##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139614_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5801198 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 21.464952928688177 18.0 18.0 25.0 18.0 33.0 2 29.332872451517773 30.0 27.0 32.0 27.0 33.0 3 30.486882881777177 31.0 29.0 33.0 27.0 33.0 4 32.03328502147315 33.0 33.0 33.0 30.0 33.0 5 32.430446090617835 33.0 33.0 33.0 32.0 34.0 6 36.02081656237212 38.0 36.0 38.0 33.0 38.0 7 36.157985126520416 38.0 36.0 38.0 33.0 38.0 8 35.72182762939655 38.0 36.0 38.0 31.0 38.0 9 36.738932199866305 38.0 37.0 38.0 34.0 38.0 10-11 36.91610706960873 38.0 38.0 38.0 35.0 38.0 12-13 37.06787442869559 38.0 38.0 38.0 36.0 38.0 14-15 36.9470713635356 38.0 38.0 38.0 35.5 38.0 16-17 37.053624785777004 38.0 38.0 38.0 35.5 38.0 18-19 37.21219298151864 38.0 38.0 38.0 36.0 38.0 20-21 37.2865515810105 38.0 38.0 38.0 36.5 38.0 22-23 37.34795692064175 38.0 38.0 38.0 37.0 38.0 24-25 37.375600975336965 38.0 38.0 38.0 37.0 38.0 26-27 37.36084264696797 38.0 38.0 38.0 37.0 38.0 28-29 37.3370814073111 38.0 38.0 38.0 37.0 38.0 30-31 37.34733974225839 38.0 38.0 38.0 37.0 38.0 32-33 37.337802100404176 38.0 38.0 38.0 37.0 38.0 34-35 37.31433055791303 38.0 38.0 38.0 37.0 38.0 36-37 37.29247905215786 38.0 38.0 38.0 37.0 38.0 38-39 37.273675849736485 38.0 38.0 38.0 37.0 38.0 40-41 37.26545096309495 38.0 38.0 38.0 37.0 38.0 42-43 37.2373200953326 38.0 38.0 38.0 37.0 38.0 44-45 37.19984918585855 38.0 38.0 38.0 36.0 38.0 46-47 37.16483377237982 38.0 38.0 38.0 36.0 38.0 48-49 37.11012861207737 38.0 38.0 38.0 36.0 38.0 50-51 37.04539425684284 38.0 38.0 38.0 36.0 38.0 52-53 37.01694740925923 38.0 38.0 38.0 36.0 38.0 54-55 36.98092856628667 38.0 38.0 38.0 36.0 38.0 56-57 36.91641396736941 38.0 38.0 38.0 36.0 38.0 58-59 36.87836604103642 38.0 38.0 38.0 35.5 38.0 60-61 36.89682404683491 38.0 38.0 38.0 35.5 38.0 62-63 36.89879859827276 38.0 38.0 38.0 35.0 38.0 64-65 36.89880390384116 38.0 38.0 38.0 35.0 38.0 66-67 36.89092947105599 38.0 38.0 38.0 35.0 38.0 68-69 36.87236956536484 38.0 38.0 38.0 35.0 38.0 70-71 36.85777936663112 38.0 38.0 38.0 35.0 38.0 72-73 36.84765454700185 38.0 38.0 38.0 35.0 38.0 74-75 36.817827656167594 38.0 38.0 38.0 35.0 38.0 76-77 36.788593851504565 38.0 38.0 38.0 35.0 38.0 78-79 36.78675726104479 38.0 38.0 38.0 35.0 38.0 80-81 36.78079212784742 38.0 38.0 38.0 35.0 38.0 82-83 36.7161481481193 38.0 38.0 38.0 34.5 38.0 84-85 36.68923571938308 38.0 38.0 38.0 34.0 38.0 86-87 36.68390129767107 38.0 38.0 38.0 34.0 38.0 88-89 36.65949771674035 38.0 38.0 38.0 34.0 38.0 90-91 36.6241205512626 38.0 38.0 38.0 34.0 38.0 92-93 36.60404943890863 38.0 38.0 38.0 34.0 38.0 94-95 36.58096906587268 38.0 38.0 38.0 34.0 38.0 96-97 36.53435526481712 38.0 38.0 38.0 34.0 38.0 98-99 36.50833371014065 38.0 37.5 38.0 34.0 38.0 100 34.95595464984892 38.0 35.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 2.0 19 8.0 20 19.0 21 106.0 22 411.0 23 1132.0 24 2717.0 25 5318.0 26 9936.0 27 16788.0 28 26737.0 29 39374.0 30 53534.0 31 71160.0 32 95080.0 33 134655.0 34 212423.0 35 412808.0 36 1324895.0 37 3394093.