##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139615_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6641461 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 21.493100238034973 18.0 18.0 25.0 18.0 33.0 2 29.353326323831457 30.0 27.0 32.0 27.0 33.0 3 30.453951321855236 31.0 29.0 33.0 27.0 33.0 4 32.01339810622994 33.0 33.0 33.0 29.0 33.0 5 32.40725286198323 33.0 33.0 33.0 32.0 34.0 6 36.00657355362021 38.0 36.0 38.0 33.0 38.0 7 36.156455334150124 38.0 36.0 38.0 33.0 38.0 8 35.70756434465248 38.0 36.0 38.0 31.0 38.0 9 36.73957853550597 38.0 37.0 38.0 34.0 38.0 10-11 36.91859863364401 38.0 38.0 38.0 35.0 38.0 12-13 37.06776174700115 38.0 38.0 38.0 36.0 38.0 14-15 36.94397460137159 38.0 38.0 38.0 35.5 38.0 16-17 37.049019033613234 38.0 38.0 38.0 35.5 38.0 18-19 37.21044307871416 38.0 38.0 38.0 36.0 38.0 20-21 37.28467367274948 38.0 38.0 38.0 36.5 38.0 22-23 37.34860269119224 38.0 38.0 38.0 37.0 38.0 24-25 37.37752125465475 38.0 38.0 38.0 37.0 38.0 26-27 37.361979387146405 38.0 38.0 38.0 37.0 38.0 28-29 37.33674323136738 38.0 38.0 38.0 37.0 38.0 30-31 37.34857874678538 38.0 38.0 38.0 37.0 38.0 32-33 37.33789208564893 38.0 38.0 38.0 37.0 38.0 34-35 37.313402726519726 38.0 38.0 38.0 37.0 38.0 36-37 37.29423366629608 38.0 38.0 38.0 37.0 38.0 38-39 37.27961073275647 38.0 38.0 38.0 37.0 38.0 40-41 37.27008223372661 38.0 38.0 38.0 37.0 38.0 42-43 37.24113963461221 38.0 38.0 38.0 37.0 38.0 44-45 37.204471116682264 38.0 38.0 38.0 36.5 38.0 46-47 37.16918935526731 38.0 38.0 38.0 36.0 38.0 48-49 37.113341102481066 38.0 38.0 38.0 36.0 38.0 50-51 37.0530017360734 38.0 38.0 38.0 36.0 38.0 52-53 37.020330779301005 38.0 38.0 38.0 36.0 38.0 54-55 36.983886797129436 38.0 38.0 38.0 36.0 38.0 56-57 36.915189918844035 38.0 38.0 38.0 36.0 38.0 58-59 36.880277041940296 38.0 38.0 38.0 35.5 38.0 60-61 36.89726507768253 38.0 38.0 38.0 35.5 38.0 62-63 36.89821503948273 38.0 38.0 38.0 35.0 38.0 64-65 36.898461013750115 38.0 38.0 38.0 35.0 38.0 66-67 36.88771823771826 38.0 38.0 38.0 35.0 38.0 68-69 36.869338425245104 38.0 38.0 38.0 35.0 38.0 70-71 36.854703580815226 38.0 38.0 38.0 35.0 38.0 72-73 36.84297742313857 38.0 38.0 38.0 35.0 38.0 74-75 36.80973533655418 38.0 38.0 38.0 35.0 38.0 76-77 36.777747639164424 38.0 38.0 38.0 35.0 38.0 78-79 36.774279985920074 38.0 38.0 38.0 35.0 38.0 80-81 36.76779932630441 38.0 38.0 38.0 35.0 38.0 82-83 36.70062794456794 38.0 38.0 38.0 34.0 38.0 84-85 36.67119345428017 38.0 38.0 38.0 34.0 38.0 86-87 36.66466913556809 38.0 38.0 38.0 34.0 38.0 88-89 36.642272394386744 38.0 38.0 38.0 34.0 38.0 90-91 36.60643691814438 38.0 38.0 38.0 34.0 38.0 92-93 36.58529173611991 38.0 38.0 38.0 34.0 38.0 94-95 36.55782040761482 38.0 38.0 38.0 34.0 38.0 96-97 36.51143313214321 38.0 38.0 38.0 34.0 38.0 98-99 36.49064786165994 38.0 37.5 38.0 34.0 38.0 100 34.92753501969044 38.0 34.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 8.0 20 34.0 21 130.0 22 444.0 23 1284.0 24 3101.0 25 6319.0 26 11068.0 27 18875.0 28 30157.0 29 44477.0 30 61377.0 31 81465.0 32 108971.0 33 155683.0 34 248209.0 35 481232.0 36 1535112.0 37 3853512.