011 28.25004704239055 23.077173319918902 60-61 22.40110846695222 26.847351559932136 28.49188548484312 22.259654488272524 62-63 21.91597461591368 27.131044089344208 28.540291581577627 22.412689713164486 64-65 21.72919771333375 27.50949393154159 28.14297532397962 22.618333031145042 66-67 21.84307968444526 28.22870172027361 27.536069624419568 22.39214897086157 68-69 21.951248109579204 28.166990176211335 27.401862580806903 22.479899133402554 70-71 21.954956739977543 27.457941016544936 27.464771784495152 23.12233045898237 72-73 22.234766406280862 26.966098148719848 27.34949844397657 23.44963700102272 74-75 22.22445495119912 27.035329211424237 27.611487181267808 23.128728656108834 76-77 22.649469750986288 26.843883723136656 26.931175611931813 23.57547091394524 78-79 22.8510297793736 26.880785299229203 26.383458285786908 23.884726635610285 80-81 22.654598944210935 27.35394808307768 26.520124316583416 23.47132865612797 82-83 22.689047195099203 27.03470209452324 26.611815958827744 23.664434751549816 84-85 22.68532185874936 27.503558211245107 26.55310454357254 23.25801538643299 86-87 23.256810261427038 27.36143028530318 26.647498171890515 22.734261281379265 88-89 22.96715743592392 27.566503508103153 26.975960455864843 22.490378600108084 90-91 22.9427748977681 27.099470687080096 26.804013300363593 23.15374111478821 92-93 22.929276512091807 26.638368472871086 27.05012206065598 23.382232954381127 94-95 22.13845718815218 27.098857006948478 27.748877884945543 23.0138079199538 96-97 22.309327838101588 26.92708254214533 27.933133198781174 22.83045642097191 98-99 23.564042026638845 28.799496377067097 28.190403390951356 19.446058205342695 100 30.464682912864134 40.05943203492811 29.475885052207758 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1032.0 1 929.5 2 1072.5 3 1446.0 4 1883.0 5 2669.5 6 3330.5 7 4169.0 8 5258.5 9 6077.0 10 6388.0 11 6491.0 12 7357.5 13 9429.5 14 13280.0 15 17425.5 16 20282.5 17 21800.5 18 21645.5 19 20234.5 20 18299.5 21 16595.0 22 16245.0 23 18092.0 24 22306.0 25 28886.0 26 38407.5 27 49555.5 28 60725.5 29 73801.0 30 86759.0 31 99238.0 32 115192.5 33 132805.0 34 148630.5 35 164581.0 36 183386.5 37 198878.5 38 210208.0 39 219930.0 40 230740.5 41 239829.5 42 244790.5 43 252114.5 44 260450.5 45 267915.5 46 270751.0 47 270612.5 48 271269.0 49 270378.5 50 266515.0 51 260456.5 52 251450.0 53 239001.0 54 224243.5 55 207385.0 56 188155.0 57 168650.0 58 149257.5 59 127920.0 60 107129.5 61 86542.0 62 67992.0 63 52528.0 64 39094.5 65 28839.5 66 21222.5 67 16180.0 68 12491.0 69 9446.5 70 6965.0 71 4892.0 72 3497.5 73 2355.5 74 1482.0 75 999.0 76 672.0 77 440.0 78 293.0 79 179.5 80 100.5 81 63.5 82 43.5 83 31.5 84 26.0 85 21.0 86 18.5 87 19.0 88 15.5 89 7.5 90 3.5 91 1.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0050316675585230855 3 0.003881572116574952 4 0.0 5 4.792064341450558E-5 6 3.5141805170637425E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 3.11517247951195E-4 26-27 0.0021648702903186924 28-29 0.007767306209505825 30-31 0.002919827613377706 32-33 0.006117488818144457 34-35 0.0032975551282853504 36-37 0.0013896443059970907 38-39 4.8714703152896783E-5 40-41 8.978031491506497E-5 42-43 0.0025805136701478946 44-45 7.374409456876401E-4 46-47 4.8516600749614946E-4 48-49 0.0020685395815048923 50-51 4.4288043301441966E-4 52-53 0.0 54-55 0.005468513155704634 56-57 0.05039217233609954 