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.810207822591124 16.91012787358749 20.92864267001402 23.351021633807363 2 14.703716913378898 20.902140881013572 41.632225902224484 22.761916303383043 3 18.5739606271007 25.08356251613933 31.14936513173659 25.193111725023382 4 12.84336442231415 17.542238689319 38.427614434122056 31.186782454244792 5 13.687175250211292 36.772031703112305 35.61078860104217 13.930004445634236 6 30.535753594131414 37.27805642735899 18.53199850444555 13.654191474064042 7 26.818270984717294 32.28702071537637 22.896822346005084 17.997885953901246 8 24.274072355399696 36.87910669485854 21.00360994401501 17.843211005726747 9 25.33805948357563 17.07955839466262 21.47864975475755 36.10373236700419 10-11 24.322174488786626 26.55845396071639 28.86784764112516 20.251523909371823 12-13 25.086145999498726 24.144745619784054 29.096016029792466 21.673092350924758 14-15 22.221323940330944 25.621518176073288 26.7719357277583 25.385222155837468 16-17 21.749119750782512 28.763619169695637 27.52677119450155 21.9604898850203 18-19 21.732450779994064 27.77293586600561 29.3760443963471 21.11856895765323 20-21 22.435130397698305 26.869921722853963 29.42945399236371 21.265493887084016 22-23 22.24261871287657 26.753848950526 29.29907757237342 21.70445476422401 24-25 22.01923222802415 26.88791469782607 29.390057665306752 21.702795408843027 26-27 21.89149050926038 27.066514493888143 29.35375308558529 21.688241911266186 28-29 21.86579182708176 27.010427818532655 29.41241307743505 21.711367276950533 30-31 22.106970736522342 26.907183173806814 29.341242409346822 21.644603680324014 32-33 21.895026484834247 27.08481341229241 29.28244733917994 21.737712763693402 34-35 22.065861704734992 27.003854187226306 29.308844676471672 21.62143943156703 36-37 22.005449200045167 26.976493790365414 29.257518613569612 21.76053839601981 38-39 21.839877434304054 27.05511687061265 29.38296573149957 21.722039963583725 40-41 22.12079464515091 26.90619874315752 29.281049119052792 21.691957492638778 42-43 21.97557128233673 27.0094220080824 29.12884322314571 21.886163486435155 44-45 21.989378129910694 27.139465258103172 29.00122842337535 21.869928188610785 46-47 22.142728863003256 27.054185048928826 28.73967392345198 22.063412164615936 48-49 22.05805136103685 27.198156915595735 28.691847999684956 22.051943723682463 50-51 22.050828659799198 27.357660226131514 28.594076762039737 21.997434352029554 52-53 22.18829155499014 27.30976724387597 28.51423904072739 21.9877021604065 54-55 22.134622519601688 27.23125736719637 28.535862336167362 22.098257777034576 56-57 22.17055683069694 27.30025113050129 28.49142723576532 22.03776480303645 58-59 22.087294661700177 27.284045528417007 28.586909132537073 22.04175067734574 60-61 22.104924987323262 27.32549062103418 28.60670968604102 21.962874705601532 62-63 22.08147337697027 27.402420708952523 28.645538604942466 21.87056730913474 64-65 22.002387404304944 27.29628458622723 28.693215041367687 22.00811296810014 66-67 22.021799978156963 27.357929586980845 28.622564641670518 21.997705793191678 68-69 22.06515862175797 27.260947773506288 28.672434911135376 22.001458693600366 70-71 22.046700884899636 27.03373510560744 28.641048274677473 22.27851573481545 72-73 22.169027288980477 27.056030464456445 28.636074072001517 