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.55822371011439 16.799074781889107 19.955488709487266 23.687212798509243 2 14.862732414411598 20.941290977528066 41.032367041083454 23.163609566976877 3 18.53903332402789 24.942894992737838 31.068737715082978 25.449333968151294 4 12.883400203660008 17.16144986773242 38.127137989668235 31.828011938939337 5 13.691871018100088 36.8482286798729 35.47901146419785 13.98088883782916 6 30.992569393731788 37.028540454268274 18.24577464258558 13.73311550941436 7 26.99738807470224 32.24849170988131 22.841736178229457 17.912384037187 8 24.553302353202106 36.685949070543366 20.877063043809187 17.883685532445345 9 25.659293941498717 16.531362602294884 21.224441429378267 36.58490202682813 10-11 24.56138039506669 26.36757936243245 28.682815422690883 20.388224819809977 12-13 25.19392946822996 24.033785638431063 28.915482602397276 21.856802290941708 14-15 22.29474809834764 25.37596019911884 26.629291356224183 25.70000034630934 16-17 21.92324098568071 28.448130614634344 27.33511496943218 22.29351343025277 18-19 21.943560309998055 27.61394669034419 29.103001583537115 21.33949141612064 20-21 22.70140559133257 26.744894519856864 29.06473266767233 21.488967221138232 22-23 22.49345322786622 26.600734912910728 28.940896323914604 21.96491553530845 24-25 22.23271581039138 26.68922800672172 29.054976212107313 22.023079970779584 26-27 22.10430116215245 26.85657518996889 29.01023998730064 22.028883660578018 28-29 22.04809636540599 26.85153257130743 29.09875837355954 22.00161268972704 30-31 22.316545535168057 26.765504257333646 28.957381106804924 21.960569100693377 32-33 22.06440463644668 26.965364259511208 28.908745001632415 22.061486102409695 34-35 22.24430709097224 26.908403822242267 28.924697980254688 21.92259110653081 36-37 22.22084539895385 26.812556079510475 28.912473211007413 22.054125310528264 38-39 22.064012705866105 26.99134911592185 29.014029393824302 21.930608784387744 40-41 22.2740263390357 26.825704867379425 28.89061577864632 22.00965301493855 42-43 22.192718492699655 26.92643769060366 28.70605121371428 22.174792602982407 44-45 22.22487303197002 27.01292626944086 28.59865479124834 22.163545907340776 46-47 22.262002718797863 27.02378365428028 28.383174657512257 22.3310389694096 48-49 22.260535469184116 27.07294771246382 28.365573534418242 22.30094328393382 50-51 22.22262608991775 27.283750657900473 28.233065908300066 22.26055734388171 52-53 22.414674781322827 27.15098374191615 28.125784770525364 22.308556706235656 54-55 22.391098290123658 27.085096677430816 28.152612983515418 22.371192048930116 56-57 22.29226204867652 27.175991049877616 28.17848990456577 22.3532569968801 58-59 22.290699000443777 27.128057501988977 28.226878762047164 22.35436473552008 60-61 22.268990042014273 27.114276205985927 28.285631253793454 22.33110249820635 62-63 22.26123500478085 27.175015819155668 28.32380779736502 22.239941378698457 64-65 22.171767503350154 27.07095801325635 28.372153334675826 22.38512114871767 66-67 22.234025541650958 27.16530305085263 28.204612787336636 22.396058620159774 68-69 22.213201687655765 27.117820924670994 28.332167312906293 22.33681007476695 70-71 22.144034090808468 26.84211076254134 28.335018133144995 22.6788370135052 72-73 22.3377892132041 26.916076058308747 28.30792271067318 22.438212017813978 74-75 22.201488441328735 