58-59 0.07504025329592841 60-61 0.0352519575949619 62-63 0.014890628205440251 64-65 0.0016753845139034107 66-67 0.0 68-69 0.0023538804121349247 70-71 0.0037183327647269727 72-73 0.013879382497312354 74-75 0.016933448500480352 76-77 0.02274836853438949 78-79 0.006523997894596518 80-81 0.00845574139120683 82-83 0.03566642439325158 84-85 0.020283995411512896 86-87 0.01481951484096673 88-89 0.006915128390552123 90-91 6.039393757602087E-5 92-93 0.0 94-95 0.0 96-97 8.381129342511927E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 29.0 20-21 141.0 22-23 405.0 24-25 522.0 26-27 1448.0 28-29 4264.0 30-31 13379.0 32-33 17835.0 34-35 24889.0 36-37 38334.0 38-39 22677.0 40-41 41422.0 42-43 46910.0 44-45 56356.0 46-47 56179.0 48-49 52677.0 50-51 26615.0 52-53 3653.0 54-55 3668.0 56-57 3282.0 58-59 28256.0 60-61 52827.0 62-63 51073.0 64-65 54354.0 66-67 57779.0 68-69 59288.0 70-71 60045.0 72-73 53627.0 74-75 53646.0 76-77 56660.0 78-79 58576.0 80-81 57668.0 82-83 54007.0 84-85 53166.0 86-87 55358.0 88-89 57282.0 90-91 58036.0 92-93 56778.0 94-95 65906.0 96-97 214931.0 98-99 1533503.0 100-101 3052899.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.88523287897098 #Duplication Level Percentage of deduplicated Percentage of total 1 90.58846499829272 78.70799877525175 2 6.844642924969261 11.893967890187104 3 1.5303993841088852 3.9890732065840275 4 0.5035672111724464 1.7501021765172788 5 0.2167691111861036 0.9417017353186082 6 0.107251122192465 0.5591123236933977 7 0.06376472440607937 0.38781490506399274 8 0.04016837976078242 0.279203122390922 9 0.02357192010073759 0.18432465906213744 >10 0.07861491830351587 1.0457722357154773 >50 0.001966292006066737 0.11920199769345505 >100 7.9170896072247E-4 0.11899975089562807 >500 2.7304540256699615E-5 0.022727221626246075 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.1947095609670386E-5 0.0 0.0 0.0 3 0.0 3.1947095609670386E-5 0.0 0.0 0.0 4 0.0 3.1947095609670386E-5 0.0 0.0 1.5973547804835193E-5 5 0.0 3.1947095609670386E-5 0.0 0.0 1.5973547804835193E-5 6 1.1181483463384635E-4 4.7920643414505575E-5 0.0 0.0 4.7920643414505575E-5 7 1.1181483463384635E-4 4.7920643414505575E-5 0.0 0.0 7.986773902417596E-5 8 1.1181483463384635E-4 6.389419121934077E-5 0.0 0.0 7.986773902417596E-5 9 1.2778838243868154E-4 1.5973547804835192E-4 0.0 0.0 7.986773902417596E-5 10-11 1.3577515634109914E-4 1.5973547804835192E-4 0.0 0.0 7.986773902417596E-5 12-13 1.5973547804835192E-4 1.7570902585318713E-4 0.0 0.0 7.986773902417596E-5 14-15 1.916825736580223E-4 2.3960321707252788E-4 0.0 7.986773902417596E-6 7.986773902417596E-5 16-17 2.635635387797807E-4 2.555767648773631E-4 0.0 1.5973547804835193E-5 7.986773902417596E-5 18-19 2.8752386048703344E-4 2.635635387797807E-4 0.0 4.7920643414505575E-5 8.785451292659356E-5 20-21 3.1148418219428624E-4 2.875238604870335E-4 0.0 6.389419121934077E-5 9.584128682901115E-5 22-23 3.1947095609670384E-4 3.2745772999912145E-4 0.0 1.1980160853626394E-4 1.1181483463384634E-4 24-25 3.3544450390153905E-4 3.3544450390153905E-4 0.0 1.5973547804835192E-4 1.3577515634109914E-4 26-27 3.5141805170637425E-4 3.3544450390153905E-4 0.0 2.3161644317011028E-4 1.4376193024351675E-4 28-29 3.5141805170637425E-4 3.3544450390153905E-4 0.0 6.309551382909901E-4 1.4376193024351675E-4 30-31 3.5141805170637425E-4 3.833651473160446E-4 0.0 0.0020126670234092343 1.4376193024351675E-4 32-33 