22.138868174561562 74-75 22.054443090899063 27.28905100957963 28.541936191689594 22.11456970783172 76-77 22.18713434940252 27.20400653575654 28.324023287534324 22.28483582730662 78-79 22.144978841485724 27.246870494522845 28.248130566326473 22.36002009766496 80-81 22.15653782435629 27.34141555365172 28.17735082919165 22.324695792800338 82-83 22.246659594655352 27.345974420225737 28.197645116232184 22.209720868886723 84-85 22.282921330594547 27.35217303813401 28.147610004925163 22.217295626346285 86-87 22.203521590071453 27.399604736803507 28.228684634507772 22.16818903861727 88-89 22.292353926143036 27.43115124153499 28.12121978647413 22.155275045847848 90-91 22.287606465499458 27.48108642438857 28.070501094781363 22.160806015330607 92-93 22.358253677523074 27.452236041340296 28.068061496831447 22.121448784305187 94-95 22.198677848094782 27.50680251593513 28.106482277041923 22.188037358928167 96-97 22.308187572036225 27.588376389654268 28.12488577154123 21.978550266768277 98-99 23.377536969219346 29.523742050173666 28.318774376452854 18.779946604154134 100 29.720858973886987 40.43491712425556 29.844223901857447 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1653.0 1 1501.5 2 1601.0 3 1918.5 4 2247.0 5 2896.5 6 3675.5 7 5708.0 8 7668.5 9 8102.5 10 8000.0 11 7851.5 12 8517.0 13 10580.0 14 14735.0 15 19534.0 16 22656.0 17 23602.5 18 22976.5 19 21298.0 20 19515.0 21 18436.0 22 18765.0 23 21674.5 24 26898.5 25 34464.5 26 44663.5 27 55974.5 28 68109.5 29 82141.0 30 95685.5 31 108334.5 32 123274.0 33 138994.0 34 152616.0 35 166098.0 36 181244.5 37 194290.0 38 204629.0 39 213007.5 40 221220.5 41 228268.5 42 232605.0 43 238702.5 44 244365.5 45 247655.5 46 247863.0 47 245677.0 48 243763.5 49 241143.5 50 236729.0 51 230066.0 52 220545.5 53 208457.5 54 194456.5 55 179608.5 56 163616.5 57 147150.5 58 130393.5 59 111534.5 60 92869.0 61 75551.0 62 59915.0 63 46296.5 64 34519.0 65 25658.5 66 19199.5 67 14574.5 68 11069.5 69 8124.5 70 5918.5 71 4237.5 72 2952.0 73 2027.0 74 1388.5 75 919.0 76 603.5 77 374.0 78 230.0 79 150.0 80 93.5 81 57.5 82 38.5 83 33.5 84 27.5 85 18.0 86 10.5 87 5.5 88 3.0 89 2.0 90 2.0 91 2.5 92 2.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0030166182916011486 3 0.002620148458990712 4 0.0 5 1.723781880914942E-5 6 8.61890940457471E-5 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 1.5516232824176773E-4 26-27 0.0016552740133704757 28-29 0.005709199426216833 30-31 0.0022013294475983886 32-33 0.0044292266674048715 34-35 0.002238284856103009 36-37 0.0010890614407516163 38-39 6.135994859088193E-5 40-41 9.704384167279586E-5 42-43 0.001900367969848442 44-45 5.10199469195633E-4 46-47 2.8004678407372136E-4 48-49 0.0015770217897921111 50-51 4.412733235934505E-4 52-53 0.0 54-55 0.004273631080383268 56-57 0.04242989449902202 58-59 0.06424046042917599 60-61 0.03000161922614771 62-63 0.012441600968610972 64-65 0.001343736711734103 66-67 0.0 68-69 0.0021845172341032927 70-71 0.003732175101616493 72-73 0.011758137543449359 74-75 0.014684089466729128 76-77 0.018724418615585516 78-79 0.005596293416169613 80-81 0.007175801004063403 82-83 0.030955797296790065 84-85 0.017685218194879903 86-87 0.013175879936072502 88-89 