27.184802586327855 28.20560449938505 22.408104472958364 76-77 22.393988179330453 27.094050259342197 28.002402873443767 22.50955868788359 78-79 22.331619855310606 27.133519082358852 27.938695994605585 22.596165067724957 80-81 22.352216559193934 27.183922742407923 27.894764388283328 22.569096310114816 82-83 22.447002543968463 27.188337446227013 27.927205367052643 22.437454642751877 84-85 22.471517677542305 27.219060750149993 27.852288280243286 22.457133292064412 86-87 22.425103040576015 27.25192763375527 27.918298114356976 22.40467121131174 88-89 22.493718919683406 27.259956756634608 27.83674275652201 22.40958156715998 90-91 22.52644811993796 27.284419217557847 27.846278538178264 22.34285412432592 92-93 22.51859281569094 27.32600915973776 27.824902336485042 22.33049568808626 94-95 22.41664663924365 27.37059500573772 27.8038030537034 22.408955301315228 96-97 22.590564531632705 27.4402122029419 27.855680157622864 22.11354310780253 98-99 23.580911498720294 29.38062703552365 28.080949805956333 18.95751165979972 100 30.052151176865493 40.400165515203945 29.547683307930555 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1767.0 1 1636.0 2 1917.0 3 2455.0 4 2892.5 5 3678.5 6 4672.5 7 6983.0 8 9056.0 9 9471.5 10 9222.5 11 8823.0 12 9405.0 13 11389.0 14 15822.0 15 21053.0 16 24289.5 17 25386.5 18 24931.0 19 23381.0 20 21557.0 21 20497.0 22 21280.5 23 24802.0 24 30942.0 25 39785.0 26 51231.0 27 63989.5 28 76306.0 29 90410.5 30 104038.0 31 116527.0 32 132180.0 33 149446.5 34 165372.0 35 180300.0 36 197196.0 37 211631.5 38 223629.5 39 234588.5 40 244448.5 41 254360.5 42 260865.0 43 266786.0 44 273907.5 45 279457.0 46 283045.0 47 285505.5 48 286348.0 49 284746.0 50 281153.5 51 275120.0 52 264533.5 53 250967.0 54 235462.0 55 218545.0 56 201171.0 57 182842.5 58 163393.0 59 141695.0 60 119308.5 61 97500.5 62 77811.5 63 60798.0 64 45910.5 65 34461.5 66 25794.0 67 19689.0 68 15080.0 69 11271.0 70 8451.0 71 6109.5 72 4312.0 73 2897.0 74 1951.0 75 1316.5 76 860.5 77 550.0 78 371.5 79 241.5 80 153.0 81 103.0 82 66.5 83 42.0 84 30.0 85 22.0 86 15.0 87 10.0 88 7.0 89 3.5 90 2.0 91 2.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0029963286692491304 3 0.002815645533415012 4 0.0 5 3.011385597235307E-5 6 1.656262078479419E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 1.6564833100271152E-4 26-27 0.001506068212389655 28-29 0.0058459033438642465 30-31 0.0021043167909395206 32-33 0.004914388331034408 34-35 0.0023285278182467993 36-37 0.0010668996369035707 38-39 2.3017868080454816E-5 40-41 7.727722656361388E-5 42-43 0.0020003740777360932 44-45 4.474693371636708E-4 46-47 3.32971161129898E-4 48-49 0.0019371041493651381 50-51 6.219523828409315E-4 52-53 0.0 54-55 0.004645941880580414 56-57 0.04593217519896008 58-59 0.06949488630258965 60-61 0.031758959783593804 62-63 0.01388743873507898 64-65 0.0015886414710991768 66-67 0.0 68-69 0.002251675658474948 70-71 0.0035772675626128078 72-73 0.012675374359623001 74-75 0.015745115220278046 76-77 0.021300379984542164 78-79 0.0064021839011643026 80-81 0.008293117775705587 82-83 0.033397062209172754 84-85 0.019356548674953226 86-87 0.013734930104038725 88-89 0.006817797099631195 90-91 2.9565828761224296E-5 92-93 