3.5940482560879185E-4 3.833651473160446E-4 0.0 0.0050716014280351735 1.4376193024351675E-4 34-35 3.6739159951120945E-4 4.232990168281326E-4 0.0 0.009216737083389905 1.5973547804835192E-4 36-37 3.833651473160446E-4 4.632328863402206E-4 0.0 0.0194717547740941 1.7570902585318713E-4 38-39 4.073254690232974E-4 5.031667558523086E-4 0.0 0.193990751315821 1.916825736580223E-4 40-41 4.232990168281326E-4 5.590741731692318E-4 0.0 0.37253508190436635 1.996693475604399E-4 42-43 4.312857907305502E-4 6.069948165837373E-4 0.0 0.39431501433625915 2.076561214628575E-4 44-45 4.312857907305502E-4 6.788757817054957E-4 0.0 0.425104027730079 2.076561214628575E-4 46-47 4.632328863402206E-4 7.347831990224189E-4 0.0 0.45975863969266895 2.076561214628575E-4 48-49 4.7920643414505577E-4 7.427699729248365E-4 0.0 0.4927040820401415 2.076561214628575E-4 50-51 5.031667558523086E-4 9.344525465828587E-4 0.0 0.5256335508398093 2.236296692676927E-4 52-53 5.111535297547262E-4 9.584128682901115E-4 0.0 1.0714097454615157 2.236296692676927E-4 54-55 5.191403036571438E-4 9.823731899973643E-4 0.0 1.80713538380442 2.236296692676927E-4 56-57 5.271270775595614E-4 0.0010063335117046171 0.0 2.6152771011205447 2.236296692676927E-4 58-59 5.35113851461979E-4 0.0010223070595094523 0.0 3.4455901027897804 2.236296692676927E-4 60-61 5.590741731692318E-4 0.0010542541551191228 0.0 3.6620955697365165 2.236296692676927E-4 62-63 5.830344948764846E-4 0.0010862012507287932 0.0 3.6688443936840596 2.236296692676927E-4 64-65 6.069948165837373E-4 0.0011341218941432988 0.0 3.6747066857284336 2.236296692676927E-4 66-67 6.389419121934077E-4 0.0011580822158505516 0.0 3.6807446867986613 2.236296692676927E-4 68-69 6.549154599982429E-4 0.0011820425375578044 0.0 3.6866069788430362 2.236296692676927E-4 70-71 6.708890078030781E-4 0.0011980160853626394 0.0 3.691734487688388 2.236296692676927E-4 72-73 7.188096512175837E-4 0.0011980160853626394 0.0 3.695584112709353 2.475899909749455E-4 74-75 7.188096512175837E-4 0.001206002859265057 0.0 3.699018425487393 2.635635387797807E-4 76-77 7.267964251200013E-4 0.0012619102765819802 0.0 3.7025805266478713 2.715503126821983E-4 78-79 7.347831990224189E-4 0.0012938573721916506 0.0 3.7049206514012796 2.715503126821983E-4 80-81 7.347831990224189E-4 0.0012938573721916506 0.0 3.7058551039478624 2.9551063438945104E-4 82-83 7.347831990224189E-4 0.0012938573721916506 0.0 3.7064700855383483 3.1947095609670384E-4 84-85 7.347831990224189E-4 0.0012938573721916506 0.0 3.7067735829466404 3.3544450390153905E-4 86-87 7.507567468272541E-4 0.0012938573721916506 0.0 3.7068694242334694 3.3544450390153905E-4 88 7.507567468272541E-4 0.0013098309199964858 0.0 3.7068694242334694 3.3544450390153905E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCTCGT 6975 0.0 59.163036 94 GGTATCA 8390 0.0 51.49564 1 TATCTCG 8525 0.0 44.15633 94 GTATCAA 14925 0.0 36.573425 1 TCAACGC 17515 0.0 30.453379 4 ATCAACG 17990 0.0 29.697046 3 CAACGCA 18075 0.0 29.50987 5 TATCAAC 18455 0.0 29.32182 2 AACGCAG 18705 0.0 28.607794 6 CCGTCTT 4340 0.0 28.195606 90-91 TATGCCG 4285 0.0 27.503984 86-87 GCCGTCT 4635 0.0 26.705223 90-91 TCTCGTA 4355 0.0 26.322475 82-83 ATGCCGT 4680 0.0 26.300238 88-89 CTATCTC 10645 0.0 26.277733 92-93 TGCCGTC 4605 0.0 26.186783 88-89 TGGTATC 3980 0.0 24.818708 2 CTCGTAT 4630 0.0 24.816895 82-83 ACGCAGA 21690 0.0 24.611359 7 TCGTATG 4870 0.0 24.539139 84-85 >>END_MODULE