0.006257461665624123 90-91 6.673118088943545E-5 92-93 0.0 94-95 0.0 96-97 2.3134872373006325E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 47.0 20-21 220.0 22-23 461.0 24-25 592.0 26-27 1477.0 28-29 3714.0 30-31 11493.0 32-33 15167.0 34-35 21385.0 36-37 33493.0 38-39 36679.0 40-41 36198.0 42-43 41728.0 44-45 50934.0 46-47 50511.0 48-49 47401.0 50-51 41513.0 52-53 39304.0 54-55 42722.0 56-57 43824.0 58-59 46105.0 60-61 45119.0 62-63 44517.0 64-65 47747.0 66-67 50521.0 68-69 51122.0 70-71 52578.0 72-73 47009.0 74-75 46875.0 76-77 49183.0 78-79 50727.0 80-81 49956.0 82-83 47068.0 84-85 46338.0 86-87 48448.0 88-89 50420.0 90-91 50992.0 92-93 50511.0 94-95 58543.0 96-97 178711.0 98-99 1344893.0 100-101 2824952.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 89.0391876883117 #Duplication Level Percentage of deduplicated Percentage of total 1 92.06219394909307 81.97142966031052 2 5.88232708649835 10.475152509975326 3 1.224275420336612 3.2702546680061486 4 0.3955828322747866 1.408894961967546 5 0.18764593973016808 0.8353921023292031 6 0.08316377083386996 0.44429007600868137 7 0.052595581079696974 0.3278147470731668 8 0.030789277826008016 0.2193161829710001 9 0.018686801948629737 0.14974718993985167 >10 0.061809856464414066 0.8130342801452026 >50 7.105659150334414E-4 0.041631782919601956 >100 2.1891799936068842E-4 0.04304183835375926 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.723781880914942E-5 0.0 0.0 0.0 3 0.0 1.723781880914942E-5 0.0 0.0 0.0 4 0.0 1.723781880914942E-5 0.0 1.723781880914942E-5 0.0 5 0.0 3.447563761829884E-5 0.0 3.447563761829884E-5 0.0 6 3.447563761829884E-5 3.447563761829884E-5 0.0 3.447563761829884E-5 1.723781880914942E-5 7 3.447563761829884E-5 5.1713456427448263E-5 0.0 3.447563761829884E-5 1.723781880914942E-5 8 3.447563761829884E-5 5.1713456427448263E-5 0.0 3.447563761829884E-5 1.723781880914942E-5 9 3.447563761829884E-5 1.0342691285489653E-4 0.0 3.447563761829884E-5 1.723781880914942E-5 10-11 3.447563761829884E-5 1.0342691285489653E-4 0.0 5.1713456427448263E-5 1.723781880914942E-5 12-13 3.447563761829884E-5 1.0342691285489653E-4 0.0 6.033236583202298E-5 1.723781880914942E-5 14-15 5.1713456427448263E-5 1.2066473166404594E-4 0.0 1.0342691285489653E-4 1.723781880914942E-5 16-17 8.61890940457471E-5 1.2066473166404594E-4 0.0 1.0342691285489653E-4 1.723781880914942E-5 18-19 8.61890940457471E-5 1.2066473166404594E-4 0.0 1.0342691285489653E-4 1.723781880914942E-5 20-21 8.61890940457471E-5 1.3790255047319537E-4 0.0 1.2066473166404594E-4 1.723781880914942E-5 22-23 8.61890940457471E-5 1.5514036928234478E-4 0.0 1.2066473166404594E-4 2.5856728213724132E-5 24-25 8.61890940457471E-5 1.896160069006436E-4 0.0 1.4652145987777008E-4 3.447563761829884E-5 26-27 8.61890940457471E-5 2.0685382570979305E-4 0.0 1.9823491630521832E-4 3.447563761829884E-5 28-29 8.61890940457471E-5 2.0685382570979305E-4 0.0 4.3956437963331023E-4 3.447563761829884E-5 30-31 8.61890940457471E-5 2.499483727326666E-4 0.0 0.0015772604210371722 3.447563761829884E-5 32-33 8.61890940457471E-5 2.585672821372413E-4 0.0 0.00400779287312724 5.1713456427448263E-5 34-35 8.61890940457471E-5 3.1028073856468957E-4 0.0 0.007619115913644044 5.1713456427448263E-5 