0.0 94-95 1.0093618309823614E-5 96-97 3.0792121158374965E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 58.0 20-21 232.0 22-23 485.0 24-25 628.0 26-27 1887.0 28-29 5320.0 30-31 15278.0 32-33 19519.0 34-35 27102.0 36-37 42604.0 38-39 46752.0 40-41 45612.0 42-43 51789.0 44-45 61613.0 46-47 61482.0 48-49 57601.0 50-51 51339.0 52-53 48021.0 54-55 52363.0 56-57 53051.0 58-59 55812.0 60-61 54084.0 62-63 52769.0 64-65 55762.0 66-67 58371.0 68-69 60130.0 70-71 58559.0 72-73 54568.0 74-75 55522.0 76-77 58012.0 78-79 60197.0 80-81 59549.0 82-83 55453.0 84-85 54829.0 86-87 56744.0 88-89 59673.0 90-91 60146.0 92-93 59214.0 94-95 68167.0 96-97 205283.0 98-99 1527592.0 100-101 3168289.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.59987680022093 #Duplication Level Percentage of deduplicated Percentage of total 1 91.23573199548972 79.92238882582873 2 6.362734194930936 11.147494631770055 3 1.3753922964098477 3.614525871524268 4 0.5023221969782395 1.7601345027724036 5 0.2062406380581801 0.9033327242547767 6 0.10665721056362955 0.5605895103137502 7 0.06594534457083064 0.40437628419670163 8 0.04118682068280575 0.2886368334085259 9 0.022288920535514196 0.1757256023628862 >10 0.07974298735418854 1.0537475949745227 >50 0.0014981117032447124 0.08910814886634469 >100 1.8376170712073724E-4 0.03186588057848548 >500 7.552101573840137E-5 0.048073589148551955 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.011385597235307E-5 0.0 3.011385597235307E-5 0.0 3 0.0 3.011385597235307E-5 0.0 3.011385597235307E-5 0.0 4 0.0 7.528463993088268E-5 0.0 3.011385597235307E-5 0.0 5 0.0 9.034156791705921E-5 0.0 4.5170783958529607E-5 0.0 6 0.0 9.034156791705921E-5 0.0 4.5170783958529607E-5 3.011385597235307E-5 7 0.0 9.034156791705921E-5 0.0 4.5170783958529607E-5 6.022771194470614E-5 8 0.0 1.2045542388941228E-4 0.0 4.5170783958529607E-5 6.022771194470614E-5 9 0.0 2.2585391979264803E-4 0.0 4.5170783958529607E-5 1.0539849590323575E-4 10-11 1.5056927986176536E-5 2.2585391979264803E-4 0.0 4.5170783958529607E-5 1.0539849590323575E-4 12-13 1.5056927986176536E-5 2.2585391979264803E-4 0.0 6.775617593779441E-5 1.0539849590323575E-4 14-15 1.5056927986176536E-5 3.8395166364750164E-4 0.0 7.528463993088268E-5 1.2798388788250057E-4 16-17 1.5056927986176536E-5 3.914801276405899E-4 0.0 7.528463993088268E-5 1.5056927986176536E-4 18-19 1.5056927986176536E-5 4.0653705562676643E-4 0.0 7.528463993088268E-5 1.5056927986176536E-4 20-21 1.5056927986176536E-5 4.291224476060313E-4 0.0 9.034156791705921E-5 1.5056927986176536E-4 22-23 1.5056927986176536E-5 4.5170783958529607E-4 0.0 1.0539849590323575E-4 1.5056927986176536E-4 24-25 1.5056927986176536E-5 5.119355515300023E-4 0.0 1.3551235187558882E-4 1.5056927986176536E-4 26-27 1.5056927986176536E-5 5.571063354885318E-4 0.0 1.9574006382029496E-4 1.5056927986176536E-4 28-29 1.5056927986176536E-5 5.571063354885318E-4 0.0 6.926186873641206E-4 1.656262078479419E-4 30-31 1.5056927986176536E-5 5.872201914608849E-4 0.0 0.0022284253419541274 1.7315467184103014E-4 32-33 1.5056927986176536E-5 5.872201914608849E-4 0.0 0.005864673450615761 1.9574006382029496E-4 34-35 2.2585391979264803E-5 7.001471513572089E-4 0.0 0.01081840275806784 2.2585391979264803E-4 36-37 