36-37 8.61890940457471E-5 3.619941949921378E-4 0.0 0.013600639040418893 5.1713456427448263E-5 38-39 8.61890940457471E-5 3.792320138012872E-4 0.0 0.028020074474272384 5.1713456427448263E-5 40-41 8.61890940457471E-5 4.137076514195861E-4 0.0 0.0432152117545376 6.033236583202298E-5 42-43 8.61890940457471E-5 4.223265608241608E-4 0.0 0.052652917552546905 6.895127523659768E-5 44-45 8.61890940457471E-5 4.998967454653332E-4 0.0 0.06477972308478352 6.895127523659768E-5 46-47 8.61890940457471E-5 5.688480207019309E-4 0.0 0.07784598974211879 8.61890940457471E-5 48-49 8.61890940457471E-5 5.774669301065056E-4 0.0 0.09044683529160702 8.61890940457471E-5 50-51 8.61890940457471E-5 6.722749335568274E-4 0.0 0.10335796157965993 8.61890940457471E-5 52-53 8.61890940457471E-5 6.895127523659768E-4 0.0 0.14012622909957564 8.61890940457471E-5 54-55 8.61890940457471E-5 6.981316617705515E-4 0.0 0.1869958584416529 9.48080034503218E-5 56-57 8.61890940457471E-5 7.067505711751262E-4 0.0 0.2566107897024028 1.0342691285489653E-4 58-59 8.61890940457471E-5 7.239883899842756E-4 0.0 0.30103264877358094 1.0342691285489653E-4 60-61 9.48080034503218E-5 7.498451181979997E-4 0.0 0.31625364278205986 1.0342691285489653E-4 62-63 1.2066473166404594E-4 7.75701846411724E-4 0.0 0.32669976098040443 1.5514036928234478E-4 64-65 1.2066473166404594E-4 7.929396652208734E-4 0.0 0.33216414954290474 1.637592786869195E-4 66-67 1.2066473166404594E-4 8.274153028391722E-4 0.0 0.3381111970320613 1.809970974960689E-4 68-69 1.2066473166404594E-4 8.274153028391722E-4 0.0 0.3437996772390806 1.9823491630521832E-4 70-71 1.3790255047319537E-4 8.274153028391722E-4 0.0 0.3483763181329098 2.0685382570979305E-4 72-73 1.3790255047319537E-4 8.274153028391722E-4 0.0 0.35237549209663244 2.0685382570979305E-4 74-75 1.3790255047319537E-4 8.446531216483216E-4 0.0 0.35541796711644735 2.2409164451894247E-4 76-77 1.3790255047319537E-4 8.705098498620458E-4 0.0 0.3588482930594681 2.2409164451894247E-4 78-79 1.3790255047319537E-4 8.791287592666205E-4 0.0 0.3611323040516804 2.2409164451894247E-4 80-81 1.3790255047319537E-4 8.791287592666205E-4 0.0 0.36187353026047375 2.2409164451894247E-4 82-83 1.3790255047319537E-4 8.791287592666205E-4 0.0 0.36239066482474824 2.585672821372413E-4 84-85 1.4652145987777008E-4 8.791287592666205E-4 0.0 0.36258028083164895 2.585672821372413E-4 86-87 1.5514036928234478E-4 9.136043968849193E-4 0.0 0.36267508883509925 2.585672821372413E-4 88 1.5514036928234478E-4 9.82555672121517E-4 0.0 0.3626837077445038 2.585672821372413E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7545 0.0 49.534935 1 GTATCAA 13480 0.0 34.791058 1 ATCAACG 16895 0.0 28.99187 3 TCAACGC 17010 0.0 28.79562 4 CAACGCA 17390 0.0 28.141937 5 TATCAAC 17690 0.0 27.881245 2 AACGCAG 18010 0.0 27.173141 6 ACGCAGA 20450 0.0 23.930967 7 TGGTATC 3570 0.0 23.581911 2 CGCAGAG 21265 0.0 23.033789 8 GTGGTAT 3880 0.0 22.903221 1 GCAGAGT 24585 0.0 19.888678 9 GAGTACT 14610 0.0 19.556778 12-13 TACATGG 17015 0.0 18.841757 2 CAGAGTA 23860 0.0 18.434795 10-11 GTACATG 16435 0.0 18.290758 1 AGAGTAC 22310 0.0 17.952692 10-11 ACATGGG 17180 0.0 17.819328 3 GTACTTT 16100 0.0 17.575281 14-15 AGTACTT 16020 0.0 16.40228 12-13 >>END_MODULE