3.011385597235307E-5 8.13074111253533E-4 0.0 0.019031956974527142 2.2585391979264803E-4 38-39 3.011385597235307E-5 8.13074111253533E-4 0.0 0.03775524692533767 2.2585391979264803E-4 40-41 3.011385597235307E-5 8.733018231982391E-4 0.0 0.0580745712426829 2.2585391979264803E-4 42-43 3.011385597235307E-5 9.109441431636805E-4 0.0 0.0710310577747878 2.333823837857363E-4 44-45 3.764231996544134E-5 0.0010765703510116223 0.0 0.08541795246557948 2.4091084777882457E-4 46-47 4.5170783958529607E-5 0.0012196111668802993 0.0 0.10075343361950029 2.4091084777882457E-4 48-49 4.5170783958529607E-5 0.0012271396308733877 0.0 0.11545652379800167 2.5596777576500113E-4 50-51 4.5170783958529607E-5 0.0015282781905969183 0.0 0.1308597611278603 2.5596777576500113E-4 52-53 4.5170783958529607E-5 0.0015358066545900066 0.0 0.17097894574702766 2.6349623975808936E-4 54-55 4.5170783958529607E-5 0.001550863582576183 0.0 0.2218337200203389 2.7102470375117764E-4 56-57 4.5170783958529607E-5 0.0015659205105623597 0.0 0.293060517858947 2.7102470375117764E-4 58-59 4.5170783958529607E-5 0.0015885059025416244 0.0 0.33921753060057114 2.7102470375117764E-4 60-61 4.5170783958529607E-5 0.001603562830527801 0.0 0.35751922656776874 2.7102470375117764E-4 62-63 4.5170783958529607E-5 0.0016110912945208893 0.0 0.37161251116283 2.860816317373542E-4 64-65 4.5170783958529607E-5 0.0017466036463964782 0.0 0.3784558849325472 2.860816317373542E-4 66-67 4.5170783958529607E-5 0.0017616605743826547 0.0 0.3851938602063612 2.860816317373542E-4 68-69 4.5170783958529607E-5 0.0017917744303550076 0.0 0.39159305460048627 2.860816317373542E-4 70-71 4.5170783958529607E-5 0.0018143598223342725 0.0 0.396855450931655 2.860816317373542E-4 72-73 4.5170783958529607E-5 0.0018218882863273607 0.0 0.40156826939132817 3.764231996544134E-4 74-75 4.5170783958529607E-5 0.0018444736783066256 0.0 0.4054981275957203 3.764231996544134E-4 76-77 4.5170783958529607E-5 0.0018745875342789787 0.0 0.40907414799243724 3.764231996544134E-4 78-79 4.5170783958529607E-5 0.001882115998272067 0.0 0.41137032951032915 3.764231996544134E-4 80-81 4.5170783958529607E-5 0.0018971729262582436 0.0 0.4121532897656103 3.8395166364750164E-4 82-83 4.5170783958529607E-5 0.00191222985424442 0.0 0.41271792456509193 3.914801276405899E-4 84-85 4.5170783958529607E-5 0.0019197583182375083 0.0 0.4129061361649191 3.914801276405899E-4 86-87 4.5170783958529607E-5 0.001979986030182215 0.0 0.4130567054447809 3.914801276405899E-4 88 4.5170783958529607E-5 0.0021531407020232447 0.0 0.4130717623727671 4.065370556267665E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8020 0.0 48.608482 1 GTATCAA 14550 0.0 34.746887 1 TCAACGC 18200 0.0 29.402225 4 ATCAACG 18345 0.0 29.12422 3 CAACGCA 18795 0.0 28.426483 5 TATCAAC 19350 0.0 27.830051 2 AACGCAG 19410 0.0 27.56932 6 ACGCAGA 22200 0.0 24.104527 7 TGGTATC 3895 0.0 23.205507 2 CGCAGAG 23170 0.0 23.131859 8 GTGGTAT 4085 0.0 22.643147 1 GCAGAGT 26940 0.0 20.035872 9 TACATGG 19880 0.0 19.588417 2 ACATGGG 19790 0.0 19.250511 3 GAGTACT 16135 0.0 19.16095 12-13 GTACATG 19760 0.0 19.087511 1 AGAGTAC 24295 0.0 18.279627 10-11 CAGAGTA 26245 0.0 18.007708 10-11 CATGGGG 13885 0.0 17.368614 4 GTACTTT 17780 0.0 17.257603 14-15 >>END_MODULE